BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G38010.2

Length=2443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482807 jgi|Araly1|482807|fgenesh2_kg.4__1867__AT2G38010.2        3869    0.0  
  Ahg344410 jgi|Araly1|344410|fgenesh1_pg.C_scaffold_4000752           226    6e-58


> Ahg482807 jgi|Araly1|482807|fgenesh2_kg.4__1867__AT2G38010.2
Length=2408

 Score = 3869 bits (2095),  Expect = 0.0
 Identities = 2268/2354 (96%), Gaps = 2/2354 (0%)
 Strand=Plus/Plus

Query  76    TACTTAATCGGAGTCGGAAGCTATGACATCACTGGTCCTGCCGCTGATGTCAACATGATG  135
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  55    TACTTAATCGGAGTCGGAAGCTATGACATCACTGGTCCAGCCGCTGATGTCAACATGATG  114

Query  136   GGCTACGCAAACTCAGATCAAATCGCTTCCGGTATTCATTTCCGGTTACGAGCTCGTGCC  195
             |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  115   GGCTACGCAAACTCCGATCAAATCGCTTCCGGGATTCATTTCCGGTTACGAGCTCGTGCC  174

Query  196   TTCATCGTCGCTGAGCCTCAAGGTAACCGCGTCGTGTTTGTCAATCTCGACGCTTGTATG  255
             ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||
Sbjct  175   TTCATCGTCGCTGAGCCCCAAGGTAACCGCGTCGCATTTGTCAATCTCGACGCTTGTATG  234

Query  256   GCTTCTCAAATCGTTACAATCAAAGTTCTTGAGCGTCTCAAAGCAAGGTATGGTGAGCTT  315
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  235   GCTTCTCAAATCGTCACAATCAAAGTTCTTGAGCGTCTCAAAGCAAGGTATGGTGAGCTT  294

Query  316   TACACAGAGAAGAATGTAGCAATAAGTGGAATTCACACACATGCTGGACCAGGAGGATAT  375
             ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct  295   TACACAGAGAAGAATGTAGCAATAAGTGGAATTCATACGCATGCTGGACCTGGAGGATAT  354

Query  376   CTTCAATACGTCACATATATTGTGACGTCTCTTGGATTTGTTCGTCAATCTTTTGACGTT  435
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  355   CTTCAATACGTCACATATATTGTGACGTCTCTTGGATTTGTTCGTCAATCTTTTGATGTT  414

Query  436   GTTGTTAACGGCATTGAGCAAAGCATTGTCCAAGCACACGAAAGCCTACGTCCTGGTTCT  495
             ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct  415   GTTGTTAACGGCATTGAGCAAAGCATTGTTCAGGCACACGAAAGCCTCCGTCCTGGTTCT  474

Query  496   GCTTTTGTTAACAAAGGGGATCTTTTGGATGCTGGTGTGAATCGAAGTCCGAGTTCTTAT  555
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  475   GCTTTTGTTAACAAAGGGGATCTTTTGGATGCTGGTGTGAATCGAAGTCCGAGTTCTTAT  534

Query  556   CTGAACAATCCTGCAGCTGAGAGGAGTAAATATAAGTATGATGTTGATAAGGAAATGACT  615
             ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| 
Sbjct  535   CTGAACAATCCTGCAGCTGAGAGGAGTAAATATAAGTATAATGTTGATAAAGAAATGACG  594

Query  616   CTTGTTAAGTTTGTTGATTCTCAGTTGGGACCTACTGGTAGTTTTAACTGGTTTGCTACT  675
             ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct  595   CTTGTTAAGTTTGTTGATTCTCAGTTGGGGCCTATTGGTAGTTTTAACTGGTTTGCTACT  654

Query  676   CATGGGACTTCCATGAGTCGGACTAACTCGTTGATTAGTGGAGATAACAAAGGCGCTGCA  735
             ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  655   CATGGGACTTCCATGAGCCGGACTAACTCGTTGATTAGTGGAGATAATAAAGGCGCTGCA  714

