BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38940.1
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482913 jgi|Araly1|482913|fgenesh2_kg.4__1973__AT2G38940.1 2540 0.0
Ahg485875 jgi|Araly1|485875|fgenesh2_kg.5__1867__AT3G54700.1 1315 0.0
> Ahg482913 jgi|Araly1|482913|fgenesh2_kg.4__1973__AT2G38940.1
Length=1808
Score = 2540 bits (1375), Expect = 0.0
Identities = 1595/1702 (94%), Gaps = 11/1702 (1%)
Strand=Plus/Plus
Query 94 CTCTCT-CTTTCTACACTCTTCTGACAATAC-TAAAACACTTTATCAGATCAGATCCCAC 151
|||||| |||||||||||||| ||||||||| |||||||||| |||||||| |||| ||
Sbjct 41 CTCTCTCCTTTCTACACTCTTTTGACAATACTTAAAACACTTGCTCAGATCAAATCCTAC 100
Query 152 ATAAACT-TTCTA-G-G-AGAAGAAGA-ATGGC-AAGGGAACAATTACAAGTGTTGAATG 205
| ||||| |||| | | ||||||||| ||||| || ||| |||||||||||||||||||
Sbjct 101 ACAAACTCCTCTAGGAGAAGAAGAAGAGATGGCTAA-GGATCAATTACAAGTGTTGAATG 159
Query 206 CACTTGACGTGGCCAAGACGCAATGGTACCATTTCACGGCGATCATAATCGCCGGAATGG 265
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 160 CACTTGACGTGGCCAAGACGCAATGGTACCATTTCACGGCGATCATTATCGCCGGAATGG 219
Query 266 GATTCTTCACTGATGCTTACGATCTCTTTTGCATCTCTCTCGTAACGAAGCTCCTCGGTC 325
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 220 GATTCTTCACTGACGCTTACGATCTCTTTTGCATCTCTCTCGTTACGAAGCTCCTCGGCC 279
Query 326 GTATTTATTACCACGTGGAAGGCGCACAAAAGCCTGGGACTCTCCCTCCCAACGTCGCAG 385
||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct 280 GTATTTATTACCACGTGGACGGCGCAGAAAAGCCTGGGACTCTCCCTCCCAATGTCGCAG 339
Query 386 CCGCCGTCAATGGCGTTGCCTTCTGTGGGACTCTCGCCGGTCAGCTCTTTTTCGGGTGGC 445
| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 340 CTGCCGTCAATGGCGTTGCTTTCTGTGGGACCCTCGCCGGTCAGCTCTTTTTTGGGTGGC 399
Query 446 TTGGTGATAAGCTCGGGAGGAAGAAAGTTTACGGTATGACGTTGATGGTCATGGTCCTTT 505
||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 400 TTGGTGACAAGCTCGGGAGGAAGAAGGTTTATGGTATGACGTTGATGGTCATGGTCCTTT 459
Query 506 GTTCAATAGCCTCTGGTCTCTCTTTCGGACATGAGCCAAAAGCTGTGATGGCCACGCTCT 565
||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 460 GTTCAGTAGCCTCTGGTCTCTCTTTCGGACACGAGCCAAAAGCTGTAATGGCCACGCTCT 519
Query 566 GtttttttCGGTTTTGGCTTGGATTTGGCATCGGTGGTGACTACCCTTTATCCGCAACCA 625
|||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |
Sbjct 520 GTTTTTTTCGGTTTTGGCTTGGATTTGGCATCGGCGGGGACTACCCTTTATCTGCAACGA 579
Query 626 TCATGTCTGAATATGCGAACAAGAAGACTCGCGGAGCCTTTGTCTCTGCGGTTTTTGCTA 685
|||||||||||||||| |||||||| |||||||| |||||||||||||||||||| || |
Sbjct 580 TCATGTCTGAATATGCCAACAAGAAAACTCGCGGCGCCTTTGTCTCTGCGGTTTTCGCGA 639
