BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38010.2 Length=2443 Score E Sequences producing significant alignments: (Bits) Value Ahg482807 jgi|Araly1|482807|fgenesh2_kg.4__1867__AT2G38010.2 3869 0.0 Ahg344410 jgi|Araly1|344410|fgenesh1_pg.C_scaffold_4000752 226 6e-58 > Ahg482807 jgi|Araly1|482807|fgenesh2_kg.4__1867__AT2G38010.2 Length=2408 Score = 3869 bits (2095), Expect = 0.0 Identities = 2268/2354 (96%), Gaps = 2/2354 (0%) Strand=Plus/Plus Query 76 TACTTAATCGGAGTCGGAAGCTATGACATCACTGGTCCTGCCGCTGATGTCAACATGATG 135 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 55 TACTTAATCGGAGTCGGAAGCTATGACATCACTGGTCCAGCCGCTGATGTCAACATGATG 114 Query 136 GGCTACGCAAACTCAGATCAAATCGCTTCCGGTATTCATTTCCGGTTACGAGCTCGTGCC 195 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 115 GGCTACGCAAACTCCGATCAAATCGCTTCCGGGATTCATTTCCGGTTACGAGCTCGTGCC 174 Query 196 TTCATCGTCGCTGAGCCTCAAGGTAACCGCGTCGTGTTTGTCAATCTCGACGCTTGTATG 255 ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 175 TTCATCGTCGCTGAGCCCCAAGGTAACCGCGTCGCATTTGTCAATCTCGACGCTTGTATG 234 Query 256 GCTTCTCAAATCGTTACAATCAAAGTTCTTGAGCGTCTCAAAGCAAGGTATGGTGAGCTT 315 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 235 GCTTCTCAAATCGTCACAATCAAAGTTCTTGAGCGTCTCAAAGCAAGGTATGGTGAGCTT 294 Query 316 TACACAGAGAAGAATGTAGCAATAAGTGGAATTCACACACATGCTGGACCAGGAGGATAT 375 ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| Sbjct 295 TACACAGAGAAGAATGTAGCAATAAGTGGAATTCATACGCATGCTGGACCTGGAGGATAT 354 Query 376 CTTCAATACGTCACATATATTGTGACGTCTCTTGGATTTGTTCGTCAATCTTTTGACGTT 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 355 CTTCAATACGTCACATATATTGTGACGTCTCTTGGATTTGTTCGTCAATCTTTTGATGTT 414 Query 436 GTTGTTAACGGCATTGAGCAAAGCATTGTCCAAGCACACGAAAGCCTACGTCCTGGTTCT 495 ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| Sbjct 415 GTTGTTAACGGCATTGAGCAAAGCATTGTTCAGGCACACGAAAGCCTCCGTCCTGGTTCT 474 Query 496 GCTTTTGTTAACAAAGGGGATCTTTTGGATGCTGGTGTGAATCGAAGTCCGAGTTCTTAT 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 GCTTTTGTTAACAAAGGGGATCTTTTGGATGCTGGTGTGAATCGAAGTCCGAGTTCTTAT 534 Query 556 CTGAACAATCCTGCAGCTGAGAGGAGTAAATATAAGTATGATGTTGATAAGGAAATGACT 615 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 535 CTGAACAATCCTGCAGCTGAGAGGAGTAAATATAAGTATAATGTTGATAAAGAAATGACG 594 Query 616 CTTGTTAAGTTTGTTGATTCTCAGTTGGGACCTACTGGTAGTTTTAACTGGTTTGCTACT 675 ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 595 CTTGTTAAGTTTGTTGATTCTCAGTTGGGGCCTATTGGTAGTTTTAACTGGTTTGCTACT 654 Query 676 CATGGGACTTCCATGAGTCGGACTAACTCGTTGATTAGTGGAGATAACAAAGGCGCTGCA 735 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 655 