BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39250.1
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321616 jgi|Araly1|321616|fgenesh1_pm.C_scaffold_4001673 1404 0.0
> Ahg321616 jgi|Araly1|321616|fgenesh1_pm.C_scaffold_4001673
Length=963
Score = 1404 bits (760), Expect = 0.0
Identities = 910/980 (93%), Gaps = 19/980 (2%)
Strand=Plus/Plus
Query 143 ATGTTGGACCTCAACCTCGGAATCTTGTCGACACACAACGAAGATGAAGATTGCAAAGTA 202
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGTTGGACCTCAACCTCGGAATCTTGTCGACACACAACGAAGACGAAGATTGCAAAGTA 60
Query 203 CCAACTTCCATC-TTCATTCAAGAAGAAGATTCCATTAATCCCTCAAACGACAACTTGTC 261
||||| |||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCAACCTCCATCGTCCA-TCAAGAAGAAGATTCCATTAATCCCTCAAACGACAACTTGTC 119
Query 262 TTTGATTACATTTGGAATCCTTAAACGAAACGTCGAA-Atccttcctcctccccctcctc 320
||| |||||||| |||||||||||| |||| ||| | || | ||| ||
Sbjct 120 TTTAATTACATTCGGAATCCTTAAAAGAAA---AGAAGA-GGTT-GAAAT---CCT--TC 169
Query 321 ctcctcctcctcctcctcctTCGGAAAATGAACTCTCCGGCCCCGGAAATGAGTGGTTGG 380
||||||||||||||||| | |||| | || | |||||| ||||||| |||||||||
Sbjct 170 CTCCTCCTCCTCCTCCT-C--CGGAGAGTGTGTTATCCGGCGCCGGAAACGAGTGGTTGA 226
Query 381 ATCTTTCGTCGATGCAAAGAAATAAACAAGAAACGTTGGTGATGAAGaaaaaaaGTCGAC 440
|||| |||||||||||||||||||||||||||| ||||||||||||||| || || ||||
Sbjct 227 ATCTGTCGTCGATGCAAAGAAATAAACAAGAAATGTTGGTGATGAAGAAGAAGAGCCGAC 286
Query 441 GTGGCCCAAGATCAAGAAGCTCTCATTATCGTGGCGTTACCTTTTACCGTCGAACCGGCC 500
|||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 287 GTGGTCCAAGATCCAGAAGCTCCCATTATCGTGGCGTCACCTTTTACCGTCGAACTGGCC 346
Query 501 GTTGGGAATCTCATATTTGGGACTGTGGAAAACAAGTTTATTTGGGTGGTTTCGACACAG 560
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 347 GTTGGGAATCTCATATTTGGGACTGTGGAAAACAGGTTTATTTGGGTGGTTTCGACACAG 406
Query 561 CCTACACAGCCGCAAGAGCGTACGACCGAGCTGCTATCAGATTCCGGGGACTCCAAGCAG 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CCTACACAGCCGCAAGAGCGTACGACCGAGCTGCTATCAGATTCCGGGGACTCCAAGCAG 466
Query 621 ATATCAACTTTATCGTGGATGATTACAAACAAGACATTGAAAAGATGAAGAATTTAAGCA 680
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 467 ATATCAATTTTATCGTGGATGATTACAAACAGGACATTGAAAAGATGAAGAATTTAAGCA 526
Query 681 AAGAAGAGTTTGTGCAATCTCTTAGACGAGCGAGTGCAAGCTTAGCAAGAGGAGGTTCTA 740
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 527 AAGAAGAGTTTGTGCAATCTCATAGACGAGCGAGTGCAAGCTTAGCAAGAGGAGGTTCTA 586
Query 741 AATACAAAAACACCCATATGAGAAATGATCACATCCATCTCTTCCAAAACAGGGGATTGA 800
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 587 AATACAAAAACACCCATACGAGAAATGATCACATCCATCTCTTCCAAAACAGGGGATGGA 646
Query 801 ATGCAGCAGCAGCAAAATGCAATGAGATAAGAAAGATGGAAGGGGATATTAAGTTGGGTG 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 ATGCAGCAGCAGCAAAATGCAATGAGATAAGAAAGATGGAAGGGGATATTAAGTTGGGTG 706
Query 861 CCCATAGTAAAGGAAATGAGCACAACGATCTCGAGCTAAGTCTTGGGATATCTTCATCGT 920
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 707 CCCATAATAAAGGAAATGAGCACAACGATCTCGAGCTAAGTCTTGGAATATCTTCATCGT 766
Query 921 CAAAAGTTAGAATTTTGGAACCAGCAGATTATTACATGGGTTTGAATCGATCGGTGACGA 980
||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 767 CAAAAAAAAGAATTTTGGAACCAGCAGATTATTACATGGGTTTGAATCGATCTGTGATGA 826
Query 981 GTTTGCATGGGAAGCCGTTGCCGGGATATCTACCGATCACAGAAATTAAACCGTTAAAGA 1040
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 827 GTTTGCATGGGAAGCCGTTGCCGGTATATCTACCGATCACAGAAATGAAACCGTTAAAGA 886
Query 1041 CAGTTGTAGCATCATCAGGATTCCCTTTCATTACCATGATCAATCCTTCTTCTTTGTCCT 1100
|||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||
Sbjct 887 CAGTTGTAGCATCATCAGGATTCCCTTTCATTGCCATGAACAATTCTTCTTCTTTGACC- 945
Query 1101 TATCTTGTTTTGATCCATGA 1120
| |||||||||||||||||
Sbjct 946 -A-CTTGTTTTGATCCATGA 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46471835823
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5