BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38780.1
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321574 jgi|Araly1|321574|fgenesh1_pm.C_scaffold_4001631 2119 0.0
Ahg344420 jgi|Araly1|344420|fgenesh1_pg.C_scaffold_4000762 619 2e-176
Ahg900330 jgi|Araly1|900330|Al_scaffold_0004_980 577 1e-163
Ahg942771 jgi|Araly1|942771|scaffold_603315.1 390 1e-107
> Ahg321574 jgi|Araly1|321574|fgenesh1_pm.C_scaffold_4001631
Length=1377
Score = 2119 bits (1147), Expect = 0.0
Identities = 1301/1375 (95%), Gaps = 11/1375 (1%)
Strand=Plus/Plus
Query 35 CCACAAGTCTGTGAAAACATTG-CACTCCAAAAATGGCTAACCAGCTCTTCTCTCCACCA 93
|||| ||||| || |||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 10 CCACGAGTCTTTG-AAACTTTGCCACTCCAAAAATGGCTAACCAGCTCTTCTCTGCACCA 68
Query 94 AACCATGGCTTCTTTCAACCACTCTTGGCTCTCTTCTCCACTCACCGAAACTCCCGCTTT 153
| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 69 ACCCATGGCTTCTTTCAACCACTCCTGGCTCTCTTCTCCACTCACCGAAACTCCTACTTG 128
Query 154 CtttttttCTCCATCTCAACACCCAAAATCCTTGAAACTCTCACTTTTCCGAACTCGGAG 213
|||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 129 CTTTTTGTATCCATCCCAACAGCCAAAATCCTTGAAACTCTCACTTTTCCGAACTCGGAG 188
Query 214 CAACTCGTCCTCACCGGACCGCTCGTCAGAGGTTGAGCTCGATGTGGATCCGGTGAAGCT 273
||| | ||||| |||| |||||||| ||||||||||||| |||||||||||||||||
Sbjct 189 CAA--C-TCCTCGTCGGAACGCTCGTCGGAGGTTGAGCTCGCCGTGGATCCGGTGAAGCT 245
Query 274 CGCATTGAAGAAAGCCGAAGCTTATAAGAAATCGAAATCAGAGCaaaaaaaaCCAGAGAA 333
|||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||| |
Sbjct 246 TGCATTGAAGAAAGCCGAAGCTTATAAGAAATCGAAATCGGAGGGAAAAGAACGAGAGCA 305
Query 334 AAATGCCGGCGACGAGGAATTGCCGCTCTCTGTTAAGGCTGCTATGCAAAAAGCCAATGA 393
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 306 AAATGCCGGCGACGAGGAATTGCCGCTCTCGGTTAAGGCTGCTATGCAAAAAGCCAATGA 365
Query 394 TTATAAGAAAAGGAAAGGACTTGGAACTGATGCTGTCGCA-AAAGCTAAACCCAGTAATA 452
||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||
Sbjct 366 CTATAAGAAAAGGAAAGGGCTTGGAACTGATGCTGTCG-AGGAAGCTAAACCCAGTAGTA 424
Query 453 CAGATCAAAGTTTCGTTAGATTAGCAAATAAGGTTGTTGAAGATAATGATGTTAAGAAGA 512
|||| |||||||| ||||||| | |||| |||||||||||||||||||||||||||||||
Sbjct 425 CAGAGCAAAGTTTTGTTAGATCATCAAACAAGGTTGTTGAAGATAATGATGTTAAGAAGA 484
Query 513 AAGAATTGAAAGTCTCCAGCATTGATTTCATGGGGCTTGGCTTTGCTGATAAGAAGAGCA 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 485 AAGAATTGAAAGTCTCCAGCATTGATTTCATGGGGCTTGGCTTTGCTGATAAGAAAAGCA 544
Query 573 CGAGGGGGCTTCCAGCGGGACTTGTTCCTGTTGTTGACTATCTTCCTGAAGGAGACTTAC 632
| || |||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 545 CAAGAGGGCTTCCAGCGGGACTTGTTCCTATTGTCGACTATCTTCCTGAAGGAGACTTAC 604
Query 633 CTGAGGTGGAGTTTATTGTTGGTGATAAAACAAGATTTGCGGAGAAAGTAAAGGAGGTTG 692
