BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38120.1
Length=2135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482819 jgi|Araly1|482819|fgenesh2_kg.4__1879__AT2G38120.1 3029 0.0
Ahg918699 jgi|Araly1|918699|Al_scaffold_0705_1 263 4e-69
Ahg476933 jgi|Araly1|476933|fgenesh2_kg.2__2063__AT1G77690.1 263 4e-69
> Ahg482819 jgi|Araly1|482819|fgenesh2_kg.4__1879__AT2G38120.1
Length=1931
Score = 3029 bits (1640), Expect = 0.0
Identities = 1854/1954 (95%), Gaps = 28/1954 (1%)
Strand=Plus/Plus
Query 1 GAAGCATCTTATAGTATTTTTAGcttcattccttcttttgctctgatcaaagtcttctcc 60
|||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1 GAAGCATCTTGTAGTATTTTTAGCTTCATTCCTTCTCTTGCTCAGATCAAAG-------- 52
Query 61 ttcccttctctctctctttcctcctctgcacatttctgggttcttctcttcttatgctct 120
| | | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 53 -T--C-T-TCTCTCTCTTTCCTCCTCTGCACATTTCTGGG---TTCTCTTCTTATGCTCT 104
Query 121 gtttcttttAAGACACAGAAG-AA-ACAGTACAGAGTTGAGATTTTCTTAAACAAAAGTG 178
|||||||| |||||||||||| || | |||||||||||| ||||||||||||| ||||||
Sbjct 105 GTTTCTTTAAAGACACAGAAGAAAGAGAGTACAGAGTTGTGATTTTCTTAAAC-AAAGTG 163
Query 179 AAAAGAGAAGAAACAAGTGACAGCTCAAACGGACAAAAACCACTCTTGGGTCTTTCTTGC 238
|||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 164 AAAA-AGAAGAAACAAGTGACAGCTCAAACGGACAAAAACTAGTCTTGGGTCTTTCTTGT 222
Query 239 TTCTGATTCTTTCTCTTCTCTAATAGAAGAAAACATCTAGAAGCTaaaaaaaTGTCGGAA 298
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 223 TTCTGATTCTTTCTCTTCTCTAAAAGAAGAAAACATCTAGAAGCTAGAAAAATGTCGGAA 282
Query 299 GGAGTAGAAGCGATAGTAGCAAATGACAACGGAACAGATCAGGTAAACGGAAACCGTACC 358
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 283 GGAGTAGAAGCGATAGTAGCAAATGACAACGGAACAGATCAGATGAACGGAAACCGTACC 342
Query 359 GGGAAAGATAACGAAGAACACGACGGCTCCACCGGTTCTAACCTAAGCAATTTCCTATGG 418
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 343 GGAAAAGACAACGAAGAACACGACGGCTCCACCGGTTCTAACCTAAGCAATTTCCTCTGG 402
Query 419 CACGGTGGCTCTGTCTGGGACGCTTGGTTCAGCTGCGCATCTAACCAAGTGGCTCAAGTG 478
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 CATGGTGGCTCTGTCTGGGACGCTTGGTTCAGCTGCGCATCTAACCAAGTGGCTCAAGTG 462
Query 479 TTATTGACATTACCGTACTCGTTTAGTCAACTAGGAATGTTATCAGGAATAGTACTTCAG 538
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 463 CTATTGACATTACCGTACTCGTTTAGTCAATTAGGGATGTTATCAGGAATAGTACTTCAG 522
Query 539 ATCTTCTATGGTTTACTAGGAAGCTGGACTGCTTATCTCATCTCTGTTCTCTACGTCGAA 598
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 523 ATCTTCTATGGTTTACTCGGAAGCTGGACTGCTTATCTCATCTCTGTTCTCTACGTCGAG 582
Query 599 TACAGAGCTCGTAAAGAAAAAGAAGGCAAAAGCTTCAAAAACCACGTCATTCAGTGGTTT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TACAGAGCTCGTAAAGAAAAAGAAGGCAAAAGCTTCAAAAACCACGTCATTCAGTGGTTT 642