Query  736   GCTCGGTTTATGGAGGATTGGTTTGAGAATGGACAGAAGAATTCTGTTAGCTCT-AGAAA  794
             || ||||||||||||||||||||||||||||||||||||||||||| ||| | | |||||
Sbjct  715   GCGCGGTTTATGGAGGATTGGTTTGAGAATGGACAGAAGAATTCTGATAG-TTTAAGAAA  773

Query  795   CATCCCTCGGAGAGTATCAACCATTGTTTCTGATTTCAGTAGAAACCGTGAGTCATATCC  854
              ||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct  774   TATCCCTCGGAGAGTATCAAGCATTGTTTCTGATTTCAGTAGAAACCGTGAGTTAAATCC  833

Query  855   TTTCCTTGAGTTACCTAATGTAGCAATTCTCTACATTGCAGTTGCAGAGAGACTGATGTG  914
             |||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct  834   TTTCATTGAGTTACCTAATGTAGCAACTCTCTACATTGCAGTTGCAGCGAGACTGATGTG  893

Query  915   GAAAGTTATGGTTTTGTTTTACTTTGTTTCAGAGAGTAGACTTTTGGATATTGCGGCTAC  974
             ||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||
Sbjct  894   GAAAGTTATGGTTTTGTTTTTGTTTGTTTCAGAGAGTAGACTTTTGGATATTGCAGCTAC  953

Query  975   TTATAAGTCATCTAGAGGACATTCTGTGGATAAGTCCCTTGATGTTAAAACCCGAGTAAG  1034
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  954   TTATAAGTCCTCTAGAGGACATTCTGTGGATAAGTCCCTTGATGTTAAAACCCGAGTAAG  1013

Query  1035  AAACGGTTCGAAGCGTAAATTTGTCTCTGCCTTCTGTCAATCAAACTGTGGTGATGTGAG  1094
             ||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1014  AAACACTTCGAAGCGTAAATTTGTCTCTGCCTTCTGTCAATCAAACTGTGGTGACGTGAG  1073

Query  1095  TCCAAATACTCTTGGTACCTTTTGCATTGACACTGGACTGCCTTGTGATTTCAATCACAG  1154
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct  1074  TCCAAATACTCTTGGTACATTTTGCATTGACACTGGACTGCCTTGTGATTTCAATCATAG  1133

Query  1155  TACCTGCAATGGACAGAACGAGTTGTGCTATGGCCGTGGTCCGGGCTACCCTGATGAATT  1214
             ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1134  TACTTGCAATGGAAAGAACGAGTTGTGCTATGGCCGTGGTCCGGGCTACCCTGATGAATT  1193

Query  1215  TGAGAGTACACGTATCATTGGAGAAAAGCAATTCAAAATGGCTGTGGAACTTTTTAACAA  1274
             |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct  1194  TGAGAGTACACGTATCATTGGAGAAAAGCAATTCAAAATGGCAGTAGAACTTTTTAATAA  1253

Query  1275  AGCTACAGAGAAGCTGCAGGGGAAAATTGGTTACCAACATGCGTATCTAGATTTCTCGAA  1334
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  1254  AGCTACAGAGAAGCTGCAGGGAAAAATTGGTTACCAACATGCGTATCTAGATTTCTCAAA  1313

Query  1335  TCTTGATGTCACAGTTCCTAAAGCAGGCGGTGGCTCTGAGACGGTTAAGACATGTCCAGC  1394
             |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct  1314  TCTTGATGTCACAGTTCCTAAAGCAGGCGGCGGCTCTGAGACAGTTAAGACATGTCCAGC  1373

Query  1395  TGCAATGGGGTTTGGTTTTGCTGCTGGAACAACTGATGGTCCAGGTGCTTTTGATTTCAA  1454
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1374  TGCAATGGGGTTTGGTTTTGCTGCTGGAACAACTGATGGTCCAGGTGCTTTTGATTTCAA  1433

Query  1455  ACAAGGAGATGATCAGGGTAATGTGTTTTGGAGACTAGTGAGGAATGTGTTAAGAACTCC  1514
             ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  1434  ACAAGGAGATGATAAGGGTAATGTGTTTTGGAGACTAGTGAGGAATGTGTTGAGAACTCC  1493