CATGGGACTTCCATGAGCCGGACTAACTCGTTGATTAGTGGAGATAATAAAGGCGCTGCA 714 Query 736 GCTCGGTTTATGGAGGATTGGTTTGAGAATGGACAGAAGAATTCTGTTAGCTCT-AGAAA 794 || ||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||| Sbjct 715 GCGCGGTTTATGGAGGATTGGTTTGAGAATGGACAGAAGAATTCTGATAG-TTTAAGAAA 773 Query 795 CATCCCTCGGAGAGTATCAACCATTGTTTCTGATTTCAGTAGAAACCGTGAGTCATATCC 854 ||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| Sbjct 774 TATCCCTCGGAGAGTATCAAGCATTGTTTCTGATTTCAGTAGAAACCGTGAGTTAAATCC 833 Query 855 TTTCCTTGAGTTACCTAATGTAGCAATTCTCTACATTGCAGTTGCAGAGAGACTGATGTG 914 |||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 834 TTTCATTGAGTTACCTAATGTAGCAACTCTCTACATTGCAGTTGCAGCGAGACTGATGTG 893 Query 915 GAAAGTTATGGTTTTGTTTTACTTTGTTTCAGAGAGTAGACTTTTGGATATTGCGGCTAC 974 |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 894 GAAAGTTATGGTTTTGTTTTTGTTTGTTTCAGAGAGTAGACTTTTGGATATTGCAGCTAC 953 Query 975 TTATAAGTCATCTAGAGGACATTCTGTGGATAAGTCCCTTGATGTTAAAACCCGAGTAAG 1034 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 TTATAAGTCCTCTAGAGGACATTCTGTGGATAAGTCCCTTGATGTTAAAACCCGAGTAAG 1013 Query 1035 AAACGGTTCGAAGCGTAAATTTGTCTCTGCCTTCTGTCAATCAAACTGTGGTGATGTGAG 1094 |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1014 AAACACTTCGAAGCGTAAATTTGTCTCTGCCTTCTGTCAATCAAACTGTGGTGACGTGAG 1073 Query 1095 TCCAAATACTCTTGGTACCTTTTGCATTGACACTGGACTGCCTTGTGATTTCAATCACAG 1154 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1074 TCCAAATACTCTTGGTACATTTTGCATTGACACTGGACTGCCTTGTGATTTCAATCATAG 1133 Query 1155 TACCTGCAATGGACAGAACGAGTTGTGCTATGGCCGTGGTCCGGGCTACCCTGATGAATT 1214 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 TACTTGCAATGGAAAGAACGAGTTGTGCTATGGCCGTGGTCCGGGCTACCCTGATGAATT 1193 Query 1215 TGAGAGTACACGTATCATTGGAGAAAAGCAATTCAAAATGGCTGTGGAACTTTTTAACAA 1274 |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || Sbjct 1194 TGAGAGTACACGTATCATTGGAGAAAAGCAATTCAAAATGGCAGTAGAACTTTTTAATAA 1253 Query 1275 AGCTACAGAGAAGCTGCAGGGGAAAATTGGTTACCAACATGCGTATCTAGATTTCTCGAA 1334 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1254 AGCTACAGAGAAGCTGCAGGGAAAAATTGGTTACCAACATGCGTATCTAGATTTCTCAAA 1313 Query 1335 TCTTGATGTCACAGTTCCTAAAGCAGGCGGTGGCTCTGAGACGGTTAAGACATGTCCAGC 1394 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1314 TCTTGATGTCACAGTTCCTAAAGCAGGCGGCGGCTCTGAGACAGTTAAGACATGTCCAGC 1373 Query 1395 TGCAATGGGGTTTGGTTTTGCTGCTGGAACAACTGATGGTCCAGGTGCTTTTGATTTCAA 1454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1374 TGCAATGGGGTTTGGTTTTGCTGCTGGAACAACTGATGGTCCAGGTGCTTTTGATTTCAA 1433 Query 1455 ACAAGGAGATGATCAGGGTAATGTGTTTTGGAGACTAGTGAGGAATGTGTTAAGAACTCC 1514 ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1434 