Query 659 GAAGTACTTGATGGATTACTTGGTTCATACTGGAAAGCACTAGGACTCGCATTTAATTGC 718
|||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 643 GAAGTACTCGATGGATTACTTGGTTCATATTGGAAAGCAGTAGGACTCGCATTTAATTGC 702
Query 719 ACTTTCCTCTTGTTTGGATCTGTTATCCAACTCATTGCTTGTGCCAGTAACATTTATTAC 778
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 ACTTTTCTCTTGTTTGGATCTGTTATCCAACTCATTGCTTGTGCCAGTAACATTTATTAC 762
Query 779 ATAAACGATCATCTGGACAAGAGAACATGGACTTACATATTTGGCGCGTGTTGTGCAACC 838
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 ATAAACGATCATTTGGACAAGAGAACATGGACTTACATATTTGGCGCGTGTTGTGCAACC 822
Query 839 ACTGTCTTTATACCGTCGTTTCACAATTACCGAATTTGGTCATTCCTTGGCCTTGGAATG 898
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 823 ACTGTCTTTATACCGTCGTTTCATAATTACCGAATTTGGTCGTTCCTTGGCCTTGGTATG 882
Query 899 ACCACTTACACCGCTTGGTACTTAGCCATTGCCTCCATCATCCACGGCCAGGCGGAAGGT 958
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 883 ACCACTTACACCGCTTGGTACTTAGCCATTGCCTCCATCATCCACGGCCAGACGGAGGGT 942
Query 959 GTGAAACATTCAGGTCCAACAAAGCTAGTGCTTTATTTTACGGGAGCCACAAATATTTTG 1018
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 943 GTGAAACACTCAGGTCCAACAAAGCTAGTGCTTTATTTTACCGGAGCCACAAATATTTTG 1002
Query 1019 TACACCTTTGGAGGTCACGCGGTTACTGTTGAGATTATGCATGCTATGTGGAAACCACAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TACACCTTTGGAGGTCACGCGGTTACTGTTGAGATTATGCATGCTATGTGGAAACCACAG 1062
Query 1079 AAGTTTAAGTACATTTACTTGATGGCGACGTTATACGTGTTCACGCTAACGATTCCGTCA 1138
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1063 AAGTTTAAGTACATTTACTTGATGGCGACGTTATACGTTTTCACACTAACTATTCCGTCG 1122
Query 1139 GCTGCCGCCGTTTACTGGGCTTTCGGAGACGCACTTCTCGACCACTCCAACGCTTTCTCT 1198
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1123 GCTGCCGCCGTTTACTGGGCCTTCGGAGACGCACTTCTCGACCACTCCAACGCCTTCTCT 1182
Query 1199 CTTATGCCCAAGAACGCGTGGCGTGACGCCGCTGTTATCCTCATGCTCATTCATCAGTTT 1258
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 CTCATGCCCAAGAACGCGTGGCGTGACGCCGCTGTTATCCTCATGCTCATTCATCAGTTT 1242
Query 1259 ATAACGTTCGGGTTCGCTTGTACACCTTTGTACTTTGTGTGGGAGAAAGTGATTGGGATG 1318
||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1243 ATAACGTTCGGGTTCGCATGTACACCATTGTACTTTGTGTGGGAGAAAGTGATAGGGATG 1302
Query 1319 CATGACACAAAGAGCATTTGCTTAAGGGCTTTGGCTAGATTGCCTGTGGTCATACCTATT 1378
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1303 CATGACACAAAGAGCATTTGCTTAAGGGCTTTGGCTAGATTGCCTGTTGTTATACCGATT 1362
Query 1379 TGGTTCTTAGCTATTATCTTCCCCTTTTTCGGTCCAATCAATTCCGCTGTCGGTGCTCTT 1438
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1363 TGGTTCTTAGCTATTATCTTCCCCTTTTTCGGTCCCATCAATTCCGCCGTCGGTGCTCTT 1422
Query 1439 CTTGTTAGCTTCACCGTCTATATCATCCCATCTCTCGCTCACATGCTCACTTACCGATCT 1498
|| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1423 CTCGTTAGCTTCACCGTCTATATCATCCCTTCCCTCGCTCACATGCTCACTTACCGATCT 1482
