BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39190.2
Length=2835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934672 jgi|Araly1|934672|scaffold_402660.1 3594 0.0
Ahg893023 jgi|Araly1|893023|Al_scaffold_0006_1019 124 3e-27
Ahg920939 jgi|Araly1|920939|scaffold_102220.1 89.8 1e-16
> Ahg934672 jgi|Araly1|934672|scaffold_402660.1
Length=2401
Score = 3594 bits (1946), Expect = 0.0
Identities = 2218/2345 (95%), Gaps = 35/2345 (1%)
Strand=Plus/Plus
Query 304 ACACTTCGCTGATGTTGTACGCAATGACGTTGATTTCCTGAAGAACAAAATCGGTATCGG 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 41 ACACTTCGCTGATGTTGTACGCAATGACGTTGATTTCCTGAAGAACAAAATCGGCATCGG 100
Query 364 ACTCCGTTGGGCTAACGAGGCTTTTCGTGTACCGGAAGTGACTAAATCCGCTGAGGAACT 423
|||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 101 ACTCCGGTGGGCGAATGAGGCTTTTCGTGTACCGGAAGTGACTAAATCCGCTGAGGAATT 160
Query 424 GTTTTGGCTTAGGCATCTTGAGGATCATACTTC-TCAGAATTTGAAGTCACAATCTTGGC 482
|||||||||| ||||||||||||||||| |||| || ||||||| |||||||||||||||
Sbjct 161 GTTTTGGCTTCGGCATCTTGAGGATCATGCTTCTTC-GAATTTGGAGTCACAATCTTGGC 219
Query 483 CTCAGCCTTCCTACTCAGGGCTCACTGGGGTGGATTTGTTCATGGCTGATGTCAAAGCCT 542
|||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |
Sbjct 220 CTCAGCCTTCGTACTCAGGGCTCTCTGGGGTGGACTTGTTCATGGCTGATGTCAAAGCTT 279
Query 543 TGGAGACATATGCTGGTTACTTTTACAGTCTTTCTAAGATGTGGTCAAGACCACTTCCTG 602
||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 280 TGGAGGCATATGCTGCTTACTTTTACTGTCTTTCTAAGATGTGGTCAAGACCACTTCCTG 339
Query 603 AAGTTTATGATTCACAAGCTGTTGCAGATTACTTTAATTGCAGGCCTCATGTCGTTGCCT 662
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 340 AAGTTTATGATTCACAAGCTGTTGCAGATTACTTTAATTGCAGGCCGCATGTCGTTGCCT 399
Query 663 TTAGGCTTCTCGAGGTATTTTCTGCGTTCACGATTGCTGCCATCAGATTACGAACATCAG 722
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 400 TTAGGCTTCTCGAGGTATTTTCTGCGTTCATGGTTGCTGCCATCAGATTACGAACATCAG 459
Query 723 CATCAGTTAAGGGCAAAAGTTTAGAAGCTTCAGAGCAGATTTTTGGGATGGTGTTGAAAG 782
|||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 460 CATCAGACAAAAGCAAAAGTTTAGAAGCTTCAGAGCAGAATTTTGGGATGGTGTTGAAAG 519
Query 783 AAACCATGCTACATTTGGGCCCAACTTTTATCAAAGTTGGTCAATCGCTTTCCACGAGGC 842
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 520 AAACCATGCTACATTTGGGTCCAACTTTTATTAAAGTTGGTCAATCGCTTTCGACGAGGC 579
Query 843 CAGATATCATTGGGACTGAAATCTCCAAGGCACTATCTGAACTGCATGACCGAATCCCTC 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 CAGATATCATTGGGACTGAAATCTCCAAGGCACTATCTGAACTGCATGACCGAATCCCTC 639
Query 903 CCTTTCCCTGGCCTGAGGCTGTAAAAATCCTTGAAGGGGAATTAGGTGGTCCTGTCGAAT 962
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
Sbjct 640 CCTTTCCCTGGCCTGAGGCTGTAAAAATCATTGAAGAGGAATTAGGTGGTCCTGTCGAGT 699
Query 963 CATTCTTTAGTCAGTTTTCGCAAGAAACTGTAGCAGCAGCATCCTTTGGTCAGGTCTACC 1022
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 700 CATTCTTTAGCCAGTTTTCTCAAGAAACTGTAGCAGCAGCATCCTTTGGTCAGGTCTACC 759
Query 1023 GAGGAAGGACCCTCGATGGTGCAGATGTTGCAGTGAAAGTTCAGCGCCCTGATCTGAGAC 1082
|||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 760 GAGGAAGGACTCTTGATGGTTCAGATGTTGCAGTGAAAGTTCAGCGCCCTGATCTGAGAC 819
Query 1083 ATGCAGTGCTACGCGACATCTACATTCTGCGACTTGGGTTAGGTGTATTGCGAAAGGTAG 1142
