BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G38140.1

Length=575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482821 jgi|Araly1|482821|fgenesh2_kg.4__1881__AT2G38140.1         771    0.0  


> Ahg482821 jgi|Araly1|482821|fgenesh2_kg.4__1881__AT2G38140.1
Length=559

 Score =  771 bits (417),  Expect = 0.0
 Identities = 528/578 (91%), Gaps = 22/578 (4%)
 Strand=Plus/Plus

Query  1    ACTCTCACTGCCTTATCTTCTTCTGGATCTTCTTCTTCGAACAAATTCGAAAACAGCACA  60
            ||||||||| ||||||||||||||   ||||| || || |||||||||||||||||||||
Sbjct  1    ACTCTCACTACCTTATCTTCTTCT---TCTTCCTC-TCCAACAAATTCGAAAACAGCACA  56

Query  61   CGGCGATGGCGTCGCTTATACTCGGAGCTCCTCCGCGAGTCACCGTCGCATTACCTTCCT  120
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| |
Sbjct  57   CGGCGATGGCGTCGCTTATACTCGGAGCTCCTCCGCGAGTCACCGTCGTATTATTTTCTT  116

Query  121  CACGGTTATCAtcttctcactctgaaactgccggtgtctctctctcttgcttcactcatc  180
            ||||||||||||| |||||||| ||||| |||||||||||||||||||||| |||||| |
Sbjct  117  CACGGTTATCATCATCTCACTCAGAAACCGCCGGTGTCTCTCTCTCTTGCTCCACTCAGC  176

Query  181  aattctctctctccacttcctcatccagctcaattccactcGTGTACTGTGGCAGAGGTG  240
            ||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct  177  AATTCTCTCTCTCCACTTCATCTTCCAGCTCAATTCCACTAGTGTACTGTGGTAGAGGTG  236

Query  241  ACCGGAAAACAGCTAAAGGAAAGCGTTTCAATCACTCTTTTGGGAATGCGAGGCCAAGAA  300
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  237  ACCGTAAAACAGCTAAAGGAAAGCGTTTCAATCACTCTTTTGGGAATGCGAGGCCGAGAA  296

Query  301  ACAAGAGCAAAGGAAGAGGACCGGAGAGAGTACCGGTTCCTCCAGCACCACCGAGGAAAG  360
            |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  297  ACAAGAACAAAGGAAGAGGACCAGAGAGAGTACCGGTTCCTCCAGCACCACCGAGGAAAG  356

Query  361  ATAAGTTTGAGAACGACGAGAAGATCAAAATCGATATCGACGAGTCTCTCTTCTCTAATT  420
            |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct  357  ATAAGTATGAGAACGATGAGAAGATCAAAATCGACATCGACGAGTCTCTCTTCTCTAATT  416

Query  421  AGAAATATGAGATTCTTCACTTGTTGTCTCTCACTGTAATTTTAATTTGTTTTTTGAAAA  480
            ||||| ||||||||||||| ||     |    |||||||||||||||||||||| |||| 
Sbjct  417  AGAAA-ATGAGATTCTTCA-TT-----C----ACTGTAATTTTAATTTGTTTTTAGAAAC  465

Query  481  GCTTTG---ATGCTACGACTCTTTTGTTGTTAAAAACATCTCCAAAGTTCTCATCTTTTT  537
             |||||   ||||| |||||||||||||||||||| ||||||||| |||||||||||| |
Sbjct  466  -CTTTGTTGATGCTGCGACTCTTTTGTTGTTAAAA-CATCTCCAA-GTTCTCATCTTTCT  522

Query  538  ATGAAAAGTTTGCTTCTTTATGAATCATTGAGTCTTTT  575
            |||||| |||||||||||||||| ||||||||||||||
Sbjct  523  ATGAAA-GTTTGCTTCTTTATGAGTCATTGAGTCTTTT  559



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21023729539


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5