Query 1499 GCCTCCGCTCGTCAGAATGCGGCGGAGAAGCCACCGTTCTTTATGCCGAGCTGGACGGCG 1558
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1483 GCCTCCGCTCGTCAGAATGCGGCGGAGAAGCCACCGTTCTTTATGCCAAGCTGGACGGCG 1542
Query 1559 ATGTACGTGTTGAATGCTTTCGTGGTGGTTTGGGTTCTTATAGTCGGATTTGGGTTCGGT 1618
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1543 ATGTATGTGTTGAATGCCTTCGTGGTGGTTTGGGTTCTTATAGTCGGATTCGGGTTCGGT 1602
Query 1619 GGATGGGCTAGTGTAACCAACTTTGTTCGTCAAGTCGACACTTTTGGTCTCTTTGCCAAG 1678
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1603 GGATGGGCTAGTGTAACCAACTTTGTTCGTCAAGTCGATACTTTTGGTCTCTTTGCTAAG 1662
Query 1679 TGTTACCAATGTAAACCAGCTGCAGCCGCCGCACATGCCCCGGTCTCCGCTTTACACCAC 1738
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1663 TGTTACCAATGTAAACCAGCTGCAGCCGCCGCTCATGCTCCGGTCTCTGCTTTACACCAC 1722
Query 1739 CGTCTTTGAGAGATCGAGTCAGGGTTCTTCTAATGCGTTTGTGGAGGGTTCTTAAAATTA 1798
|||| ||||||||||||| ||||| | |||||||| |||||||||||||||||| ||||
Sbjct 1723 CGTCCTTGAGAGATCGAGCCAGGGGTGGTCTAATGCTTTTGTGGAGGGTTCTTAAGATTA 1782
Query 1799 TTTGTTCTTCTTTTGTGTTTTGTGTTCGTATACGTGAAGGGAGTAAAAGTCACGAAAATA 1858
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1783 TTTGTTCTTCTTTTGTGTTTTGTGGTCGTATACGTGA-GGGAGTAAAAGTCACGAAAATA 1841
Query 1859 GTG-TACTTTTTACACACCCCTTTAAATGCGTGCTAAGCTCTTAATTAtttttttctct- 1916
||| | ||||| |||| | | |||||||||||||||||||||||||| ||||||| |||
Sbjct 1842 GTGCT-CTTTT-ACAC-CTC-TTTAAATGCGTGCTAAGCTCTTAATTTTTTTTTTTTCTC 1897
Query 1917 tt-tggggttttgtatttttgttttcactcctta 1949
|| |||||||||||||||||||||||||||||||
Sbjct 1898 TTCTGGGGTTTTGTATTTTTGTTTTCACTCCTTA 1931
> Ahg918699 jgi|Araly1|918699|Al_scaffold_0705_1
Length=552
Score = 263 bits (142), Expect = 4e-69
Identities = 373/480 (78%), Gaps = 34/480 (7%)
Strand=Plus/Plus
Query 1227 CCGCTGTTATCCTCATGCTCATTCATCAGTTTATAACGTTCGGGTTCGCTTGTACACCTT 1286
|||| || ||||||||||||||||||||||||||||| ||||| ||||| | |||||| |
Sbjct 71 CCGCAGTGATCCTCATGCTCATTCATCAGTTTATAACATTCGGATTCGCATCTACACCGT 130
Query 1287 TGTACTTTGTGTGGGAGAAAGTGATTGG-GATGCATGACACAAAGAGCAT-TTGCTTAAG 1344
| || ||||||||||| ||| |||| || | ||||||| || |||||||| || | |||
Sbjct 131 TATATTTTGTGTGGGAAAAATTGATAGGTG-TGCATGAGACGAAGAGCATGTT-CAAAAG 188
Query 1345 GGCTTTGGCTAGATTGCCTGTGGTCATACCTATTTGGTTCTTAGCTATTATCTTCCCCTT 1404
|| |||||||||| || ||||| |||| || ||||||||||| ||||||||||||||
Sbjct 189 AGCCATGGCTAGATTACCCGTGGTTGTACCCATATGGTTCTTAGCCATTATCTTCCCCTT 248
Query 1405 TTTCGGTCCAATCAATTCCGCTGTCGG-TGCTCTTCTT-GTTAGCTTCACCGTCTATATC 1462
|||||| |||||||||||||| ||||| | |||| ||| ||||||||||| || || |||
Sbjct 249 TTTCGGACCAATCAATTCCGCCGTCGGAT-CTCT-CTTAGTTAGCTTCACTGTATACATC 306
Query 1463 ATCCCATC-TCTCGCTCACATGCTCAC-TTACCGATC-TGCCTCCGCTC--GTCAGAATG 1517