Query 686 TGCAAGGGTTCGGAATCATGGCTGGTGGTATTTTCGCTATTATAATTTCCTCTGCTTTTG 745
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TGCAAGGGTTTGGAATCATGGCTGGTGGTATTTTCGCTATTATAATTTCCTCTGCTTTTG 699
Query 746 AAGCTAAGTTTCCATCCCCGGCCTATGCGGATGATGCCTTGGGATCCACGATTCCTCAAG 805
|||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 700 AAGCTAAGTTCCCAGCCCCGGCCTATGCGGATGATGCCTTGGGATCCACGGTTCCTCAAG 759
Query 806 CTGATTTGGTATGGCGGATAATCCTGATGGCTGGTGCTATCCCTGCGGCTATGACGTATT 865
|||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||
Sbjct 760 CTGATTTGGTATGGCGGATAATCCTGATGGTTGGTGCTATCCCAGCGGCAATGACATATT 819
Query 866 ACTCAAGGTCGAAGATGCCTGAGACCGCAAGGTACACGGCTTTGGTTGCTAAGGACGCAA 925
|||| || || |||||||| ||||||||||| ||||| |||||||||||||| || ||||
Sbjct 820 ACTCGAGATCAAAGATGCCAGAGACCGCAAGATACACAGCTTTGGTTGCTAAAGATGCAA 879
Query 926 AGCAGGCAGCTTCGGACATGTCTAAGGTTCTGCAAGTGGAGATAGAGCCAGAACAACAGA 985
|||| || ||||| ||||||||||||||| ||||| |||||||||||||||||||||| |
Sbjct 880 AGCAAGCGGCTTCAGACATGTCTAAGGTTTTGCAAATGGAGATAGAGCCAGAACAACAAA 939
Query 986 AATTGGAAGAGATCTCAAAGGAGAAGTCCAAGGCCTTTGGATTGTTCTCAAAGGAATTCA 1045
|| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 940 AAGTGGATGAGATCTCAAAGGAGAAGTCCAAGGCCTTTTCCTTGTTCTCAAAGGAATTCA 999
Query 1046 TGAGTCGCCATGGGCTTCATTTGCTAGGCACTACATCGACATGGTTCCTTCTCGACATTG 1105
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1000 TGAGTCGCCATGGGCTTCATTTGCTAGGCACTACATCGACATGGTTCCTTCTCGACATCG 1059
Query 1106 CTTTCTACAGTCAAAACCTTTTCCA-AAAGGATATTTTCAGCGCGATCGGATGGATTCCT 1164
|||||||||||||||||||||| || |||| ||||||||||||| ||||| |||||||||
Sbjct 1060 CTTTCTACAGTCAAAACCTTTTTCAGAAAG-ATATTTTCAGCGCAATCGGGTGGATTCCT 1118
Query 1165 CCCGCGCAAAGCATGAACGCAATTCAAGAGGTTTTCAAGATTGCCCGTGCGCAAACGCTA 1224
||||| |||||||||||||||||||||||||||||||||| || || || || |||||
Sbjct 1119 CCCGCAAAAAGCATGAACGCAATTCAAGAGGTTTTCAAGATCGCACGAGCACAGACGCTC 1178
Query 1225 ATCGCCTTGTGTAGCACGGTACCTGGTTACTGGTTCACAGTTGCGTTCATCGACGTCATT 1284
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1179 ATCGCCTTGTGTAGCACGGTACCTGGTTACTGGTTCACAGTTGCGTTCATTGACGTCATT 1238
Query 1285 GGAAGATTTGCGATTCAGATGATGGGTTTCTTTTTCATGACGGTCTTTATGTTTGCTCTG 1344
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1239 GGAAGATTCGCGATTCAAATGATGGGCTTCTTTTTCATGACGGTCTTTATGTTTGCTCTC 1298
Query 1345 GCTATTCCTTACAACCACTGGACTCACAAGGAGAACCGAATCGGATTTGTTATCATGTAC 1404
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1299 GCTATTCCTTACAACCACTGGACTCACAAAGAGAACCGAATCGGATTTGTTATCATGTAC 1358
