BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39030.1
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482922 jgi|Araly1|482922|fgenesh2_kg.4__1982__AT2G39030.1 1149 0.0
Ahg952594 jgi|Araly1|952594|scaffold_9200004.1 686 0.0
> Ahg482922 jgi|Araly1|482922|fgenesh2_kg.4__1982__AT2G39030.1
Length=799
Score = 1149 bits (622), Expect = 0.0
Identities = 690/722 (96%), Gaps = 7/722 (1%)
Strand=Plus/Plus
Query 1 ACATCACTA-TCTTCAAAAACAAGTAACAGAAAAATGGCGCCTCCAACCGCAGCACCAGA 59
||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ACATCAC-AGTCTTCAAAGACAAGTAACAAAAAAATGGCGCCTCCAACCGCAGCACCAGA 59
Query 60 GCCAAACACTGTGCCAGAGACTTCACCGACCGGCCACCGTATGTTTTCCCGGATCCGCCT 119
||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 60 GCCAAACACCGTGCCAGAGACTTCACCGACTGGCCACCCTATGTTTTCCCGGATCCGCCT 119
Query 120 CGCTACGCCGACCGATGTCCCTTTCATTCACAAGCTAATCCACCAGATGGCGGTTTTTGA 179
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGCGACGCCGACTGATGTCCCTTTCATTCACAAGCTAATCCACCAGATGGCGGTTTTTGA 179
Query 180 GCGCCTCACGCATCTCTTTGTCGCCACCGAGTCTGGTCTTGCCTCCACGCTCTTCAACTC 239
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 GCGCCTCACGCATCTATTTGTCGCCACCGAGTCTGGTCTTGCCTCCACTCTCTTCAACTC 239
Query 240 CCGTCCGTTCCAAGCCGTCACCGTCTTCCTCTTGGAAATCTCCCCTTCCCCATTTCCCAC 299
|||||| |||||||||||||||||||| |||||||| ||||||||||| |||||| ||||
Sbjct 240 CCGTCCATTCCAAGCCGTCACCGTCTTTCTCTTGGAGATCTCCCCTTCTCCATTTTCCAC 299
Query 300 CACTCATGACGCTTCGTCCCCTGATTTCACCCCCTTTCTTGAGACGCATAAGGTTGATCT 359
|| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 CA---ATGACGTTTCGTCCCCTGAATTCACCCCCTTTCTTGAGACGCATAAGGTTGATCT 356
Query 360 CCCTATCGAGGATCCGGACAGAGAAAAGTTCTTGCCGGATAAGCTCAACGACGTGGTGGT 419
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 357 CCCTATCGAGGATCCGGACAAAGACAAGTTCTTGCCGGATAAGCTCAACGACGTGGTGGT 416
Query 420 GGCTGGATTCGTTCTGTTCTTCCCGAACTACCCAAGTTTTCTAGCGAAACAGGGTTTCTA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGCTGGATTCGTTCTGTTCTTCCCGAACTACCCAAGTTTTCTAGCGAAACAGGGTTTCTA 476
Query 480 CATCGAGGATATCTTCATGAGAGAACCTTACAG-ACGAAAAGGCTTCGGAAAACTGCTAC 538
|||||||||||||||| ||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 477 CATCGAGGATATCTTCGTGAGAGAGCCTTACAGGA-GAAAAGGCTTCGGAAAACTGCTAC 535
Query 539 TGACCGCTGTGGCAAAGCAAGCAGTGAAGTTGGGTGTCGGAAGAGTGGAGTGGATTGTGA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TGACCGCTGTGGCAAAGCAAGCAGTGAAGTTGGGTGTCGGAAGAGTGGAGTGGATTGTGA 595
Query 599 TCGATTGGAATGTGAATGCTATCAACTTCTATGAGCAGATGGGTGCGCAGGTTTTTAAGG 658
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TTGATTGGAACGTGAATGCTATCAACTTCTATGAGCAGATGGGTGCGCAGGTTTTTAAGG 655
Query 659 AATGGAGACTTTGTAGGCTCACTGGCGATGCACTTCAAGCTATTGACAAGCTAAACATCT 718
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 656 AATGGAGACTTTGTAGGCTCACTGGCGATGCACTTCAAGCTATCGACAAGCTAAGCATCT 715
Query 719 AG 720
||
Sbjct 716 AG 717
> Ahg952594 jgi|Araly1|952594|scaffold_9200004.1
Length=479
Score = 686 bits (371), Expect = 0.0
Identities = 417/439 (95%), Gaps = 3/439 (1%)
Strand=Plus/Plus
Query 10 TCTTCAAAAACAAGTAACAGAAAAATGGCGCCTCCAACCGCAGCACCAGAGCCAAACACT 69
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTCAAAGACAAGTAACAAAAAAATGGCGCCTCCAACCGCAGCACCAGAGCCAAACACC 60
Query 70 GTGCCAGAGACTTCACCGACCGGCCACCGTATGTTTTCCCGGATCCGCCTCGCTACGCCG 129
|||||||||||||||||||| ||||||| ||||||||||||||||||||| || ||||||
Sbjct 61 GTGCCAGAGACTTCACCGACTGGCCACCCTATGTTTTCCCGGATCCGCCTGGCGACGCCG 120
Query 130 ACCGATGTCCCTTTCATTCACAAGCTAATCCACCAGATGGCGGTTTTTGAGCGCCTCACG 189
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTGATGTCCCTTTCATTCACAAGCTAATCCACCAGATGGCGGTTTTTGAGCGCCTCACG 180
Query 190 CATCTCTTTGTCGCCACCGAGTCTGGTCTTGCCTCCACGCTCTTCAACTCCCGTCCGTTC 249
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 181 CATCTATTTGTCGCCACCGAGTCTGGTCTTGCCTCCACTCTCTTCAACTCCCGTCCATTC 240
Query 250 CAAGCCGTCACCGTCTTCCTCTTGGAAATCTCCCCTTCCCCATTTCCCACCACTCATGAC 309
||||||||||||||||| |||||||| ||||||||||| |||||| |||||| |||||
Sbjct 241 CAAGCCGTCACCGTCTTTCTCTTGGAGATCTCCCCTTCTCCATTTTCCACCA---ATGAC 297
Query 310 GCTTCGTCCCCTGATTTCACCCCCTTTCTTGAGACGCATAAGGTTGATCTCCCTATCGAG 369
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GTTTCGTCCCCTGAATTCACCCCCTTTCTTGAGACGCATAAGGTTGATCTCCCTATCGAG 357
Query 370 GATCCGGACAGAGAAAAGTTCTTGCCGGATAAGCTCAACGACGTGGTGGTGGCTGGATTC 429
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATCCGGACAAAGACAAGTTCTTGCCGGATAAGCTCAACGACGTGGTGGTGGCTGGATTC 417
Query 430 GTTCTGTTCTTCCCGAACT 448
|||||||||||||||||||
Sbjct 418 GTTCTGTTCTTCCCGAACT 436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36254894067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5