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 605 CTGAGGTGGAGTTTATTGTTGGTGATAAAACAAGATTTGCGGAGAAAGTAAAGGAGGTCG 664
Query 693 AGCAAGAAGGAGATGGAAACTCTGATGTGTATAAACCCAAAGTTTCTACATGGGGAGTTT 752
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 665 AGCAAGAAGGAGATGGAAACTCTGATGTGTATAAGCCCAAAGTTTCTACATGGGGAGTTT 724
Query 753 TCCCAAGACCTAGCAACATCTCTAAGACGTTTGGTGGTGGAAGGACACTCCGACCGGGGG 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TCCCAAGACCTAGCAACATCTCTAAGACGTTTGGTGGTGGAAGGACACTCCGACCGGGGG 784
Query 813 ATTCAGTTGAGACCGCTGAAGAGAGGATTGTGAGAGAAGAAAAGACaaaaaaaTTGCTCA 872
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 785 ATTCAGTTGAGACCGCTGAAGAGAGGATTGTGAGAGAAGAACAGACAAAAAAATTGCTCA 844
Query 873 TAGCCTACAAGGAATCACTCGGACTGAACATTGATCCCAAACTCAAACTTGAGTGTGAGA 932
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TAGCCTACAAGGAATCAATCGGACTGAACATTGATCCCAAACTCAAACTTGAGTGTGAGA 904
Query 933 AGGCAATAGACGAGGGGAACTCGCTTATGGATTCTGGGAAACTCAAGGAAGCTTTGCCAT 992
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 AGGCAATAGAAGAGGGGAACTCGCTTATGGATTCTGGGAAACTCAAGGAAGCTTTGCCAT 964
Query 993 ACTATGAAAAGGTCATGGAGAAAATAGTTTTCAAGAGTGAGCTTCATGGACTAGCGGCTT 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 ACTATGAAAAGGTCATGGAGAAAATAGTTTTCAAGAGTGAGCTTCATGGACTAGCGGCTT 1024
Query 1053 TGCAGTGGTCTATTTGTCAGGATTCACTTCGAAAGACAGACAAAGCAAGGCGCATGTATG 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 TGCAGTGGTCTATTTGTCAGGATTCACTTCGAAAGACAGACAAAGCAAGGCGCATGTATG 1084
Query 1113 AGAAGCTTATTTCCCATCCAAACCCGGGAGTGAGCAAGAAAGCGAGGCAGTTCATGTTCA 1172
|||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1085 AGAAGCTTATATCCCACCCAAACTCGGGAGTGAGCAAGAAAGCGAGGCAGTTCATGTTCA 1144
Query 1173 GTTTTCAGGCAATGGAGATGCTGAAGGTTAAGGGGTCGAGCTT--TGCTGAAGGAAACAC 1230
||||||||||||||||||||||||||||||||||||||||||| | | || ||||||||
Sbjct 1145 GTTTTCAGGCAATGGAGATGCTGAAGGTTAAGGGGTCGAGCTTCAT-C-GATGGAAACAC 1202
Query 1231 TGGTTATCAGGACTACTTTGAAGCCTTTGTTGAAGATAAAACGAATTACAAAGCGCAGGA 1290
|||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||| ||
Sbjct 1203 TGGTTATCAGGACTACTTTGAAGCCTTTGTCAAAGATAATACGGATTACCAAGCGCAAGA 1262
Query 1291 GGAAAAAGAAGGAGAGGAAATGGGGATAAATGAGACACTCCTATATGTGATTCTTCTTGC 1350
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 AGAAAAAGAAGGAGAGGCAATGGGGATAAATGAGACACTCCTATATGTGATTCTTCTTGC 1322
Query 1351 TTCTCCGATTCTAATGGTCTTCATTGTAGCTGCACAGAGAGGGTATACACACTGA 1405
|||||||||||||||||||||||||| ||||||||||||||| ||| ||||||
Sbjct 1323 GTCTCCGATTCTAATGGTCTTCATTGTGGCTGCACAGAGAGGGAATATGCACTGA 1377
> Ahg344420 jgi|Araly1|344420|fgenesh1_pg.C_scaffold_4000762
Length=600
Score = 619 bits (335), Expect = 2e-176
Identities = 542/630 (86%), Gaps = 62/630 (10%)
Strand=Plus/Plus
