BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G38870.1

Length=608
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482903 jgi|Araly1|482903|fgenesh2_kg.4__1963__AT2G38870.1         621    2e-177


> Ahg482903 jgi|Araly1|482903|fgenesh2_kg.4__1963__AT2G38870.1
Length=520

 Score =  621 bits (336),  Expect = 2e-177
 Identities = 471/530 (89%), Gaps = 34/530 (6%)
 Strand=Plus/Plus

Query  3    AAAATCAGAAGTGTCAAAGCTTTTACCAAACAAATTAATAATGTCAACGAAGGGGCTATT  62
            |||| || ||||||||||||||||||||||||||||||||||||||| | |||||  | |
Sbjct  1    AAAACCATAAGTGTCAAAGCTTTTACCAAACAAATTAATAATGTCAAGGGAGGGG--A-T  57

Query  63   AAAAGCTGGTTTCGTCAAAGTTTGACTTTTGAATCTGCAACCTCACCGACGACACCGACA  122
                 |  |   |  |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  58   -----C--G---C--CAAAGTTTGACTTTTGAATCTGCAACCTCATCGACGACACCGACA  105

Query  123  CCAAGACGTAACGTACGTATCCGATTC--TATAAATGGGACTCAAATCTCTAAAGGTGAG  180
            ||||| |    |   | ||||||||||  ||||||||||||| ||||| |||||| ||||
Sbjct  106  CCAAG-C----C---C-TATCCGATTCTATATAAATGGGACTAAAATCCCTAAAGATGAG  156

Query  181  CATACAAATACATCAGAAGACTACATAAATATATACAAGAGTGAAGAAAAATGTCGACCG  240
            |||||||||||||||  | |||||||||||||||||||||| |||||||||||||| |||
Sbjct  157  CATACAAATACATCA-CA-ACTACATAAATATATACAAGAGGGAAGAAAAATGTCGTCCG  214

Query  241  AATGTCCTAGGAAGAACTCGTGGCCGGAGCTTACGGGAACAAATGGTGACTATGCGGCCG  300
            |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
Sbjct  215  AATGTCCTAGGAAGAACTCGTGGCCGGAACTTAGGGGAACAAATGGTGACTATGCGGCGG  274

Query  301  TGGTGATAGAGAGAGAGAACCCCACCGTCAATGCTGCCGTGATTTTGGATGGGAGTCCGG  360
             ||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||
Sbjct  275  CGGTGATAGAGAGAGAGAACCCAACCGTCGATGCTGTCGTGATTTTGGATGGGAGTCCGG  334

Query  361  TGACCGCAGACTTCAGGTGCGACCGGGTCAGAGTTTTTGTTGATGGAAACCGTATCGTCG  420
            ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct  335  TGACCGCAGACTTCAGGTGCGACCGGGTCAGGGTTTTTGTTGATAGAAACCGTATCGTCG  394

Query  421  TCAAAACCCCCAAATCCGGCTAGACTTGTATAATTTCTATATTCAT-AA-TGAA-AAAGC  477
            |||||||||| | ||||||||||||||||||||||||||||| ||| || | || |||||
Sbjct  395  TCAAAACCCCTACATCCGGCTAGACTTGTATAATTTCTATATGCATTAAAT-AAGAAAGC  453

Query  478  TATAGACGA-GTCGTGGTTGGTTAGTAATCAATCATGTAAAATAATAATC  526
            ||||||||| | ||||||||||||||||||| |||||||||||||| |||
Sbjct  454  TATAGACGATG-CGTGGTTGGTTAGTAATCAGTCATGTAAAATAATTATC  502



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22225660611


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5