BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39110.1 Length=1531 Score E Sequences producing significant alignments: (Bits) Value Ahg952599 jgi|Araly1|952599|scaffold_9200009.1 2069 0.0 Ahg482930 jgi|Araly1|482930|fgenesh2_kg.4__1990__AT2G39110.1 1971 0.0 > Ahg952599 jgi|Araly1|952599|scaffold_9200009.1 Length=1347 Score = 2069 bits (1120), Expect = 0.0 Identities = 1275/1351 (94%), Gaps = 6/1351 (0%) Strand=Plus/Plus Query 85 TCACAGCATTCCATTCATCCTCATGAATAATTCTACATCAGTGAAGAGGCTGGTTTCATC 144 ||||| |||| || |||||||||||||||||||||||||||||| |||||||||||| || Sbjct 1 TCACAACATTTCAGTCATCCTCATGAATAATTCTACATCAGTGAGGAGGCTGGTTTCGTC 60 Query 145 TAAGGCAATGAAATGTTTCTACTTCAGCAAAGACAAAACTCAGGATGATGAAGCTAAGAC 204 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TAAAGCAATGAAATGTTTCTACTTCAGCAAAGACAAAACTCAGGATGATGAAGCTAAGAC 120 Query 205 TAGAAAGTTTGGTT-CAGCTACGATGGCTAGAGGAGGATCAGGGTCTGAGTTTAATTCAG 263 ||||||||||||| || |||||||||||||||||||||||||||||| ||||| || | Sbjct 121 GAGAAAGTTTGGTTCCA-TTACGATGGCTAGAGGAGGATCAGGGTCTGAATTTAACTCTG 179 Query 264 ATACAAGTACTGCTACTTCCATTACTTCTTCCTTGCACGTCCTCTCAGAGACACACAGTA 323 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 180 ATACAAGTACTGCTACTTCCATTACTTCTTCCTTGCACGTTCTCTCAGAGACACACAGTA 239 Query 324 ATAATCTCAAAGTATTTGTCCTCGATGACCTTAAAACCGCTACCAAGAACTTCAGCCGCT 383 | ||||||||||| |||| |||||||||||||||||| |||||||| || |||||||||| Sbjct 240 ACAATCTCAAAGTCTTTGCCCTCGATGACCTTAAAACTGCTACCAAAAATTTCAGCCGCT 299 Query 384 CCTTGATGATCGGTGAAGGTGGCTTTGGTGGTGTCTTTCGTGGCGTGATTCAGAACCCTC 443 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 300 CATTGATGATCGGTGAAGGTGGCTTTGGCGGTGTCTTTCGTGGCGTGATTCAGAACCCTC 359 Query 444 AAGATTCTCGTAAAAAGATTGATATTGCAGTTAAACAACTTAGTAGAAGAGGTCTACAGG 503 ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 360 AAGATTCTCGTAAGAAGATTGAAATTGCAGTTAAACAACTCAGTAGAAGAGGTCTACAGG 419 Query 504 GGCATAAAGAATGGGTGACAGAGGTAAATGTATTGGGAGTAGTGGAGCATCCGAATCTGG 563 | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 420 GTCATAAAGAATGGGTGACAGAGGTAAATGTACTGGGAGTAGTGGAGCATCCGAATCTGG 479 Query 564 TGAAGCTGATCGGTTATTGCGCTGAGGATGATGAGAGAGGGATCCAACGGCTACTTGTTT 623 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 480 TGAAGCTGATCGGTTATTGCGCTGAGGATGATGAGAGAGGGATCCAAAGGCTACTTGTTT 539 Query 624 ACGAATACGTACAAAACAGAAGTGTTCAAGACCATTTATCCAATCGTTTTATAGTCACTC 683 |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 540 ACGAATACGTACCAAACAGAAGTGTTCAAGACCATTTATCCAATCGTTTTATTGTCACTC 599 Query 684 CTCTTCCTTGGTCCACCAGACTGAAGATTGCTCAAGACACTGCTAGAGGACTCGCTTATC 743 |||| ||||||||||||||| | ||||||||||| ||||||||| ||||||| ||||||| Sbjct 