Query 1405 TCGTTAACATTCTTTTTCGCCAACTTTGGACCCAATGCTACAACCTTCGTTGTGCCGGCC 1464
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1359 TCGTTAACATTCTTTTTCGCCAACTTCGGACCCAATGCTACAACCTTCGTTGTGCCGGCC 1418
Query 1465 GAAATCTTCCCAGCCAGGTTCAGATCAACCTGCCACGGTATCTCTGCAGCATCAGGAAAA 1524
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1419 GAGATCTTCCCAGCCAGGTTCAGATCAACCTGCCACGGTATCTCTGCAGCATCAGGCAAA 1478
Query 1525 TTAGGAGCAATGGTTGGTGCGTTCGGGTTCTTGTACTTGGCTCAGAACCCAGACAAGGAC 1584
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||
Sbjct 1479 TTAGGAGCAATGGTTGGTGCGTTCGGATTCTTGTACTTGGCTCAGAGCCCAGACAAGAAC 1538
Query 1585 AAGACCGACGCAGGATACCCTCCAGGGATTGGGGTCAGGAACTCGCTTATTGTGTTGGGT 1644
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1539 AAGACGGACGCAGGATACCCTCCAGGGATTGGAGTCAGGAACTCGCTTATTGTGTTGGGT 1598
Query 1645 GTAGTTAACTTCTTAGGTATCCTCTTCACTTTCTTGGTACCTGAATCTAAAGGTAAGTCA 1704
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 1599 GTGGTTAACTTCTTAGGTATTCTCTTCACTTTCTTGGTGCCTGAATCTAAAGGGAAGTCG 1658
Query 1705 CTCGAGGAAATGTCCGGTGAAAATGAAGACAATGAGAATAGCAACAATGATAGTAGAACG 1764
|| |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 1659 CTAGAGGAAATGTCCGGTGAAAATGAAGACAATGAGAATAGCATCAGTGATAATAGAACG 1718
Query 1765 GTCCCAATAGTTTAGGTGATAT 1786
||||||||||||||||||||||
Sbjct 1719 GTCCCAATAGTTTAGGTGATAT 1740
> Ahg485875 jgi|Araly1|485875|fgenesh2_kg.5__1867__AT3G54700.1
Length=1608
Score = 1315 bits (712), Expect = 0.0
Identities = 1309/1594 (82%), Gaps = 54/1594 (3%)
Strand=Plus/Plus
Query 175 ATGGCAAGG-GAACAATTACAA-GTGTTGAATGCACTTGACGTGGCCAAGACGCAATGGT 232
||||| ||| || ||| || || ||| | || ||||| ||||| ||||| || || ||||
Sbjct 1 ATGGC-AGGAGATCAACTA-AACGTGCTAAACGCACTCGACGTCGCCAAAACACAGTGGT 58
Query 233 ACCATTTCACGGCGATCATAATCGCCGGAATGGGATTCTTCACTGATGCTTACGATCTCT 292
|||||||||| ||||| || ||||||||||||||||||||||| || |||||||| || |
Sbjct 59 ACCATTTCACTGCGATTATCATCGCCGGAATGGGATTCTTCACCGACGCTTACGACCTTT 118
Query 293 TTTGCATCTCTCTCGTAACGAAGCTCCTCGGTCGTATTTATTACCACGTGGAAGGCGCAC 352
|||| ||||| ||||| || ||||| || || || ||||| ||||||||||| || ||
Sbjct 119 TTTGTATCTCCCTCGTCACTAAGCTTCTTGGCCGCATTTACTACCACGTGGACGGTGCGG 178
Query 353 AAAAGCCTGGGACTCTCCCTCCCAACGTCGCAGCCGCCGTCAATGGCGTTGCCTTCTGTG 412
| ||||| || || || ||||| |||||| | ||||| || |||||||| |||||||| |
Sbjct 179 AGAAGCCAGGAACGCTGCCTCCAAACGTCTCGGCCGCTGTTAATGGCGTCGCCTTCTGCG 238