ACAAGGAGATGATAAGGGTAATGTGTTTTGGAGACTAGTGAGGAATGTGTTGAGAACTCC 1493 Query 1515 TGGTCCAGAACAGGTCCAATGCCAAAAACCAAAACCCATTTTACTTGACACTGGTGAGAT 1574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1494 TGGTCCAGAACAGGTCCAATGCCAAAAACCAAAACCCATTTTACTTGACACTGGTGAGAT 1553 Query 1575 GAAAGAACCATATGACTGGGCGCCTTCAATTCTTCCGATTCAGATACTTCGCATTGGCCA 1634 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1554 GAAAGAACCATATGACTGGGCGCCTTCAATTCTTCCGATTCAGATACTTCGCGTTGGCCA 1613 Query 1635 ATTAGTCATCCTCAGTGTTCCCGGAGAGTTCACAACAATGGCTGGAAGACGTCTCCGTGA 1694 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1614 ATTAGTCATCCTCAGTGTCCCCGGAGAATTCACAACAATGGCTGGAAGACGTCTCCGTGA 1673 Query 1695 CGCTATCAAGTCTTTTCTCATTTCTTCGGACCCCAAGGAATTCAGCAACAACATGCATGT 1754 |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 1674 TGCTATCAAGTCTTTTCTCATCTCTTTGGACCCCAAGGAATTCAGCAACAACATGCATGT 1733 Query 1755 CGTAATCGCAGGTCTCACCAACACCTATTCTCAGTACATCGCCACTTTCGAAGAGTACGA 1814 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1734 CGTAATCGCAGGTCTCACCAACACATATTCTCAGTACATCGCCACTTTCGAAGAGTACGA 1793 Query 1815 GGTTCAAAGATACGAGGGCGCCTCAACGTTATACGGACGACACACACTCACTGCTTATAT 1874 |||||||||||||||||| || |||||| |||| |||| ||||||||||||||||||||| Sbjct 1794 GGTTCAAAGATACGAGGGAGCTTCAACGCTATATGGACCACACACACTCACTGCTTATAT 1853 Query 1875 CCAAGAGTTCAAGAAACTAGCCACAGCTTTAGTTAACGGTCTAACACTCCCACGTGGTCC 1934 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1854 CCAAGAGTTCAAGAAACTAGCCACAGCTTTGGTTAACGGTCTAACACTCCCACGTGGTCC 1913 Query 1935 GCAACCTCCTGACCTTTTAGACAAACAGATCAGTTTACTATCCCCTGTGGTTGTAGACTC 1994 |||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||| Sbjct 1914 GCAACCGCCTGACCTTTTAGACAAACAGATTAGTTTACTATCCCCTGTAGTCGTAGACTC 1973 Query 1995 AACTCCTCTAGGAGTCAAATTCGGTGACGTCAAAGCTGATGTACCTCCAAAGTCAACGTT 2054 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1974 GACTCCTCTAGGAGTCAAATTCGGTGACGTCAAAGCTGATGTACCTCCAAAGTCAACTTT 2033 Query 2055 CAGGAGAGGTCAACAAGTTAACGCAACGTTTTGGTCAGGATGTCCTCGAAATGATTTGAT 2114 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 2034 CAGGAGAGGTCAACAAGTTAACGCAACGTTTTGGTCGGGATGTCCTCGAAACGATTTGAT 2093 Query 2115 GACTGAAGGATCATTCGCTGTGGTGGAGACGCTGCGTGAGGGAGGGAAATGGGCTCCGGT 2174 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 2094 GACGGAAGGATCATTCGCTGTGGTGGAGACGCTGCGTGAGGGAGGGAAATGGGTTCCAGT 2153 Query 2175 GTATGATGACGATGACTTCAGTTTGAAGTTCAAGTGGTCGAGACCGGCAAAGCTGAGTTC 2234 ||| |||||||||||||||||||||||||| |||||||| |||||||||||||| || || Sbjct 2154 GTACGATGACGATGACTTCAGTTTGAAGTTTAAGTGGTCAAGACCGGCAAAGCTAAGCTC 2213 Query 2235 GGAGAGCCAAGCCACGATTGAGTGGAGGGTACCGGAATCTGCGGTAGCCGGAGTTTATAG 