||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||
Sbjct 820 ATGCAGTGCTACGCGACATTTACATTTTGCGACTTGGGTTAGGTGTATTACGAAAGGTAG 879
Query 1143 CAAAGAGAGAAAATGACATTCGTGTATATGCTGATGAGCTTGGAATGGGTTTGGCTGGAG 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 CAAAGAGAGAAAATGACATTCGTGTATATGCTGATGAGCTTGGAATGGGTTTGGCTGGAG 939
Query 1203 AATTGGACTTTACTTTAGAGGCTGCCAATGCCTCT-GAATTTCAGGAAGCTCACGCACGA 1261
||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 940 AATTGGACTTTACTTTAGAGGCTGCCAATGCCT-TGGAATTTCAGGAAGCTCATTCACGA 998
Query 1262 TTTTCCTATATCCGGGTTCCAAAAGTATATCAGCATCTAACGCGCAAAAGAGTTTTGACC 1321
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 999 TTTTCCTATATCCGGGTTCCAAAAGTATATAAGCATCTAACGCGCAAAAGAGTTTTGACC 1058
Query 1322 ATGGAATGGATGGTTGGTGAAAGCCCAACCGATCTACTCGCAATATCTTCTGGTTACTCT 1381
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1059 ATGGAATGGATGGTTGGTGAAAGCCCCACCGATCTACTCGCAATATCTTCTGGTTACTCT 1118
Query 1382 GATCATGACAATGAGAGTCATGAGAAA-CAAAAAATTGAAGCGAGAAGGCGTCTTCTTGA 1440
||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 1119 GATCATGACAATGAGAGTCATGA-AAAGCAAAAAATGGAAGCGAGAAGGCGTCTTCTTGA 1177
Query 1441 TCTGGTGAACAAAGGGGTAGAGGCAACTCTAGTTCAACTCCTTGATACAGGTATTTTGCA 1500
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1178 TCTAGTGAACAAAGGGGTAGAGGCAACACTAGTTCAACTCCTTGATACAGGTATTTTGCA 1237
Query 1501 TGCAGATCCGCATCCTGGAAACCTTCGTTACACAACATCAAGACAAATAGGGTTTTTGGA 1560
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1238 TGCAGATCCGCATCCTGGAAATCTGCGGTACACAACATCAAGACAAATAGGGTTTTTGGA 1297
Query 1561 CTTTGGTTTAGTTTGTCGGATGCAAAGAAAACATCAGCTTGCCATGCTCGCATCAATTGT 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 CTTTGGTTTAGTTTGTCGGATGCAAAGAAAACATCAGCTTGCCATGCTCGCATCAATTGT 1357
Query 1621 GCATATCGTAAATGGTGATTGGGCCTGTCTTGTTGAATCGTTGATTGATATGGATGTCAT 1680
|||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct 1358 GCATATCGTAAATGGTGATTGGGCCTTTCTTGTTGAATCTTTGACTGATATGGATGTCAT 1417
Query 1681 CACGCCAGGCGTTAATACCCGTCGTTTTACTCTGGATCTGGAATATGCATTGGGAGAGGT 1740
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 CACGCCAGGTGTTAATACCCGTCGTTTTACTCTGGATCTGGAATATGCATTGGGAGAGGT 1477
Query 1741 TAAACTTATAAACGGGATTCCTGATATCGAGTTCACCAAGGTGCTTAGTAAAATAGTCAA 1800
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TAAACTTAGAAACGGGATTCCTGATATCGAGTTCACCAAGGTGCTTAGTAAAATAGTCAA 1537
Query 1801 TGTGGCCCTGAAGTATCAGCTACGCATGCCACCATACTTCACACTTGTCCTCCG-T-TC- 1857
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 1538 AGTGGCCCTGAAGTATCAGCTACGCATGCCACCATACTTCACACTTGTTCTCCGTTCTCT 1597
Query 1858 T-CTTGCTT----G---CTTG-G----A-----------AGGTCTGGCTGCAGCTGGAGA 1893
| ||||||| | ||| | | ||||||||||||| |||||||
Sbjct 1598 TGCTTGCTTGGAAGTTATTTGCGTTCTATTTGTCTTCCCAGGTCTGGCTGCAACTGGAGA 1657
Query 1894 TCCAAATTTTAAGACATTTGAGGCAGCATACCCTTTTGTGGTTCAAAAGCTCATCACTGA 1953
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1658 TCCAAACTTTAAGACATTTGAGGCTGCATACCCTTTTGTGGTTCAAAAACTCATCACTGA 1717
Query 1954 AAATTCAGCTGCAACAAGGAAGATTCTTCATTCGGCAGTCCTTAACCGAAAGAAGGAATT 2013
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1718 AAATTCAGCTGCAACAAGGAAGATTCTTCATTCGGCAGTCCTTAACAGAAAGAAGGAATT 1777