Query 413 GGACTCTCGCCGGTCAGCTCTT-TTTCGGGTGGCTTGGTGATAAGCTCGGGAGGAAGAAA 471
| || |||||||| |||||||| ||| || ||||| || || ||||| |||||||| |||
Sbjct 239 GTACACTCGCCGGCCAGCTCTTCTTT-GGCTGGCTCGGCGACAAGCTTGGGAGGAAAAAA 297
Query 472 GTTTACGGTATGACGTTGATGGTCATGGTCCTTTGTTCAATAGCCTCTGGTCTCT-CTTT 530
|||||||||||||| | |||||||||||||||||||| || ||||| ||||| | ||||
Sbjct 298 GTTTACGGTATGACCCTCATGGTCATGGTCCTTTGTTCCATCGCCTCGGGTCTATCCTTT 357
Query 531 CGGACATGAGCC-AAAAGCTGTGATGGCCACGCTCTGtttttttCGGTTTTGGCTTGGAT 589
||| ||| || |||| | |||||| | ||||||||||| || ||||| |||||||| |
Sbjct 358 GGGA-GTGACCCGAAAA-CGGTGATGACTACGCTCTGTTTCTTCCGGTTCTGGCTTGGTT 415
Query 590 TTGGCATCGGTGGTGACTACCCTTTATCCGCAACCATCATGTCTGAATATGCGAACAAGA 649
||||||| || ||||| || || ||||| || || || ||||||||||| || || || |
Sbjct 416 TTGGCATAGGAGGTGATTATCCGTTATCTGCCACGATTATGTCTGAATACGCCAATAAAA 475
Query 650 AGACTCGCGGAGCCTTTGTCTCTGCGGTTTTTGCTATGCAAGGGTTCGGAATCATGGCTG 709
|||| ||||| || ||| | | ||||||||||||||||||||||| |||||| || | |
Sbjct 476 AGACCCGCGGTGCGTTTATAGCAGCGGTTTTTGCTATGCAAGGGTTTGGAATCTTGACGG 535
Query 710 GTGGTATTTTCGCTATTATAATTTCCT-CTGCTTTTGAAGCTAAGTTTCCATCCCCGGCC 768
| |||||||| || || || | || | ||||| || ||||||||||| | || |
Sbjct 536 GGGGTATTTTTGCCATCAT-CGTGGCTGCCGCTTTCGAGGCTAAGTTTCCGGCTCCTATC 594
Query 769 TATGCGGATGATGCCTTGGGATCCACGA-TTCCTCAAGCTGATTTGGTATGGCGGATAAT 827
||| | ||||||||||| |||||| | |||| ||||| |||| || |||||||| ||
Sbjct 595 TATAAAGTTGATGCCTTGGCATCCAC-AGTTCCCCAAGCGGATTACGTGTGGCGGATCAT 653
Query 828 CCTGATGGCT-GGTGCTATCCCTGCGGCTATGACGTATTACTCAAGGTCGAAGATGCCTG 886
|| |||| | |||||| | ||||| || |||||||||||||| ||||||||||||||||
Sbjct 654 TCTCATGG-TGGGTGCTTTGCCTGCCGCAATGACGTATTACTCGAGGTCGAAGATGCCTG 712
Query 887 AGACCGCAAGGTACACGGCT-TTGGTTGCTAAGGACGC-AAAGC-AGGCAGCTTCGGACA 943
||||||| ||||||||||| || || || ||||| || ||| | | || ||||| |||
Sbjct 713 AGACCGCCCGGTACACGGCTCTT-GTGGCCAAGGATGCGAAA-CTA-GCGGCTTCAAACA 769
Query 944 TGTCTAAGGTTCTGCAAGTGGAGATAG-AGCCAGAACAACAGAAATTGGAAGAGATCTCA 1002
||||||||||| ||||||||||||| | || |||| || ||| | | | || |
Sbjct 770 TGTCTAAGGTTTTGCAAGTGGAGATCGAAG-CAGAGCAGCAG--A---G-A-AG---T-G 817
Query 1003 AAGGAGAAGTCCAAGGCCTTTGGATTGTTCTCAAAGGAATTCATGAGTCGCCATGGGCTT 1062
|| || |||||||| ||||||| ||||| || ||||||||||||| || ||||| |||
Sbjct 818 AA-GATAAGTCCAATTCCTTTGGCTTGTTTTCCAAGGAATTCATGAAACGTCATGGCCTT 876
Query 1063 CATTTGCTAGGCACTAC-ATCGACATGGTTCCTTCTCGACATTGCTTTCTACAGTCAAAA 1121
|||||||| || || || | | ||||||||||| |||||||| || |||||||| || ||