||||| | | | ||||| ||||| || || | || ||| ||| || | |||| |
Sbjct 307 ATCCCCGCAT-TGGCTCATATGCTTACCTTTGC--TCCTGC-TCCT-TCAAGAGAGAACG 361
Query 1518 CGGCGGAGA-AGCCACCGTTCTTTATGCCGAGC-TGGACGGCGA-TGTACGTGT-TGAA- 1572
||| ||||| | |||||| | || ||| |||| || || | || || | ||
Sbjct 362 CGGTGGAGAGA-CCACCGCGAGTGGTGG-GAGGATGGATGGGGACT-TAT-TGCATAAAC 417
Query 1573 -TGCTTTCGTGGTGGTTTGGGTTCTTA-TAGTCGGATTTGGGTTCGGTGGATGGGCTAGT 1630
| ||| |||||||||||||| || |||| || || |||||||| |||||||| |||
Sbjct 418 ATA-TTT-GTGGTGGTTTGGGTA-TTCGTAGTTGGGTTCGGGTTCGGAGGATGGGCAAGT 474
Query 1631 GTAACCAACTTTGTTCGTCA-AGTCGACACTTTTGGTCTCTTTGCCAAGTGTTACCAATG 1689
| |||||||||||| || | |||||||||||||||||||| | || || ||||||||
Sbjct 475 ATGGTCAACTTTGTTCGCCAGA-TCGACACTTTTGGTCTCTTTACTAAATGCTACCAATG 533
> Ahg476933 jgi|Araly1|476933|fgenesh2_kg.2__2063__AT1G77690.1
Length=1669
Score = 263 bits (142), Expect = 4e-69
Identities = 373/480 (78%), Gaps = 34/480 (7%)
Strand=Plus/Plus
Query 1227 CCGCTGTTATCCTCATGCTCATTCATCAGTTTATAACGTTCGGGTTCGCTTGTACACCTT 1286
|||| || ||||||||||||||||||||||||||||| ||||| ||||| | |||||| |
Sbjct 918 CCGCAGTGATCCTCATGCTCATTCATCAGTTTATAACATTCGGATTCGCATCTACACCGT 977
Query 1287 TGTACTTTGTGTGGGAGAAAGTGATTGG-GATGCATGACACAAAGAGCAT-TTGCTTAAG 1344
| || ||||||||||| ||| |||| || | ||||||| || |||||||| || | |||
Sbjct 978 TATATTTTGTGTGGGAAAAATTGATAGGTG-TGCATGAGACGAAGAGCATGTT-CAAAAG 1035
Query 1345 GGCTTTGGCTAGATTGCCTGTGGTCATACCTATTTGGTTCTTAGCTATTATCTTCCCCTT 1404
|| |||||||||| || ||||| |||| || ||||||||||| ||||||||||||||
Sbjct 1036 AGCCATGGCTAGATTACCCGTGGTTGTACCCATATGGTTCTTAGCCATTATCTTCCCCTT 1095
Query 1405 TTTCGGTCCAATCAATTCCGCTGTCGG-TGCTCTTCTT-GTTAGCTTCACCGTCTATATC 1462
|||||| |||||||||||||| ||||| | |||| ||| ||||||||||| || || |||
Sbjct 1096 TTTCGGACCAATCAATTCCGCCGTCGGAT-CTCT-CTTAGTTAGCTTCACTGTATACATC 1153
Query 1463 ATCCCATC-TCTCGCTCACATGCTCAC-TTACCGATC-TGCCTCCGCTC--GTCAGAATG 1517
||||| | | | ||||| ||||| || || | || ||| ||| || | |||| |
Sbjct 1154 ATCCCCGCAT-TGGCTCATATGCTTACCTTTGC--TCCTGC-TCCT-TCAAGAGAGAACG 1208
Query 1518 CGGCGGAGA-AGCCACCGTTCTTTATGCCGAGC-TGGACGGCGA-TGTACGTGT-TGAA- 1572
||| ||||| | |||||| | || ||| |||| || || | || || | ||
Sbjct 1209 CGGTGGAGAGA-CCACCGCGAGTGGTGG-GAGGATGGATGGGGACT-TAT-TGCATAAAC 1264
Query 1573 -TGCTTTCGTGGTGGTTTGGGTTCTTA-TAGTCGGATTTGGGTTCGGTGGATGGGCTAGT 1630
| ||| |||||||||||||| || |||| || || |||||||| |||||||| |||
Sbjct 1265 ATA-TTT-GTGGTGGTTTGGGTA-TTCGTAGTTGGGTTCGGGTTCGGAGGATGGGCAAGT 1321
Query 1631 GTAACCAACTTTGTTCGTCA-AGTCGACACTTTTGGTCTCTTTGCCAAGTGTTACCAATG 1689
| |||||||||||| || | |||||||||||||||||||| | || || ||||||||
Sbjct 1322 ATGGTCAACTTTGTTCGCCAGA-TCGACACTTTTGGTCTCTTTACTAAATGCTACCAATG 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80332326705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5