BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38740.1 Length=1165 Score E Sequences producing significant alignments: (Bits) Value Ahg934625 jgi|Araly1|934625|scaffold_402613.1 1273 0.0 Ahg933654 jgi|Araly1|933654|scaffold_401642.1 627 7e-179 Ahg920276 jgi|Araly1|920276|scaffold_101557.1 627 7e-179 > Ahg934625 jgi|Araly1|934625|scaffold_402613.1 Length=780 Score = 1273 bits (689), Expect = 0.0 Identities = 750/779 (96%), Gaps = 5/779 (1%) Strand=Plus/Plus Query 99 TTTCTTCGGGTCTCATCACAATGAATGGCTTCTCTGATCTTAATCCTTCT--GAG-AGCA 155 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| Sbjct 3 TTTCTTCGGGTCTCATCACAATGAATGGCTTTTCTGATCTTAATCCTTCTGAGAGCAGCA 62 Query 156 AACCTTCTCTGTCACAACTAGCTCCATTAGAAGCCATTCTGTTTGATGTTGATGGAACAC 215 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 63 AACCTTCTCTGTCACATTTAGCTCCATTAGAAGCCATTCTGTTTGATGTTGATGGAACAC 122 Query 216 TCTGTGACTCAGATCCCATCCACCTTATTGCCTTCCAAGAACTGCTTCAAGAGATTGGTT 275 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 TCTGTGATTCAGATCCCATCCACCTTATTGCCTTCCAAGAACTGCTTCAAGAGATTGGTT 182 Query 276 TTAACAATGGTGTCCCAATCGATGAGAAATTCTTTGTTGAGAACATTGCTGGAAAACACA 335 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 183 TTAACAATGGTGTCCCAATTGATGAGAAATTCTTTGTTGAGAATATTGCTGGAAAACACA 242 Query 336 ATTCTGAAATTGCTCTACTTCTGTTCCCTGATGATGTTTCAAGAGGGTTAAAATTCTGTG 395 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 243 ATTCTGAAATTGCTCAAATTCTGTTCCCTGATGATGTTTCAAGAGGGTTAAAATTCTGTG 302 Query 396 ATGAAAAGGAAGCTCTTTACCGCAAAATTGTTGCAGAGAAGATAAAGCCACTTGATGGGC 455 |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 303 ATGAGAAGGAAGCTCTTTATCGCAAAATTGTTGCAGAAAAGATAAAGCCACTTGATGGGC 362 Query 456 TTATAAAACTGACCAAATGGATCGAAGATCGTGGATTGAAACGAGCTGCGGTAACAAACG 515 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 363 TTATAAAACTGACCAAATGGATCGAAGATCGTGGATTGAAACGAGCTGCGGTTACAAACG 422 Query 516 CTCCAAAAGAAAACGCAGAGCTCATGATATCGAAACTTGGTCTGACTGATTTCTTTCAAG 575 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 423 CTCCAAAAGAAAACGCAGAGCTCATGATATCAAAACTTGGTCTGACTGATTTCTTTCAAG 482 Query 576 CAGTGATTCTTGGCTCTGAATGTGAATTTCCCAAACCACACCCTGGACCTTACTTGAAGG 635 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 483 CAGTGATTCTTGGCTCTGAATGTGAACATCCCAAACCACACCCTGGACCTTACTTGAAGG 542 Query 636 CTCTTGAAGTGCTTAACGTGTCAAAGGAGCACACGCTAGT-TTTCGAAGACTCGATCTCT 694 |||| |||||||||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct 543 CTCTCAAAGTGCTTAACGTGTCAAAGGAGCACACTTTAGTGTTT-GAAGACTCGATCTCT 601 Query 695 GGGATAAAAGCTGGAGTTGCAGCTGGAATGCCAGTGATTGGACTGACTACAGGGAATCCA 754 |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| Sbjct 602 GGGATAAAAGCTGGAGTTGCAGCTGGAATGCCTGTGATTGGACTCACTACAGGTAATCCA 661 Query 755 GCAAGCCTGCTTATGCAAGCAAAACCCGCTTTTCTCATCGAGAACTATGCGGATCCAAAA 814 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 GCAAGCCTGCTTGTGCAAGCAAAACCCGCTTTTCTCATCGAGAACTATGCGGATCCAAAA 721 Query 815 CTGTGGGCTGTGTTGGAAGAACTTGATAACAAGTCTTAAGTCTCACTTGTTTGGCTTAT 873 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 722 CTGTGGGCTGTGTTGGAAGAACTTGATAACAAGTCGTAAGTCTCACTTGTTTGGCTTAT 780 > Ahg933654 