Sbjct 877 CATTTGCTCGGAACCACAAGC-ACATGGTTCCTACTCGACATCGCCTTCTACAGCCAGAA 935
Query 1122 CCTTTTCCA-AAAGGATATTTTCAGCGCGATCGGATGGATTCCTCCCGCGCAAAGCATGA 1180
||||||||| ||| |||||||||||||||||||||||||||||||| || || | |||||
Sbjct 936 CCTTTTCCAGAAA-GATATTTTCAGCGCGATCGGATGGATTCCTCCGGCTCAGACCATGA 994
Query 1181 ACGCAATTCAAGAGGTTTTCAAGATTGCCCGTGCGCAAACGCTAATCGCCTTGTGTAGCA 1240
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 995 ACGCGATTCAAGAGGTTTTCAAGATTGCACGTGCGCAAACCCTAATCGCCTTGTGCAGCA 1054
Query 1241 CGGTACCTGGTTACTGGTTCACAGTTGCGTTCATCGACGTCATTGGAAGATTTGCGATTC 1300
||||||| ||||||||||||||||| || |||||||||||||| || ||||||||||| |
Sbjct 1055 CGGTACCCGGTTACTGGTTCACAGTGGCCTTCATCGACGTCATAGGTAGATTTGCGATAC 1114
Query 1301 AGATGATGGGTTTCTTTTTCATGACGGTCTTTATGTTTGCTCTGGCTATTCCTTACAACC 1360
|||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||| |||
Sbjct 1115 AGATGATGGGTTTCTTCTTCATGACCGTCTTTATGTTCGCTCTCGCCATTCCTTACGACC 1174
Query 1361 ACTGGACTCACAAGGAGAACCGAATCGGATTTGTTA-TCATGTACTCGT-TAACATTCTT 1418
| |||||||||||||||||| |||||||||| || | |||||||| | ||||||||||
Sbjct 1175 ATTGGACTCACAAGGAGAACAGAATCGGATTCGTGGCT-ATGTACTC-TCTAACATTCTT 1232
Query 1419 TTTCGCCAACTTTGGACCCAATGCTACAACCTTCGTTGTGCCGGCCGAAATCTTCCCAGC 1478
|||||||||||||||||||||||||| ||||||||||||||||| || || ||||| ||
Sbjct 1233 CTTCGCCAACTTTGGACCCAATGCTACTACCTTCGTTGTGCCGGCTGAGATTTTCCCGGC 1292
Query 1479 CAGGTTCAGATCAACCTGCCACGGTATCTCTGCAGCATCAGGAAAATTAGGAGCAATGGT 1538
||||| ||||||||||| || || || || || || || ||||| || |||||||||||
Sbjct 1293 TAGGTTTAGATCAACCTGTCATGGAATTTCCGCGGCTTCTGGAAAGTTGGGAGCAATGGT 1352
Query 1539 TGGTGCGTTCGGGTTCTTGTACTTGGCTCAGAAC-CCAGACAAGGAC-AAGACCGACGCA 1596
||||||||| |||||||||||||| || || || || |||||| || ||||| || |||
Sbjct 1353 TGGTGCGTTTGGGTTCTTGTACTTAGCACA-AAGTCCTGACAAG-ACCAAGACAGA-GCA 1409
Query 1597 -GGATACCCTCCAGGGATTGGGGTCAGGAACTCGCTTATTGTGTTGGGTGTAGTTAA-CT 1654
||||| |||||||| ||||| |||| ||||||||| ||||| |||||||| ||||| ||
Sbjct 1410 TGGATATCCTCCAGGCATTGGAGTCAAGAACTCGCTCATTGTTTTGGGTGTGGTTAATCT 1469
Query 1655 TCTTAGGTATCCTCTTCACTTTCTTGGTACCTGAATCTAAAGGTAAGTCACTCGAGGAAA 1714
| || || || | || || | ||||| |||||||||||||| ||||| ||||||||||
Sbjct 1470 T-TTGGGGATGGTTTTTACACTGTTGGTTCCTGAATCTAAAGGCAAGTCTCTCGAGGAAA 1528
Query 1715 TGTCCGGTGAAAATGAAGACAATGA-GAATAGCA 1747
|||||||||| || ||| | ||||| ||| ||||
Sbjct 1529 TGTCCGGTGAGAACGAACAAAATGATGAA-AGCA 1561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71381119130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5