Query 780 CGTTTGGTGGTGGAAGGACACTCCGACCGGGGGATTCAGTTGAGACCGCTGAAGAGAGGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 29 CGTTTGGTGGTGGAAGGACACTCCGACCGGGGGATTCAGTTGAGACCGCTGAAGAGAGGA 88
Query 840 TTGTGAGAGAAGAAA-AGACaaaaaaaTTGCTCATAGCCTACAAGGAATCACTCGGACTG 898
||||||||||| || ||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 89 TTGTGAGAGAA-AAGCAGACAAAAAAATTTCTCATAGCCTACAAGGAATCAATCGGACTG 147
Query 899 AACATTGATCCCAAACTCAAACTTGAGTGTGAGAAGGCAATAGACGAGGGGAACTCGCTT 958
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 AATATTGATCCCAAACTCAAACTTGAGTGTGAGAAGGCAATAGACGAGGGGAACTCGCTT 207
Query 959 ATGGATTCTGGGAAACTCAAGGAAGCTTTGCCATACTATGAAAAGGTCATGGAGAAAATA 1018
||||||||||||| ||||||||||||||||||||||||||||||| | | |
Sbjct 208 ATGGATTCTGGGAGACTCAAGGAAGCTTTGCCATACTATGAAAAG---A-G-------T- 255
Query 1019 GTTTTCAAGAGTGAGCTTCATGGACTAGCGGCTTTGCAGTGGTCTATTTGTCAGGATTCA 1078
| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 G-----A-G------CTTCATGGACTAGCGGCTTTGCAGTGGTCTATTTGTCAGGATTCA 303
Query 1079 CTTCGAAAGACAGACAAAGCAAGGCGCATGTATGAGAAGCTTATTTCCCATCCAAACCCG 1138
||||||||| | | || |||||||||||||| | ||||| || || |||
Sbjct 304 CTTCGAAAG-C-G-CA------------TGTATGAGAAGCTTCTATCCCACCCGAATCCG 348
Query 1139 GGAGTGAGCAAGAAAGCGAGGCAGTTCATGTTCAGTTTTCAGGCAATGGAGATGCTGAAG 1198
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 349 AGAGTGAGCAAGAAAGCGAGGCAGTTGATGTTCAGTTTTCAGGCAATGGAGATGCTGAAG 408
Query 1199 GTTAAGGGGTCGAGCTTTGCTGAAGG-AAACACTGGTTATCAGGACTACTTTGAAGCCTT 1257
||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 409 GTTAAGGGGTCGAGCTTCA-TGGAGGGAAACACTGGTTATCAGGACTACTTTGAAGCCTT 467
Query 1258 TGTTGAAGATAAAACGAATTACAAAGCGCAGGAGGAAAAAGAAGGAGAGGAAATGGGGAT 1317
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 468 TGACAAAGATAAAACGAATTACAAAGCGCAGGAGGAAAAAGAAGGAGAGGCAATGGGGAT 527
Query 1318 AAATGAGACACTCCTATATGTGATTCTTCTTGCTTCTCCGATTCTAATGGTCTTCATT-- 1375
| || | | |||||| |||| ||||||||||||||||||||||||
Sbjct 528 A--TG------T-------G--ATTCTTTTTGCGTCTCCGATTCTAATGGTCTTCATTTT 570
Query 1376 GTAGCTGCACAGAGAGGGTATACACACTGA 1405
|| ||||||| ||||||| ||| ||||||
Sbjct 571 GTGGCTGCACTGAGAGGGAATATGCACTGA 600
> Ahg900330 jgi|Araly1|900330|Al_scaffold_0004_980
Length=426
Score = 577 bits (312), Expect = 1e-163
Identities = 383/417 (92%), Gaps = 5/417 (1%)
Strand=Plus/Plus
Query 1026 AGAGTGAGCTTCATGGACTAGCGGCTTTGCAGTGGTCTATTTGTCAGGATTCACTTCGAA 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 AGAGTGAGCTTCATGGACTAGCGGCTTTGCAGTGGTCTATTTGTCAGGATTCACTTCGAA 70
Query 1086 AGACAGACAAAGCAAGGCGCATGTATGAGAAGCTTATTTCCCATCCAAACCCGGGAGTGA 1145
|| |||| |||||||||||||| |||||||||||| | ||||| || || ||| ||||||
Sbjct 71 AGGCAGAAAAAGCAAGGCGCATATATGAGAAGCTTCTATCCCACCCGAATCCGAGAGTGA 130