600 CTCTCCCTTGGTCCACCAGATTAAAGATTGCTCAGGACACTGCTCGAGGACTTGCTTATC 659 Query 744 TTCATCAAGGCATGGAGTTTCAGATCATCTTTAGGGATTTCAAATCCTCTAATATCCTTC 803 ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 660 TTCATGAAGGCATGGAGTTTCAGATCATCTTTAGGGATTTCAAATCCTCCAATATTCTTC 719 Query 804 TTGATGAGAACTGGAATGCAAAACTCTCGGATTTCGGACTGGCTCGAATGGGTCCTTCAG 863 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 720 TTGATGAGAATTGGAATGCAAAGCTCTCGGATTTCGGACTGGCTCGAATGGGTCCTTCTG 779 Query 864 ATGGAATCACTCACGTTTCCACCGCGGTTGTAGGGACCATTGGTTATGCAGCACCGGAAT 923 ||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 780 ATGGAATCACTCATGTCTCCACTGCGGTTGTAGGGACCATTGGTTATGCAGCACCGGAAT 839 Query 924 ACATCCAAACAGGACACCTCACGGCTAAGAGCGACGTGTGGAGCTACGGAATCTTTTTAT 983 | |||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||| Sbjct 840 ATATCCAAACAGGACACCTCACTGCCAAGAGTGACGTGTGGAGCTACGGAATCTTTCTAT 899 Query 984 ATGAACTCATCACAGGAAGACGACCTTTTGACCGTAACCGCCCAAGAAACGAGCAGAACA 1043 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 900 ATGAACTCATCACAGGAAGACGACCTTTTGACCGTAACCGCCCAAGAAACGAGCAGAATA 959 Query 1044 TCTTGGAGTGGATCAGACCACACTTATCCGACATAAAGAAGTTCAAAATGATCATCGACC 1103 || |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 960 TCCTGGAGTGGATCAGACCACACTTGTCCGACATAAAGAAGTTCAAGATGATCATCGACC 1019 Query 1104 CAAGACTTGAAGGAAACTACTACCTCAAGTCAGCATTAAAGCTAGCTGCAGTTGCTAACC 1163 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1020 CAAGACTTGAAGGAAACTACTACCTCAAATCAGCATTGAAGCTAGCTGCAGTTGCTAACC 1079 Query 1164 GGTGTTTGATGGTAAAAGCGAAAGCAAGGCCAACAATGAGTCAGGTTTCAGAGATGTTAG 1223 ||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||| Sbjct 1080 GGTGTTTGATGGTGAAGGCGAAGGCTAGGCCAACAATGAGTCAGGTTTCAGAGATGTTAG 1139 Query 1224 AAAGGATAGTGGAAACATCATCAGATGGTGCTCCTTCAGGACTGCCATTGATGAAAAGCT 1283 |||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| Sbjct 1140 AAAGGATAGTGGAAACATCA---GATGATGCTCCTTCAGGACTGCCATTGATGAAGAGCT 1196 Query 1284 TGACACCTAAAGATGCATTCGAAGCCTCAAGAAGGGAGAGAGTTAAGAGAAGATTTGTTG 1343 |||||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||| Sbjct 1197 TGACACCTAAAGCTGCATTCGAGGCCTCAAGAAGAGAGAGAGTTAAAAGAAGATTTGTTG 1256 Query 1344 AACTGTTAATTGGAGAAAATGGTTGTCCCAATTTACCTACTTGGTCTCATAAACTTGTTA 1403 |||| || || |||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 1257 AACTTTTGATCGGAGAAAATGGTTGTCCCAATTTACCCACTTGGTCTCCTAAACTTGTTA 1316 Query 1404 CTTCTATTTGAtttttttGAGAGAACAAACT 1434 |||||| |||||||||| ||||||||||||| Sbjct 1317 CTTCTACTTGATTTTTT-GAGAGAACAAACT 1346 > Ahg482930 jgi|Araly1|482930|fgenesh2_kg.4__1990__AT2G39110.1 