BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39010.1 Length=1245 Score E Sequences producing significant alignments: (Bits) Value Ahg482920 jgi|Araly1|482920|fgenesh2_kg.4__1980__AT2G39010.1 1906 0.0 Ahg887461 jgi|Araly1|887461|Al_scaffold_0092_1 449 2e-125 > Ahg482920 jgi|Araly1|482920|fgenesh2_kg.4__1980__AT2G39010.1 Length=1228 Score = 1906 bits (1032), Expect = 0.0 Identities = 1158/1217 (95%), Gaps = 15/1217 (1%) Strand=Plus/Plus Query 39 tctctctc-tctctttctTTTTTGAGTCCGTGAAGGCTAAGTCTGAAAGAATGACGAAGG 97 |||||||| ||||| || | | | |||||||| ||||||| |||||| ||||||||| | Sbjct 17 TCTCTCTCTTCTCTCTC-TCTCTCAGTCCGTG-AGGCTAAACCTGAAACAATGACGAAAG 74 Query 98 ATGAGTTGACGGAGGAAGAGTCGCTCTCCGGCAAGGACTACTTAGACCCACCGCCTGTGA 157 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 75 ATGAGTTGACGGAGGAAGAGTCGCTCTCCGGCAAGGACTACTTAGACCCACCGCCTGTGA 134 Query 158 AGACGTTCGAGGTGAGAGAGCTCAAGAAGTGGTCCTTCTACAGAGCTGTCATCGCTGAGT 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 AGACGTTCGAGGTGAGAGAGCTCAAGAAGTGGTCCTTCTACAGAGCTGTCATCGCTGAGT 194 Query 218 TCATAGCTACTTTGCTCTTTCTATACGTGACTGTTTTGACAGTCATCGGCTTTAAGAGCC 277 ||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||| Sbjct 195 TCATAGCTACTTTCCTCTTTCTATATGTCACCGTTTTGACAGTCATCGGCTTTAAGAGCC 254 Query 278 AGACTGATATCAACGCCGGCGGCGGAGCTTGTGCCAGTGTCGGCCTCCTAGGCATCTCTT 337 |||| |||| |||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 255 AGACGGATACCAACGCTGGTGGTGGAGCTTGTGCCAGTGTCGGCCTCCTAGGCATCTCTT 314 Query 338 GGGCCTTTGGTGGCATGATATTCATCCTCGTCTACTGCACTGCCGGCATCTCTGGTGGAC 397 ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 315 GGGCCTTCGGTGGCATGATCTTCATCCTCGTCTATTGCACTGCCGGCATCTCTGGTGGAC 374 Query 398 ACATCAATCCCGCGGTGACGTTTGGGCTATTCCTAGCTAGCAAGGTATCATTGGTTAGAG 457 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 375 ACATTAATCCCGCGGTGACGTTTGGGCTATTCCTAGCTAGCAAGGTATCATTGGTGAGAG 434 Query 458 CTGTGTCGTACATGGTGGCTCAGTGTCTCGGAGCCACTTGTGGAGTTGGTTTGGTGAAAG 517 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 435 CTGTGTCGTACATGGTGGCTCAGTGTCTCGGAGCCACTTGCGGAGTTGGTTTGGTGAAAG 494 Query 518 TCTTCCAGTCGACTTATTACAACCGCTACGGTGGTGGAGCCAACATGCTCTCCGACGGAT 577 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 495 TCTTCCAGTCGACTTATTACAACCGCTACGGTGGTGGAGCCAACATGCTCTCCGAAGGAT 554 Query 578 ACAATGTTGGCGTTGGGGTTGGTGCTGAGATTATCGGCACTTTTGTCCTCGTCTACACCG 637 |||||||||| || || |||||||| |||||||||||||||||||||||||||||||||| Sbjct 555 ACAATGTTGGTGTAGGTGTTGGTGCGGAGATTATCGGCACTTTTGTCCTCGTCTACACCG 614 Query 638 TCTTCTCCGCTACCGACCCTAAGCGAAATGCCCGTGACTCTCACATTCCTGTATTAGCAC 697 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 615 TCTTCTCCGCTACCGACCCTAAGCGAAATGCCCGTGACTCTCACATTCCTGTATTGGCAC 674 Query 698 CATTGCCAATTGGATTTTCCGTGTTCATGGTTCATTTAGCCACAATTCCAATTACTGGCA 757 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 675 CATTGCCAATTGGATTTTCCGTGTTCATGGTTCATTTAGCCACAATTCCAATTACTGGCA 734 Query 758 