Query  1515  TGGTCCAGAACAGGTCCAATGCCAAAAACCAAAACCCATTTTACTTGACACTGGTGAGAT  1574
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1494  TGGTCCAGAACAGGTCCAATGCCAAAAACCAAAACCCATTTTACTTGACACTGGTGAGAT  1553

Query  1575  GAAAGAACCATATGACTGGGCGCCTTCAATTCTTCCGATTCAGATACTTCGCATTGGCCA  1634
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  1554  GAAAGAACCATATGACTGGGCGCCTTCAATTCTTCCGATTCAGATACTTCGCGTTGGCCA  1613

Query  1635  ATTAGTCATCCTCAGTGTTCCCGGAGAGTTCACAACAATGGCTGGAAGACGTCTCCGTGA  1694
             |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct  1614  ATTAGTCATCCTCAGTGTCCCCGGAGAATTCACAACAATGGCTGGAAGACGTCTCCGTGA  1673

Query  1695  CGCTATCAAGTCTTTTCTCATTTCTTCGGACCCCAAGGAATTCAGCAACAACATGCATGT  1754
              |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct  1674  TGCTATCAAGTCTTTTCTCATCTCTTTGGACCCCAAGGAATTCAGCAACAACATGCATGT  1733

Query  1755  CGTAATCGCAGGTCTCACCAACACCTATTCTCAGTACATCGCCACTTTCGAAGAGTACGA  1814
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  1734  CGTAATCGCAGGTCTCACCAACACATATTCTCAGTACATCGCCACTTTCGAAGAGTACGA  1793

Query  1815  GGTTCAAAGATACGAGGGCGCCTCAACGTTATACGGACGACACACACTCACTGCTTATAT  1874
             |||||||||||||||||| || |||||| |||| |||| |||||||||||||||||||||
Sbjct  1794  GGTTCAAAGATACGAGGGAGCTTCAACGCTATATGGACCACACACACTCACTGCTTATAT  1853

Query  1875  CCAAGAGTTCAAGAAACTAGCCACAGCTTTAGTTAACGGTCTAACACTCCCACGTGGTCC  1934
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  1854  CCAAGAGTTCAAGAAACTAGCCACAGCTTTGGTTAACGGTCTAACACTCCCACGTGGTCC  1913

Query  1935  GCAACCTCCTGACCTTTTAGACAAACAGATCAGTTTACTATCCCCTGTGGTTGTAGACTC  1994
             |||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct  1914  GCAACCGCCTGACCTTTTAGACAAACAGATTAGTTTACTATCCCCTGTAGTCGTAGACTC  1973

Query  1995  AACTCCTCTAGGAGTCAAATTCGGTGACGTCAAAGCTGATGTACCTCCAAAGTCAACGTT  2054
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1974  GACTCCTCTAGGAGTCAAATTCGGTGACGTCAAAGCTGATGTACCTCCAAAGTCAACTTT  2033

Query  2055  CAGGAGAGGTCAACAAGTTAACGCAACGTTTTGGTCAGGATGTCCTCGAAATGATTTGAT  2114
             |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  2034  CAGGAGAGGTCAACAAGTTAACGCAACGTTTTGGTCGGGATGTCCTCGAAACGATTTGAT  2093

Query  2115  GACTGAAGGATCATTCGCTGTGGTGGAGACGCTGCGTGAGGGAGGGAAATGGGCTCCGGT  2174
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct  2094  GACGGAAGGATCATTCGCTGTGGTGGAGACGCTGCGTGAGGGAGGGAAATGGGTTCCAGT  2153

Query  2175  GTATGATGACGATGACTTCAGTTTGAAGTTCAAGTGGTCGAGACCGGCAAAGCTGAGTTC  2234
             ||| |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||
Sbjct  2154  GTACGATGACGATGACTTCAGTTTGAAGTTTAAGTGGTCAAGACCGGCAAAGCTAAGCTC  2213

