BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38140.1 Length=575 Score E Sequences producing significant alignments: (Bits) Value Ahg482821 jgi|Araly1|482821|fgenesh2_kg.4__1881__AT2G38140.1 771 0.0 > Ahg482821 jgi|Araly1|482821|fgenesh2_kg.4__1881__AT2G38140.1 Length=559 Score = 771 bits (417), Expect = 0.0 Identities = 528/578 (91%), Gaps = 22/578 (4%) Strand=Plus/Plus Query 1 ACTCTCACTGCCTTATCTTCTTCTGGATCTTCTTCTTCGAACAAATTCGAAAACAGCACA 60 ||||||||| |||||||||||||| ||||| || || ||||||||||||||||||||| Sbjct 1 ACTCTCACTACCTTATCTTCTTCT---TCTTCCTC-TCCAACAAATTCGAAAACAGCACA 56 Query 61 CGGCGATGGCGTCGCTTATACTCGGAGCTCCTCCGCGAGTCACCGTCGCATTACCTTCCT 120 |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | Sbjct 57 CGGCGATGGCGTCGCTTATACTCGGAGCTCCTCCGCGAGTCACCGTCGTATTATTTTCTT 116 Query 121 CACGGTTATCAtcttctcactctgaaactgccggtgtctctctctcttgcttcactcatc 180 ||||||||||||| |||||||| ||||| |||||||||||||||||||||| |||||| | Sbjct 117 CACGGTTATCATCATCTCACTCAGAAACCGCCGGTGTCTCTCTCTCTTGCTCCACTCAGC 176 Query 181 aattctctctctccacttcctcatccagctcaattccactcGTGTACTGTGGCAGAGGTG 240 ||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||| Sbjct 177 AATTCTCTCTCTCCACTTCATCTTCCAGCTCAATTCCACTAGTGTACTGTGGTAGAGGTG 236 Query 241 ACCGGAAAACAGCTAAAGGAAAGCGTTTCAATCACTCTTTTGGGAATGCGAGGCCAAGAA 300 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 237 ACCGTAAAACAGCTAAAGGAAAGCGTTTCAATCACTCTTTTGGGAATGCGAGGCCGAGAA 296 Query 301 ACAAGAGCAAAGGAAGAGGACCGGAGAGAGTACCGGTTCCTCCAGCACCACCGAGGAAAG 360 |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 297 ACAAGAACAAAGGAAGAGGACCAGAGAGAGTACCGGTTCCTCCAGCACCACCGAGGAAAG 356 Query 361 ATAAGTTTGAGAACGACGAGAAGATCAAAATCGATATCGACGAGTCTCTCTTCTCTAATT 420 |||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 357 ATAAGTATGAGAACGATGAGAAGATCAAAATCGACATCGACGAGTCTCTCTTCTCTAATT 416 Query 421 AGAAATATGAGATTCTTCACTTGTTGTCTCTCACTGTAATTTTAATTTGTTTTTTGAAAA 480 ||||| ||||||||||||| || | |||||||||||||||||||||| |||| Sbjct 417 AGAAA-ATGAGATTCTTCA-TT-----C----ACTGTAATTTTAATTTGTTTTTAGAAAC 465 Query 481 GCTTTG---ATGCTACGACTCTTTTGTTGTTAAAAACATCTCCAAAGTTCTCATCTTTTT 537 ||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||| | Sbjct 466 -CTTTGTTGATGCTGCGACTCTTTTGTTGTTAAAA-CATCTCCAA-GTTCTCATCTTTCT 522 Query 538 ATGAAAAGTTTGCTTCTTTATGAATCATTGAGTCTTTT 575 |||||| |||||||||||||||| |||||||||||||| Sbjct 523 ATGAAA-GTTTGCTTCTTTATGAGTCATTGAGTCTTTT 559 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21023729539 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5