BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37970.1
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934499 jgi|Araly1|934499|scaffold_402487.1 1136 0.0
> Ahg934499 jgi|Araly1|934499|scaffold_402487.1
Length=718
Score = 1136 bits (615), Expect = 0.0
Identities = 688/723 (95%), Gaps = 5/723 (1%)
Strand=Plus/Plus
Query 36 TGATAAATACTACTTCTCCTATGAGAATAGTTTTTGGTAAAACTTACATAATGGGAATGG 95
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 TGATAAATACTACTTCTCCTATGGGAATAGTTTTTGGTAAAACTTACATAATGGGAATGG 60
Query 96 TTTTTGGTAAAATCGCTGTAGAGACTCCTAAATACACGGTGACTAAATCCGGTGACGGTT 155
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TTTTTGGTAAAATCGTTGTGGAGACTCCTAAATACACGGTGACTAAATCCGGTGATGGTT 120
Query 156 ATGAGATCCGTGAATATCCACCAGCGGTTGCGGCGGAGGTTACATACGATGCGTCGGAGT 215
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGAGATCCGTGAATATCCACCGGCGGTTGCGGCGGAGGTTACATACGATGCGTCGGAGT 180
Query 216 TCAAAGGTGATAAAGACGGAGGCTTTCAGCTTTTGGCTAAGTACATAGGTGTGTTTGGCA 275
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TCAAAGGTGATAAAGATGGAGGCTTTCAGGTTTTGGCTAAGTACATAGGTGTGTTTGGCA 240
Query 276 AACCGGAGAATGAGAAACCGGAGAAAATTGCTATGACTGCACCGGTGATCACTAAGGAAG 335
|||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 241 AACCGGAGAATGAGAAGCCGGAGAAAATTGCGATGACTGCTCCGGTGATCACTAAAGAAG 300
Query 336 GTGAGAAGATTGCGATGACTGCTCCGGTGATTACTAAGGAGAGTGAGAAGATTGAGATGA 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGAGAAGATTGCGATGACTGCTCCGGTGATTACTAAGGAGAGTGAGAAGATTGAGATGA 360
Query 396 CTTCTCCGGTTGTAACTAAGGAAGGTGGTGGAGAAGGAAGGAAGAAGTTGGTGACGATGC 455
||||||||||||| |||||||||||||||| | | ||| |||||||| ||||||||||||
Sbjct 361 CTTCTCCGGTTGTGACTAAGGAAGGTGGTG-A-A-GGAGGGAAGAAGATGGTGACGATGC 417
Query 456 AGTTTTTGTTGCCGTCGATGTATAAGAAGGCGGAGGAGGCACCACGTCCAACGGATGAGA 515
|||||||||||||||| |||||||||||||| |||||||| || ||||| ||||||||||
Sbjct 418 AGTTTTTGTTGCCGTCTATGTATAAGAAGGCAGAGGAGGCGCCGCGTCCGACGGATGAGA 477
Query 516 GGGTTGTGATTAAGGAGGAAGGAGGGAGGAAGTATGGTGTGATTAAGTTTAGTGGTATAG 575
|||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| |
Sbjct 478 GGGTTGTGATTAGGGAGGAAGGAGGGAGAAAGTATGGTGTGGTTAAGTTTAGTGGTACGG 537
Query 576 CGTCGGAGAGTGTGGTGAGTGAGAAGGTGAAGAAGCTGAGTAGTCATCTTGAGAAAGATG 635
||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 538 CGTCGGATAGTGTGGTGAGTGAGAAGGTGAAGAAGCTGACTAGTGATCTTGAGAAAGATG 597
Query 636 GGTTTAAGATCACCGGAGATTTCGTTCTTGCTAGGTATAATCCTCCATGGACGTTACCAC 695
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 598 GGTTTAAGATCACCGGAGATTTCATTCTTGCTAGGTATAATCCTCCATGGACGTTACCAC 657
Query 696 CGTTTAGGACCAATGAGGTCATGATTCCTGTTGAATGAATTTGATTCAAAGTTTCCTGCT 755
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 658 CGTTTAGGACCAATGAGGTCATGATTCCTGTTGAATGAAT--GATCCAAAGTTTCCAGCT 715
Query 756 TTT 758
|||
Sbjct 716 TTT 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32290110699
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5