Query  2235  GGAGAGCCAAGCCACGATTGAGTGGAGGGTACCGGAATCTGCGGTAGCCGGAGTTTATAG  2294
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  2214  GGAGAGCCAAGCCACGATTGAGTGGAGGGTACCGGAATCTGCGGTAGCGGGAGTTTATAG  2273

Query  2295  AATAAGACATTATGGAGCTTCTAAGTCGTTGTTTGGATCCATTAGTAGCTTCTCTGGTTC  2354
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  2274  AATAAGACATTATGGAGCTTCTAAGTCCTTGTTTGGATCCATTAGTAGCTTCTCTGGTTC  2333

Query  2355  TTCTAGTGCCTTTGTAGTTGTATGACATACTATTGTATACTTTATGAAACAAAAAGAGAA  2414
             |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  2334  TTCTAGCGCCTTTGTAGTTGTATGACATACTATTGTATACTTTATGAAATAAAAAGAGAA  2393

Query  2415  GAAAAGAGATTTGA  2428
             ||||||||||||||
Sbjct  2394  GAAAAGAGATTTGA  2407


> Ahg344410 jgi|Araly1|344410|fgenesh1_pg.C_scaffold_4000752
Length=492

 Score =  226 bits (122),  Expect = 6e-58
 Identities = 154/169 (91%), Gaps = 4/169 (2%)
 Strand=Plus/Plus

Query  2062  GGTC-AACAAGTTAACGCAACGTTTTGGTCAGGATGTCCTCGAAA-TGATTTGATGACTG  2119
             |||| ||| |||||| || ||||||||||| |||||||||||||| | ||| |||||  |
Sbjct  292   GGTCTAAC-AGTTAATGCTACGTTTTGGTCGGGATGTCCTCGAAACT-ATTCGATGAAGG  349

Query  2120  AAGGATCATTCGCTGTGGTGGAGACGCTGCGTGAGGGAGGGAAATGGGCTCCGGTGTATG  2179
             |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct  350   AAGGATCATTCGCTGTGGTGGAGACGCTGCGTGAGGGAGGGAAATGGGTTCCAGTGTATG  409

Query  2180  ATGACGATGACTTCAGTTTGAAGTTCAAGTGGTCGAGACCGGCAAAGCT  2228
             | ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct  410   ACGACGATGACTTCAGTTTGAAGTTGAAGTGGTCGAGACCGGCCAAGCT  458


 Score =  139 bits (75),  Expect = 9e-32
 Identities = 83/87 (95%), Gaps = 0/87 (0%)
 Strand=Plus/Plus

Query  1834  GCCTCAACGTTATACGGACGACACACACTCACTGCTTATATCCAAGAGTTCAAGAAACTA  1893
             ||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  214   GCCTCAACGCTATATGGACCACACACACTCACTGCTTATATCCAAGAGTTCAAGAAACTA  273

Query  1894  GCCACAGCTTTAGTTAACGGTCTAACA  1920
             ||||||||||| |||||||||||||||
Sbjct  274   GCCACAGCTTTGGTTAACGGTCTAACA  300


 Score =  121 bits (65),  Expect = 3e-26
 Identities = 85/95 (89%), Gaps = 0/95 (0%)
 Strand=Plus/Plus

Query  1659  AGAGTTCACAACAATGGCTGGAAGACGTCTCCGTGACGCTATCAAGTCTTTTCTCATTTC  1718
             ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct  117   AGAGTTCACTACAATGGCTGGAAGACGTCTCCGTGACGCTATCAAGTCTTTCCTCATCTC  176

Query  1719  TTCGGACCCCAAGGAATTCAGCAACAACATGCATG  1753
             || ||||  ||| |||||  ||||||| |||||||
Sbjct  177   TTTGGACAGCAAAGAATTTGGCAACAATATGCATG  211


 Score = 56.5 bits (30),  Expect = 9e-07
 Identities = 30/30 (100%), Gaps = 0/30 (0%)
 Strand=Plus/Plus

Query  2252  TTGAGTGGAGGGTACCGGAATCTGCGGTAG  2281
             ||||||||||||||||||||||||||||||
Sbjct  463   TTGAGTGGAGGGTACCGGAATCTGCGGTAG  492



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 92064122165


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5