2294 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2214 GGAGAGCCAAGCCACGATTGAGTGGAGGGTACCGGAATCTGCGGTAGCGGGAGTTTATAG 2273 Query 2295 AATAAGACATTATGGAGCTTCTAAGTCGTTGTTTGGATCCATTAGTAGCTTCTCTGGTTC 2354 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2274 AATAAGACATTATGGAGCTTCTAAGTCCTTGTTTGGATCCATTAGTAGCTTCTCTGGTTC 2333 Query 2355 TTCTAGTGCCTTTGTAGTTGTATGACATACTATTGTATACTTTATGAAACAAAAAGAGAA 2414 |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2334 TTCTAGCGCCTTTGTAGTTGTATGACATACTATTGTATACTTTATGAAATAAAAAGAGAA 2393 Query 2415 GAAAAGAGATTTGA 2428 |||||||||||||| Sbjct 2394 GAAAAGAGATTTGA 2407 > Ahg344410 jgi|Araly1|344410|fgenesh1_pg.C_scaffold_4000752 Length=492 Score = 226 bits (122), Expect = 6e-58 Identities = 154/169 (91%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 2062 GGTC-AACAAGTTAACGCAACGTTTTGGTCAGGATGTCCTCGAAA-TGATTTGATGACTG 2119 |||| ||| |||||| || ||||||||||| |||||||||||||| | ||| ||||| | Sbjct 292 GGTCTAAC-AGTTAATGCTACGTTTTGGTCGGGATGTCCTCGAAACT-ATTCGATGAAGG 349 Query 2120 AAGGATCATTCGCTGTGGTGGAGACGCTGCGTGAGGGAGGGAAATGGGCTCCGGTGTATG 2179 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 350 AAGGATCATTCGCTGTGGTGGAGACGCTGCGTGAGGGAGGGAAATGGGTTCCAGTGTATG 409 Query 2180 ATGACGATGACTTCAGTTTGAAGTTCAAGTGGTCGAGACCGGCAAAGCT 2228 | ||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 410 ACGACGATGACTTCAGTTTGAAGTTGAAGTGGTCGAGACCGGCCAAGCT 458 Score = 139 bits (75), Expect = 9e-32 Identities = 83/87 (95%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 1834 GCCTCAACGTTATACGGACGACACACACTCACTGCTTATATCCAAGAGTTCAAGAAACTA 1893 ||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 214 GCCTCAACGCTATATGGACCACACACACTCACTGCTTATATCCAAGAGTTCAAGAAACTA 273 Query 1894 GCCACAGCTTTAGTTAACGGTCTAACA 1920 ||||||||||| ||||||||||||||| Sbjct 274 GCCACAGCTTTGGTTAACGGTCTAACA 300 Score = 121 bits (65), Expect = 3e-26 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1659 AGAGTTCACAACAATGGCTGGAAGACGTCTCCGTGACGCTATCAAGTCTTTTCTCATTTC 1718 ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 117 AGAGTTCACTACAATGGCTGGAAGACGTCTCCGTGACGCTATCAAGTCTTTCCTCATCTC 176 Query 1719 TTCGGACCCCAAGGAATTCAGCAACAACATGCATG 1753 || |||| ||| ||||| ||||||| ||||||| Sbjct 177 TTTGGACAGCAAAGAATTTGGCAACAATATGCATG 211 Score = 56.5 bits (30), Expect = 9e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 2252 TTGAGTGGAGGGTACCGGAATCTGCGGTAG 2281 |||||||||||||||||||||||||||||| Sbjct 463 TTGAGTGGAGGGTACCGGAATCTGCGGTAG 492 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92064122165 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5