jgi|Araly1|933654|scaffold_401642.1 Length=547 Score = 627 bits (339), Expect = 7e-179 Identities = 373/390 (96%), Gaps = 0/390 (0%) Strand=Plus/Plus Query 324 CTGGAAAACACAATTCTGAAATTGCTCTACTTCTGTTCCCTGATGATGTTTCAAGAGGGT 383 ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 127 CTGGAAAACACAATTCTGAAATTGCTCGAGTTCTGTTCCCTGATGATGTTTCAAGAGGGT 186 Query 384 TAAAATTCTGTGATGAAAAGGAAGCTCTTTACCGCAAAATTGTTGCAGAGAAGATAAAGC 443 ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||| Sbjct 187 TAAAATTCTGTGATGAAAAAGAAGCTCTTTATCGCAAAATTGTTGCAGAAAAGACAAAGC 246 Query 444 CACTTGATGGGCTTATAAAACTGACCAAATGGATCGAAGATCGTGGATTGAAACGAGCTG 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 247 CACTTGATGGGCTTATAAAACTGACCAAATGGATCGAAGATCGTGGATTGAAACGAGCTG 306 Query 504 CGGTAACAAACGCTCCAAAAGAAAACGCAGAGCTCATGATATCGAAACTTGGTCTGACTG 563 || | |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 307 CGATTACAAACGCTCCAAAAGAAAACGCAGAGCTCATGATATCGAAACTTGGTTTGACTG 366 Query 564 ATTTCTTTCAAGCAGTGATTCTTGGCTCTGAATGTGAATTTCCCAAACCACACCCTGGAC 623 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 367 ATTTCTTTCAAGCAGTGATTCTTGGCTCTGAATGTGAACATCCCAAACCACACCCTGGAC 426 Query 624 CTTACTTGAAGGCTCTTGAAGTGCTTAACGTGTCAAAGGAGCACACGCTAGTTTTCGAAG 683 |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 427 CTTACTTGAAGGCTCTTGAAGTGCTTAACGTGTCAAAGGAGCACACACTAGTGTTCGAAC 486 Query 684 ACTCGATCTCTGGGATAAAAGCTGGAGTTG 713 |||| |||||| |||| ||||||||||||| Sbjct 487 ACTCTATCTCTAGGATTAAAGCTGGAGTTG 516 > Ahg920276 jgi|Araly1|920276|scaffold_101557.1 Length=547 Score = 627 bits (339), Expect = 7e-179 Identities = 373/390 (96%), Gaps = 0/390 (0%) Strand=Plus/Plus Query 324 CTGGAAAACACAATTCTGAAATTGCTCTACTTCTGTTCCCTGATGATGTTTCAAGAGGGT 383 ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 127 CTGGAAAACACAATTCTGAAATTGCTCGAGTTCTGTTCCCTGATGATGTTTCAAGAGGGT 186 Query 384 TAAAATTCTGTGATGAAAAGGAAGCTCTTTACCGCAAAATTGTTGCAGAGAAGATAAAGC 443 ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||| Sbjct 187 TAAAATTCTGTGATGAAAAAGAAGCTCTTTATCGCAAAATTGTTGCAGAAAAGACAAAGC 246 Query 444 CACTTGATGGGCTTATAAAACTGACCAAATGGATCGAAGATCGTGGATTGAAACGAGCTG 503 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 247 CACTTGATGGGCTTATAAAACTGACCAAATGGATCGAAGATTGTGGATTGAAACGAGCTG 306 Query 504 CGGTAACAAACGCTCCAAAAGAAAACGCAGAGCTCATGATATCGAAACTTGGTCTGACTG 563 |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 307 CGGTTACAAACGCTCCAAAAGAAAACGCAGAGCTCATGATATCGAAACTTGGTTTGACTG 366 Query 564 ATTTCTTTCAAGCAGTGATTCTTGGCTCTGAATGTGAATTTCCCAAACCACACCCTGGAC 623 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 367 ATTTCTTTCAAGCAGTGATTCTTGGCTCTGAATGTGAACATCCCAAACCACACCCTGGAC 426 Query 624 CTTACTTGAAGGCTCTTGAAGTGCTTAACGTGTCAAAGGAGCACACGCTAGTTTTCGAAG 683 |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 427 CTTACTTGAAGGCTCTTGAAGTGCTTAACGTGTCAAAGGAGCACACACTAGTGTTCGAAC 486 Query 684 ACTCGATCTCTGGGATAAAAGCTGGAGTTG 713 |||| |||||| |||| ||||||||||||| Sbjct 487 ACTCTATCTCTCGGATTAAAGCTGGAGTTG 516 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43460125380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5