Length=1387 Score = 1971 bits (1067), Expect = 0.0 Identities = 1310/1422 (92%), Gaps = 37/1422 (3%) Strand=Plus/Plus Query 1 Gtcttctctcttctcctcttatctctttctctaccattttcttttgctttaaagctctct 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 GTCTTCTCTCTTCTCCTCTTATCTCTTTCTCTGCCATTTTCTTTTGCTTTAAAGCTCTCT 60 Query 61 cAATCATGATCATGAAGACCCCCATCACAGCATTCCATTCATCCTCATGAATAATTCTAC 120 ||||||||| |||||||| |||||||||| |||| || |||||||||||||||||||||| Sbjct 61 CAATCATGAACATGAAGATCCCCATCACAACATTTCAGTCATCCTCATGAATAATTCTAC 120 Query 121 ATCAGTGAAGAGGCTGGTTTCATCTAAGGCAATGAAATGTTTCTACTTCAGCAAAGACAA 180 |||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 121 ATCAGTGAGGAGGCTGGTTTCGTCTAAAGCAATGAAATGTTTCTACTTCAGCAAAGACAA 180 Query 181 AACTCAGGATGATGAAGCTAAGACTAGAAAGTTTGGTTC-AGCTACGATGGCTAGAGGAG 239 |||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| Sbjct 181 AACTCAGGATGATGAAGCTAAGACGAGAAAGTTTGGTTCCAT-TACGATGGCTAGAGGAG 239 Query 240 GATCAGGGTCTGAGTTTAATTCAGATACAAGTACTGCTACTTCCATTACTTCTTCCTTGC 299 ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 240 GATCAGGGTCTGAATTTAACTCTGATACAAGTACTGCTACTTCCATTACTTCTTCCTTGC 299 Query 300 ACGTCCTCTCAGAGACACACAGTAATAATCTCAAAGTATTTGTCCTCGATGACCTTAAAA 359 |||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| Sbjct 300 ACGTTCTCTCAGAGACACACAGTAACAATCTCAAAGTCTTTGCCCTCGATGACCTTAAAA 359 Query 360 CCGCTACCAAGAACTTCAGCCGCTCCTTGATGATCGGTGAAGGTGGCTTTGGTGGTGTCT 419 | |||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 360 CTGCTACCAAAAATTTCAGCCGCTCATTGATGATCGGTGAAGGTGGCTTTGGCGGTGTCT 419 Query 420 TTCGTGGCGTGATTCAGAACCCTCAAGATTCTCGTAAAAAGATTGATATTGCAGTTAAAC 479 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | | Sbjct 420 TTCGTGGCGTGATTCAGAACCCTCAAGATTCTCGTAAGAAGATTGAAATTGCAGGT---C 476 Query 480 AACTTAGTAGAA-GAGGTCTACAGGGGCATAAAGAATGGGTGACAGAGGTAAATGTATTG 538 | | | |||| | ||| |||| || |||| || | || | || | ||| | Sbjct 477 A--TAA--AGAATG-GGTG-ACAGAGG--TAAA---TG--T-ACTG-GG-A---GTA--G 515 Query 539 GGAGTAGTGGAGCATCCGAATCTGGTGAAGCTGATCGGTTATTGCGCTGAGGATGATGAG 598 | | | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 516 ----T-G-G-AGCATCCGAATCTGGTGAAGCTGATCGGTTATTGCGCTGAGGATGATGAG 568 Query 599 AGAGGGATCCAACGGCTACTTGTTTACGAATACGTACAAAACAGAAGTGTTCAAGACCAT 658 |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 569 AGAGGGATCCAAAGGCTACTTGTTTACGAATACGTACCAAACAGAAGTGTTCAAGACCAT 628 Query 659 TTATCCAATCGTTTTATAGTCACTCCTCTTCCTTGGTCCACCAGACTGAAGATTGCTCAA 718 ||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||||||| Sbjct 629 TTATCCAATCGTTTTATTGTCACTCCTCTCCCTTGGTCCACCAGATTAAAGATTGCTCAG 688 