Query 1146 GCAAGAAAGCGAGGCAGTTCATGTTCAGTTTTCAGGCAATGGAGATGCTGAAGGTTAAGG 1205
||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 131 GCAAGAAAGCGAGGCAGTTGATGTTCAGTTTTCAGGCAATGGAGAGGCGGAAGGTTAAGG 190
Query 1206 GGTCGAGCTTTGCTGAAGG-AAACACTGGTTATCAGGACTACTTTGAAGCCTTTGTTGAA 1264
|||||||||| || ||| |||||||||||||||||||||||||| ||||||||| ||
Sbjct 191 GGTCGAGCTTCA-TGGAGGGAAACACTGGTTATCAGGACTACTTTGTAGCCTTTGTCAAA 249
Query 1265 GATAAAACGAATTACAAAGCGCAGGAGGAAAAAGAAGGAGAGGAAATGGGGATAAATGAG 1324
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 250 GATAAAACGAATTACAAAGCGCAGGAGGAAAAAGAAGGAGAGGCAATGGGGACAAATGAG 309
Query 1325 ACACTCCTATATGTGATTCTTCTTGCTTCTCCGATTCTAATGGTCTTCATT--GTAGCTG 1382
||||||||||||||||||||| |||| |||||||||||||||||||||||| || ||||
Sbjct 310 ACACTCCTATATGTGATTCTTTTTGCGTCTCCGATTCTAATGGTCTTCATTTTGTGGCTG 369
Query 1383 CACAGAGAGGGTATACACACTGAAGACACAAATTCTTGTCAATTTCTT-ACATGTAA 1438
||||||||||| ||| |||||||| |||||| ||||||||| ||||| ||||||||
Sbjct 370 CACAGAGAGGGAATATGCACTGAAGTCACAAAATCTTGTCAACTTCTTTACATGTAA 426
> Ahg942771 jgi|Araly1|942771|scaffold_603315.1
Length=433
Score = 390 bits (211), Expect = 1e-107
Identities = 243/259 (94%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 525 TCTCCAGCATTGATTTCATGGGGCTTGGCTTTGCTGATAAGAAGAGCACGAGGGGGCTTC 584
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 136 TCTCTAGCATTGATTTCATTGGGCTTGGCTTTGCTGATAAGAAGAGCACAAGGGGACTTC 195
Query 585 CAGCGGGACTTGTTCCTGTTGTTGACTATCTTCCTGAAGGAGACTTACCTGAGGTGGAGT 644
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 196 CAGCGGGACTTGTTCCTGTTGTTGACTATCTTCCTCAAGGAGACCTACCTGAGGTGGAGC 255
Query 645 TTATTGTTGGTGATAAAACAAGATTTGCGGAGAAAGTAAAGGAGGTTGAGCAAGAAGGAG 704
|||||||||||||| ||||||||||||| |||||| ||||||||| |||||||||||||
Sbjct 256 TTATTGTTGGTGATCAAACAAGATTTGCTAAGAAAGAAAAGGAGGTGGAGCAAGAAGGAG 315
Query 705 ATGGAAACTCTGATGTGTATAAACCCAAAGTTTCTACATGGGGAGTTTTCCCAAGACCTA 764
|||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 316 ATGGTAACTCTCATGTATATAAGCCCAAAGTTTCTACATGGGGAGTTTTCCCAAGACCTA 375
Query 765 GCAACATCTCTAAGACGTT 783
|||||||||||||||||||
Sbjct 376 GCAACATCTCTAAGACGTT 394
Score = 137 bits (74), Expect = 2e-31
Identities = 88/95 (93%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 316 GCaaaaaaaaCCAGAGAAAAATGCCGGCGACGAGGAATTGCCGCTCTCTGTTAAGGCTGC 375
||||||| || |||||||||||| ||||||| ||||||||||||||| ||||| |||||
Sbjct 1 GCAAAAAGAAGGAGAGAAAAATGCAGGCGACGGGGAATTGCCGCTCTCGGTTAAAGCTGC 60
Query 376 TATGCAAAAAGCCAATGATTATAAGAAAAGGAAAG 410
|||||||||||||||||||||||||||||||||||
Sbjct 61 TATGCAAAAAGCCAATGATTATAAGAAAAGGAAAG 95
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57173457745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5