Query 2014 CCGATGGGAAAGGGTTGCTCTTTTCCTGAGTAAAAGTTCTACGAGGAAACAATCGCCACT 2073
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1778 CCGATGGGAAAGGGTTGCTCTTTTCCTGAGTAAAAGTTCGACGAGGAAACAATCGCCACT 1837
Query 2074 GCTAAAGTTATCAAGGGATGAAACTTCTGTTGATAGTAGTTCCAATCTAACGGACAAAGA 2133
| ||| |||||| |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1838 GGTAACGTTATCGAGGGATGAAACTTCTGTTGATAGTAGTTCCAATCCAACGGAAAAAGA 1897
Query 2134 TGCTGACAATGTAAGTTTGGTCTTGAGACTTTTGGCATCCAAAAATGGTGTGGTTCTTAG 2193
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1898 TGCTGACAATGTAAGTTTGGTCTTGAGACTTTTGGCATCCAAAAACGGTGTGGTTCTTAG 1957
Query 2194 AAGACTCTTGATGGCTGCGAACGGGACTTCACTGATCCGGACATTTATTTCAAGAGAGGC 2253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1958 AAGACTCTTGATGGCTGCGAACGGGACTTCACTGATCCGGACATTTATTTCAAGAGAGGC 2017
Query 2254 ACTTGTCATACGCCAGAAACTTTGCATGACGATTGCAACTACGATGTACCAATGGATGGT 2313
|| |||||| ||||||||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct 2018 ACATGTCATCCGCCAGAAACTTTGCCTGACAATTGCAAATACGATGTACCAATGGATGGT 2077
Query 2314 TGGAAGCCTTGGAATTGAATCCCTTAAATTCATTTCTCTTTCAGACCCACCACCATCTTC 2373
|||||||| ||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 2078 CGGAAGCCTCGGAATTGAATCCCTTAAATTCATCTCTCTTTCAGACCCACAACTATCTTC 2137
Query 2374 AGGAATCAACATTACAGTCAAAGACTTCAAGATTCTAAT-CAATGACAAGCGGGTCAGAG 2432
|||||||||||||||||||||||||||||||||||| || | ||||| || |||||||
Sbjct 2138 AGGAATCAACATTACAGTCAAAGACTTCAAGATTCTGATACGC-GACAAACGTGTCAGAG 2196
Query 2433 TAATACTGAGAAAGATACTGGAGTCTGCAAAGAGTGACCGAGTTTTGATGCTCAGATTCT 2492
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2197 TGATACTGAGAAAGATACTGGAGTCTGCAAAGAGTGACCGAATTTTGATGCTCAGATTCT 2256
Query 2493 GCTGGACTTCCTTTGTCATGTCTCTCACCACCACTGCGCTTGCTTGCCATCGGTTTGTGA 2552
|||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| |
Sbjct 2257 GCTGGACTTCTTTTGTCATGTCTCTCACAACCACTGCTCTCGCTTGCCATCGGTTTGTTA 2316
Query 2553 TCTCGGTCTCTGAAGGTTACGTCAACTACTTATCTCTGTCTGCTCCAGTCGCACTTCGTA 2612
| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 2317 TATCGGTCTCTGAAGGTTACGTCAACTACTTATCTTTGTCTGCTCCAGTTGCACTTCGTA 2376
Query 2613 CCTGA 2617
|||||
Sbjct 2377 CCTGA 2381
> Ahg893023 jgi|Araly1|893023|Al_scaffold_0006_1019
Length=792
Score = 124 bits (67), Expect = 3e-27
Identities = 77/82 (94%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 929 ATCCTTGAAGGGGAATTAGGTGGTCCTGTCGAATCATTCTTTAGTCAGTTTTCGCAAGAA 988
||| |||||| |||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 487 ATCATTGAAGAGGAATTAGGTGGTCCTGTCGAATCTTTCTTTAGCCAGTTTTCTCAAGAA 546
Query 989 ACTGTAGCAGCAGCATCCTTTG 1010
||||||||||||||||||||||
Sbjct 547 ACTGTAGCAGCAGCATCCTTTG 568
> Ahg920939 jgi|Araly1|920939|scaffold_102220.1
Length=444
Score = 89.8 bits (48), Expect = 1e-16
Identities = 52/54 (96%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 817 AGTTGGTCAATCGCTTTCCACGAGGCCAGATATCATTGGGACTGAAATCTCCAA 870
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 135 AGTTGGTCAATCCCTTTCGACGAGGCCAGATATCATTGGGACTGAAATCTCCAA 188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106995498205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5