Query 719 GACACTGCTAGAGGACTCGCTTATCTTCATCAAGGCATGGAGTTTCAGATCATCTTTAGG 778 ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 689 GACACTGCTCGAGGACTTGCTTATCTTCATGAAGGCATGGAGTTTCAGATCATCTTTAGG 748 Query 779 GATTTCAAATCCTCTAATATCCTTCTTGATGAGAACTGGAATGCAAAACTCTCGGATTTC 838 |||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||| Sbjct 749 GATTTCAAATCCTCCAATATTCTTCTTGATGAGAATTGGAATGCAAAGCTCTCGGATTTC 808 Query 839 GGACTGGCTCGAATGGGTCCTTCAGATGGAATCACTCACGTTTCCACCGCGGTTGTAGGG 898 ||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||| Sbjct 809 GGACTGGCTCGAATGGGTCCTTCTGATGGAATCACTCATGTCTCCACTGCGGTTGTAGGG 868 Query 899 ACCATTGGTTATGCAGCACCGGAATACATCCAAACAGGACACCTCACGGCTAAGAGCGAC 958 |||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||| Sbjct 869 ACCATTGGTTATGCAGCACCGGAATATATCCAAACAGGACACCTCACTGCCAAGAGTGAC 928 Query 959 GTGTGGAGCTACGGAATCTTTTTATATGAACTCATCACAGGAAGACGACCTTTTGACCGT 1018 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 929 GTGTGGAGCTACGGAATCTTTCTATATGAACTCATCACAGGAAGACGACCTTTTGACCGT 988 Query 1019 AACCGCCCAAGAAACGAGCAGAACATCTTGGAGTGGATCAGACCACACTTATCCGACATA 1078 ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| Sbjct 989 AACCGCCCAAGAAACGAGCAGAATATCCTGGAGTGGATCAGACCACACTTGTCCGACATA 1048 Query 1079 AAGAAGTTCAAAATGATCATCGACCCAAGACTTGAAGGAAACTACTACCTCAAGTCAGCA 1138 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1049 AAGAAGTTCAAGATGATCATCGACCCAAGACTTGAAGGAAACTACTACCTCAAATCAGCA 1108 Query 1139 TTAAAGCTAGCTGCAGTTGCTAACCGGTGTTTGATGGTAAAAGCGAAAGCAAGGCCAACA 1198 || ||||||||||||||||||||||||||||||||||| || ||||| || ||||||||| Sbjct 1109 TTGAAGCTAGCTGCAGTTGCTAACCGGTGTTTGATGGTGAAGGCGAAGGCTAGGCCAACA 1168 Query 1199 ATGAGTCAGGTTTCAGAGATGTTAGAAAGGATAGTGGAAACATCATCAGATGGTGCTCCT 1258 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 1169 ATGAGTCAGGTTTCAGAGATGTTAGAAAGGATAGTGGAAACATCA---GATGATGCTCCT 1225 Query 1259 TCAGGACTGCCATTGATGAAAAGCTTGACACCTAAAGATGCATTCGAAGCCTCAAGAAGG 1318 |||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| Sbjct 1226 TCAGGACTGCCATTGATGAAGAGCTTGACACCTAAAGCTGCATTCGAGGCCTCAAGAAGA 1285 Query 1319 GAGAGAGTTAAGAGAAGATTTGTTGAACTGTTAATTGGAGAAAATGGTTGTCCCAATTTA 1378 ||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||| Sbjct 1286 GAGAGAGTTAAAAGAAGATTTGTTGAACTTTTGATCGGAGAAAATGGTTGTCCCAATTTA 1345 Query 1379 CCTACTTGGTCTCATAAACTTGTTACTTCTATTTGAtttttt 1420 || |||||||||| ||||||||||||||||| |||||||||| Sbjct 1346 CCCACTTGGTCTCCTAAACTTGTTACTTCTACTTGATTTTTT 1387 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57325818725 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5