BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38870.1 Length=608 Score E Sequences producing significant alignments: (Bits) Value Ahg482903 jgi|Araly1|482903|fgenesh2_kg.4__1963__AT2G38870.1 621 2e-177 > Ahg482903 jgi|Araly1|482903|fgenesh2_kg.4__1963__AT2G38870.1 Length=520 Score = 621 bits (336), Expect = 2e-177 Identities = 471/530 (89%), Gaps = 34/530 (6%) Strand=Plus/Plus Query 3 AAAATCAGAAGTGTCAAAGCTTTTACCAAACAAATTAATAATGTCAACGAAGGGGCTATT 62 |||| || ||||||||||||||||||||||||||||||||||||||| | ||||| | | Sbjct 1 AAAACCATAAGTGTCAAAGCTTTTACCAAACAAATTAATAATGTCAAGGGAGGGG--A-T 57 Query 63 AAAAGCTGGTTTCGTCAAAGTTTGACTTTTGAATCTGCAACCTCACCGACGACACCGACA 122 | | | |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 58 -----C--G---C--CAAAGTTTGACTTTTGAATCTGCAACCTCATCGACGACACCGACA 105 Query 123 CCAAGACGTAACGTACGTATCCGATTC--TATAAATGGGACTCAAATCTCTAAAGGTGAG 180 ||||| | | | |||||||||| ||||||||||||| ||||| |||||| |||| Sbjct 106 CCAAG-C----C---C-TATCCGATTCTATATAAATGGGACTAAAATCCCTAAAGATGAG 156 Query 181 CATACAAATACATCAGAAGACTACATAAATATATACAAGAGTGAAGAAAAATGTCGACCG 240 ||||||||||||||| | |||||||||||||||||||||| |||||||||||||| ||| Sbjct 157 CATACAAATACATCA-CA-ACTACATAAATATATACAAGAGGGAAGAAAAATGTCGTCCG 214 Query 241 AATGTCCTAGGAAGAACTCGTGGCCGGAGCTTACGGGAACAAATGGTGACTATGCGGCCG 300 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| | Sbjct 215 AATGTCCTAGGAAGAACTCGTGGCCGGAACTTAGGGGAACAAATGGTGACTATGCGGCGG 274 Query 301 TGGTGATAGAGAGAGAGAACCCCACCGTCAATGCTGCCGTGATTTTGGATGGGAGTCCGG 360 ||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||| Sbjct 275 CGGTGATAGAGAGAGAGAACCCAACCGTCGATGCTGTCGTGATTTTGGATGGGAGTCCGG 334 Query 361 TGACCGCAGACTTCAGGTGCGACCGGGTCAGAGTTTTTGTTGATGGAAACCGTATCGTCG 420 ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 335 TGACCGCAGACTTCAGGTGCGACCGGGTCAGGGTTTTTGTTGATAGAAACCGTATCGTCG 394 Query 421 TCAAAACCCCCAAATCCGGCTAGACTTGTATAATTTCTATATTCAT-AA-TGAA-AAAGC 477 |||||||||| | ||||||||||||||||||||||||||||| ||| || | || ||||| Sbjct 395 TCAAAACCCCTACATCCGGCTAGACTTGTATAATTTCTATATGCATTAAAT-AAGAAAGC 453 Query 478 TATAGACGA-GTCGTGGTTGGTTAGTAATCAATCATGTAAAATAATAATC 526 ||||||||| | ||||||||||||||||||| |||||||||||||| ||| Sbjct 454 TATAGACGATG-CGTGGTTGGTTAGTAATCAGTCATGTAAAATAATTATC 502 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22225660611 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5