BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37920.1
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321495 jgi|Araly1|321495|fgenesh1_pm.C_scaffold_4001552 1013 0.0
Ahg946485 jgi|Araly1|946485|scaffold_702714.1 363 3e-99
Ahg896891 jgi|Araly1|896891|Al_scaffold_0005_857 294 1e-78
Ahg482797 jgi|Araly1|482797|fgenesh2_kg.4__1857__AT2G37910.1 226 4e-58
> Ahg321495 jgi|Araly1|321495|fgenesh1_pm.C_scaffold_4001552
Length=1188
Score = 1013 bits (548), Expect = 0.0
Identities = 719/794 (91%), Gaps = 42/794 (5%)
Strand=Plus/Plus
Query 43 CTCCAATGGCGGCGACGATGATCGGAATTAACCTCTCCTGCTTCAAATCAACATCGTtct 102
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 404 CTCCAATGGCGGCGACGATGATCGGATTTAACCTCTCCTGCTTCAAATCAACATCGTTCT 463
Query 103 tctcaccggacctcaattctctccaatcaaagctctctctcctatctctcaaaccctctc 162
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 464 TCTCACCGGACCTCAATTCTCTCCACTCAAAGCTCTCTCTCCTATCTCTCAAACCCTATC 523
Query 163 caaCACAGCCACGGAAATCAACAGTCATCCGTATGGGCGGTGGTCCGAGAACTTTCCCCG 222
| ||| | ||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 524 C-ACA-A-CCACGAAAATCAACAGTTATCCGTATGGGCGGTGGTCCGAGAACATTCCCCG 580
Query 223 GCGGTGTATCAAAATGGCAATGGAAAAGGATGCAAGCGAAGAAACAGAAACAGCTTCTCA 282
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GCGGTGTCTCAAAATGGCAGTGGAAAAGGATGCAAGCGAAGAAACAGAAACAGCTTCTCA 640
Query 283 AAGCAAGGTTATGCAGAGAACGTCAGATCTACGAGATGCGAAAACGCGCCGAGCTAAAAG 342
|||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 641 AAGCGAGGTTATGCAGAGAACGTCAGATCTACGAGATGAGAAAACGCGCAGAGCTAAAAG 700
Query 343 CGGCGGTGGCTGAGCTAGAACGACCATGGGAACCGATTCATAAACCACCGAATCTATTCT 402
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 701 CGGCGGTGGCTGAGCTTGAACGACCATGGGAACCGATTCAGAAACCACCGAATCTATTCT 760
Query 403 CAGTTTGTGCTGATGAGCAAGTTAAAGTACTCGCGGATCGGTTTCAGAAACCTGGTGGAT 462
| |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 761 CTGTTTGTGCTGATGAACAAGTTAAGGTGCTCGCGGATCGGTTTCAGAAACCTGGTGGAT 820
Query 463 TTGATTTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCCTT 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TTGATTTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCCTT 880
Query 523 CTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTTAAACCTTATGGTAGATTATCAT 582
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 881 CTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTCAAACCTTATGGTAGATTATCAT 940
Query 583 CTAGCTCTGTTG-T--TG---AT---GATGGTGATGAGAGTGAGGTTAAAGATGAAGAAA 633
| | |||||||| | || || |||||| | ||||||||||| |||||||||||||
Sbjct 941 CAACCTCTGTTGATGATGGTGATTCTGATGGTAAAGAGAGTGAGGTGAAAGATGAAGAAA 1000
Query 634 TTGGGAAGAAGTTACGTGGTCGTAGGGTGAGGAAGAGAG--G-T----G----AT-GA-- 679
||||||||||| ||||||||||||||||||| ||||||| | | | || ||
Sbjct 1001 TTGGGAAGAAGCTACGTGGTCGTAGGGTGAGAAAGAGAGTTGGTATCAGGGGGATAGAGA 1060
Query 680 ----TG--GA-GG---TAAGAGGAGGACTGAAAATCGTGGTAATGGTGGGAGATTGAGAA 729
|| || || ||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 1061 GAGGTGAAGAAGGAGGTAAGAGGAGGATTGAGAATCGTGTTAATGGTGGGAGATTGAGAA 1120
Query 730 ATGGAGGGTCTTCTTCTTCTCAGGTGTATGATATGACTTTGCAGAATGATGGGAGATATG 789
||||| |||||| | |||| ||||| ||||||||||||||||||||||||||||
Sbjct 1121 ATGGAAAATCTTCT-C-----AGGTTTATGAAATGACTTTGCAGAATGATGGGAGATATG 1174
Query 790 AAATTGGATCTTAG 803
||||||||||||||
Sbjct 1175 AAATTGGATCTTAG 1188
> Ahg946485 jgi|Araly1|946485|scaffold_702714.1
Length=530
Score = 363 bits (196), Expect = 3e-99
Identities = 337/397 (85%), Gaps = 41/397 (10%)
Strand=Plus/Plus
Query 461 ATTTGATTTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCC 520
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 ATTTGATCTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCC 199
Query 521 TTCTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTTAAACCTTATGGTAGATTATC 580
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 200 TTCTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTCAAACCTTATGGTAGATTATC 259
Query 581 ATCTAGCTCTGTTGTTGATGATGGT---GATG---A-G--AGTGAGGTTAAAGATGAAGA 631
||| | |||||||||||||| || | |||| | | |||||||| |||||||||||
Sbjct 260 ATCAACCTCTGTTGTTGATGGTGATTCTGATGGTGAAGTGAGTGAGGTAAAAGATGAAGA 319
Query 632 AATTGGGAAGAAGTTACGTGGTCGTAGGGTGAGGAAGAGA---GGTG--ATG---AT-G- 681
||||||||||||| |||||||||||||||||||||| ||| |||| ||| || |
Sbjct 320 AATTGGGAAGAAGCTACGTGGTCGTAGGGTGAGGAATAGATTTGGTGTCATGGGGATAGA 379
Query 682 GAG-G-T-AAGA-GGAGG-ACT-G-A--A---A-A-TCGTGGTAATGGTGGGAGATTGAG 727
||| | | |||| ||||| | | | | | | ||||| ||||||||||||||||||
Sbjct 380 GAGAGGTGAAGAAGGAGGTAAGAGGAGGATTGAGAATCGTGTTAATGGTGGGAGATTGAG 439
Query 728 AAATGGAGGGTCTTCTTCTTCTCAGGTGTATGATATGACTTTGCAGAATGATGGGAGATA 787
||||||| |||||| | |||||||||| |||||||||||||||| |||||||||
Sbjct 440 AAATGGAAAATCTTCT-C-----AGGTGTATGAAATGACTTTGCAGAATGGTGGGAGATA 493
Query 788 TGAAATTGGATCTTAGGTATGAGTTCTTC--TTTGTT 822
|||||||||||||||||| ||||||||| ||||||
Sbjct 494 CGAAATTGGATCTTAGGTAAGAGTTCTTCACTTTGTT 530
> Ahg896891 jgi|Araly1|896891|Al_scaffold_0005_857
Length=546
Score = 294 bits (159), Expect = 1e-78
Identities = 260/303 (86%), Gaps = 30/303 (10%)
Strand=Plus/Plus
Query 462 TTTGATTTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCCT 521
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TTTGATCTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCCT 63
Query 522 TCTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTTAAACCTTATGGTAGATTATCA 581
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 64 TCTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTCAAACCTTATGGTAGATTATCA 123
Query 582 TCTAGCTCTGTTGTTGATGATGGT---GATG---A-G--AGTGAGGTTAAAGATGAAGAA 632
|| | |||||||||||||| || | |||| | | |||||||| ||||||||||||
Sbjct 124 TCAACCTCTGTTGTTGATGGTGATTCTGATGGTGAAGTGAGTGAGGTAAAAGATGAAGAA 183
Query 633 ATTGGGAAGAAGTTACGTGGTCGTAGGGTGAGGAAGAGA---GGTG--ATG---AT-G-G 682
|||||||||||| ||||||||||||||| |||||| ||| |||| ||| || | |
Sbjct 184 ATTGGGAAGAAGCTACGTGGTCGTAGGGGGAGGAATAGATTTGGTGTCATGGGGATAGAG 243
Query 683 AG-G-T-AAG-AGG-A-G-G-AC--T-GAAAATCGTGGTAATGGTGGGAGATTGAGAAAT 731
|| | | ||| ||| | | | | | || ||||||| ||||||||||||||||||||||
Sbjct 244 AGAGGTGAAGGAGGTAAGAGGAGGATTGAGAATCGTGTTAATGGTGGGAGATTGAGAAAT 303
Query 732 GGA 734
|||
Sbjct 304 GGA 306
> Ahg482797 jgi|Araly1|482797|fgenesh2_kg.4__1857__AT2G37910.1
Length=480
Score = 226 bits (122), Expect = 4e-58
Identities = 142/151 (94%), Gaps = 3/151 (2%)
Strand=Plus/Minus
Query 1005 AAAGGCGTCATGGATTTATTAGAGTAAGAAACACGTAAACCATCATTGGTGACATCAAAC 1064
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 410 AAAGGCGTCTTGGATTTATTAGAGTAAGAAACACGTAAACCATCATTGGTGATATCAAAC 351
Query 1065 TGCATGTTATCTTCCGATGTCAATACATTTCCGGATGATGAAGCAGAATAAGGCGATGAT 1124
|||||||||||||||||||| ||||||||||||||||| ||||||||| |||| ||||||
Sbjct 350 TGCATGTTATCTTCCGATGTTAATACATTTCCGGATGACGAAGCAGAAGAAGGTGATGAT 291
Query 1125 GAT-ATA--CATAAATCCGAATTCCTCTGTT 1152
||| ||| ||||||||||||||||||||||
Sbjct 290 GATGATATACATAAATCCGAATTCCTCTGTT 260
Score = 130 bits (70), Expect = 3e-29
Identities = 86/94 (91%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 1264 TCAGCCGAACGCATTCACGGTTATTGGAACGGTGATCATCAACAATCTCCTCCACAGTTA 1323
||| || |||| |||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 256 TCAACCTAACGTATTCACGGTTCTTGGAACGGAGATCATCAACAATCTCCTCCACAGTTA 197
Query 1324 ATCCCTTATTTCTTGATTCTGTAACAAGTTTCGT 1357
||||||||| ||||||||| |||||||||||||
Sbjct 196 ATCCCTTATACCTTGATTCTATAACAAGTTTCGT 163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52259816140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5