BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38540.1
Length=706
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482863 jgi|Araly1|482863|fgenesh2_kg.4__1923__AT2G38540.1 1000 0.0
> Ahg482863 jgi|Araly1|482863|fgenesh2_kg.4__1923__AT2G38540.1
Length=683
Score = 1000 bits (541), Expect = 0.0
Identities = 647/696 (93%), Gaps = 16/696 (2%)
Strand=Plus/Plus
Query 1 CTTCATCATCCATCACTACACACATCTCCTATTGCAAACGAACATAAAACACTACCTAAG 60
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 1 CTTCATCATCCATCACTACACACATCTCCTCTTGCAAACCAACATAAAACACTAACTAAG 60
Query 61 AGATCAATATGGCTGGAGTGATGAAGTTGGCATGCTTGCTCTTGGCCTGCATGATTGTGG 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AGATCAATATGGCTGGAGTGATGAAGTTGGCATGCTTGGTCTTGGCCTGCATGATTGTGG 120
Query 121 CCGGTCCAATCACATCGAACGCTGCGCTAAGCTGTGGCTCAGTTAACAGCAACTTGGCAG 180
|||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 121 CCGGCCCAATCACATCAAACGCGGCTCTAAGCTGTGGCTCAGTTAACAGCAACTTGGCAG 180
Query 181 CGTGCATTGGCTACGTGCTCCAAGGTGGTGTCATTCCCCCAGCGTGTTGCTCCGGCGTTA 240
||||||||||||||||||||||||||||| ||||||| ||| ||| ||| |||| ||||
Sbjct 181 CGTGCATTGGCTACGTGCTCCAAGGTGGTACCATTCCCGCAGGGTGCTGCGCCGGTGTTA 240
Query 241 AAAACCTCAACAGCATAGCCAAGACGACCCCAGACCGTCAGCAAGCTTGCAATTGCATTC 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAACCTCAACAACATAGCCAAGACGACCCCAGACCGTCAGCAAGCTTGCAATTGCATTC 300
Query 301 AAGGTGCCGCTAGAGCCTTAGGCTCTGGTCTCAACGCTGGCCGTGCAGCTGGAATTCCTA 360
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 AAGGTGCCGCTAGAGCCCTAGGCTCTGGTCTCAACGCTGGCCGTGCTGCTGGAATTCCTA 360
Query 361 AGGCATGTGGAGTCAATATTCCTTACAAAATCAGCACCAGCACCAACTGCAAAACCGTGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGCATGTGGAGTCAATATTCCTTACAAAATCAGCACCAGCACCAACTGCAAAACCGTGA 420
Query 421 GGTGATGAGCTAGCAACGGTGAGATGATGCTACTACCGGAAGTTTCGAATCCTTATTATA 480
|||||||||| | | ||| |||||| ||||||| |||||||||||||||| |||||||
Sbjct 421 GGTGATGAGC-A--A--GGTCAGATGAAGCTACTAGCGGAAGTTTCGAATCCCTATTATA 475
Query 481 TAATGGATGAGATTAATATTAAATAAGATGTTCGAATGTTTGTTTTTAGAGTTTTTAATT 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 476 TAATGGATGAGATTAATATTAAATAAGATGTTCGAATGGTTGTTTTTAGAGTTTTTAATT 535
Query 541 TCTTGTCTTTTTCTATTGTGGTGTTCTTGTTATATGGGTTTGTCTGTACTATGTTCGCAG 600
|||||||||||||||||||| ||||||| |||| || || ||||||| |||||||||||
Sbjct 536 TCTTGTCTTTTTCTATTGTGATGTTCTTATTATGTG--TT-GTCTGTATTATGTTCGCAG 592
Query 601 GCAACAACGTTATATGAAATTTCAGAGTACTTGAAGTTTAAGTTTTTCTATATTCTTACT 660
| |||| |||||| |||||||||| ||||||||||||||| |||||||||||||||
Sbjct 593 --A-CAACTTTATATAAAATTTCAGA---CTTGAAGTTTAAGTTATTCTATATTCTTACT 646
Query 661 TATTAAATCTT--GCATTAGTTTAATCGATATGAAA 694
|||||| ||| |||||||||||||||||||||||
Sbjct 647 AATTAAAGCTTTTGCATTAGTTTAATCGATATGAAA 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25961706477
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5