CCGGAATAAACCCGGCTAGGAGTTTTGGAGCTGCCGTCATCTACAACAATCAAAAGGCTT 817 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 735 CCGGAATTAATCCGGCTAGGAGTTTTGGAGCTGCCGTCATCTACAACAATCAAAAGGCTT 794 Query 818 GGGATGATCAGTGGATCTTCTGGGTCGGTCCATTTGTGGGTGCAGCCATTGCAGCATTTT 877 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 795 GGGATGATCAGTGGATCTTCTGGGTCGGTCCATTTGTGGGTGCAGCCATTGCAGCATTTT 854 Query 878 ACCATCAGTTTGTGTTGAGAGCTGGTGCAATGAAGGCCTATGGGTCAGTCAGGAGCCAGC 937 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 855 ACCATCAGTTTGTGTTGAGAGCTGGCGCTATGAAGGCCTATGGGTCAGTCAGGAGCCAGC 914 Query 938 TTCATGAGCTCCATGCTTAAATTTG-TTATTTCGAACTAGCGAAGAGGTGAAGAATTCTT 996 |||||||||| |||||||||||||| || |||||||||| |||||||||||||||||||| Sbjct 915 TTCATGAGCTTCATGCTTAAATTTGATT-TTTCGAACTATCGAAGAGGTGAAGAATTCTT 973 Query 997 TGGGCCAGGAAGGGAGGAAGGaaaaaaaaaaGGGACCCAAATCATATAAAAGAAAAAACG 1056 ||||||| || ||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 974 TGGGCCAAGATGGGAGAAAGGAAAAAAAA--GGGACCCAAATCATATAAAAGAAAAAACG 1031 Query 1057 AATATTATTTAAGATGGTCGGTGAGTGACATTTACTGTGTCTTATTTGTGGCTTTGTGGG 1116 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1032 AATATTATTAAAGATGGTCGGTGAGTGACATTTACTGTGTCTTATTTGTGGCTTTGTGGG 1091 Query 1117 GGAGGTTTGTGTGTAACAATTTGTAACGTACAAGC-----A--A-TGTATGTGTTATTTG 1168 ||||||||| ||||||||||||||||||||||||| | | ||||||||||||||| Sbjct 1092 GGAGGTTTGAGTGTAACAATTTGTAACGTACAAGCCTCGTATGAATGTATGTGTTATTTG 1151 Query 1169 ATGCATATGATATTTATATATCTACTTATTGATGATTCTATCTTTGATCAATCATCATTA 1228 ||||||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||| Sbjct 1152 ATGCATATGATATTTTTATACCTACTTATTGATGATTCTATCTTTAATCAATAATCATTA 1211 Query 1229 TAACTTAAATTTCATAG 1245 ||||||||||||||||| Sbjct 1212 TAACTTAAATTTCATAG 1228 > Ahg887461 jgi|Araly1|887461|Al_scaffold_0092_1 Length=270 Score = 449 bits (243), Expect = 2e-125 Identities = 261/270 (97%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 688 GTATTAGCACCATTGCCAATTGGATTTTCCGTGTTCATGGTTCATTTAGCCACAATTCCA 747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTATTAGCACCATTGCCAATTGGATTTTCCGTGTTCATGGTTCATTTAGCCACAATTCCA 60 Query 748 ATTACTGGCACCGGAATAAACCCGGCTAGGAGTTTTGGAGCTGCCGTCATCTACAACAAT 807 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATTACTGGCACCGGAATTAATCCGGCTAGGAGTTTTGGAGCTGCCGTCATCTACAACAAT 120 Query 808 CAAAAGGCTTGGGATGATCAGTGGATCTTCTGGGTCGGTCCATTTGTGGGTGCAGCCATT 867 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CAAAAGGCTTGGGATGATCAGTGGATCTTCTGGGTCGGTCCATTTGTGGGTGCAGCCATT 180 Query 868 GCAGCATTTTACCATCAGTTTGTGTTGAGAGCTGGTGCAATGAAGGCCTATGGGTCAGTC 927 ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 181 GCAGCATTTTACCATCAGTTTGTGTTGAGAGCTGGCGCTATGAAGGCCTATGGGTCAGTG 240 Query 928 AGGAGCCAGCTTCATGAGCTCCATGCTTAA 957 || ||||| ||||| ||||| ||||||||| Sbjct 241 AGAAGCCAACTTCACGAGCTTCATGCTTAA 270 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46509958740 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5