BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39270.1 Length=1162 Score E Sequences producing significant alignments: (Bits) Value Ahg482946 jgi|Araly1|482946|fgenesh2_kg.4__2006__AT2G39270.1 1724 0.0 Ahg897523 jgi|Araly1|897523|Al_scaffold_0005_1489 771 0.0 Ahg482947 jgi|Araly1|482947|fgenesh2_kg.4__2007__AT2G39280.1 132 7e-30 > Ahg482946 jgi|Araly1|482946|fgenesh2_kg.4__2006__AT2G39270.1 Length=1176 Score = 1724 bits (933), Expect = 0.0 Identities = 1098/1176 (93%), Gaps = 18/1176 (2%) Strand=Plus/Plus Query 1 TTCTTCTCTCCATGGCGGTTTCTCACCGTCTCCTCAGGCCGGCGACGACGACGATAAAGA 60 |||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 1 TTCTTCTCTCCATGGCGGTTTCTCACCGTCTCTTCAGGCCGGCGACGACGATGGCGAAGA 60 Query 61 ATActttttcttctctctttattaggtc----tc-tc-tc-t--tcttcttcgtctGGGT 111 ||||| |||||||| |||| |||||||| || || || | |||||||||||||||| Sbjct 61 ATACTCTTTCTTCTTTCTTAATTAGGTCTATTTCTTCTTCTTCCTCTTCTTCGTCTGGGT 120 Query 112 CCTCGCTAGACCCCAAAATCGATCTGGAGGAGGCTGCGGCTCAGCTCGGGAAG--T-C-T 167 |||||||||||||||||||||||||||||||||| ||| ||||||||| |||| | | | Sbjct 121 CCTCGCTAGACCCCAAAATCGATCTGGAGGAGGCCGCGTCTCAGCTCGAGAAGTCTACGT 180 Query 168 -T-CGTCTACGTCAACGTCTCCATACAAAGGCAGAAATTTCCACTGGGTGTTTCTTGGAT 225 | ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTACGTCTCCGTCTCCGTCTCCATACAAAGGCAGAAATTTCCACTGGGTGTTTCTTGGAT 240 Query 226 GTCCTGGTGTTGGTAAAGGAACCTATGCCTCTCGTCTCTCTTCTCTCCTCGGCGTTCCTC 285 |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| Sbjct 241 GTCCTGGTGTTGGTAAAGGAACGTATGCTTCACGTCTCTCTTCTCTCCTCGGCGTTCCTC 300 Query 286 ATATTGCCACTGGTGATCTCGTTCGTGAAGAGctctcctcctctggcctcctctcctctc 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATATTGCCACTGGTGATCTCGTTCGTGAAGAGCTCTCCTCCTCTGGCCTCCTCTCCTCTC 360 Query 346 AGCTCAAGGAGCTTGTTAACCATGGAAAACTAGTTCCTGATGAATTCATAATAAGTTTGT 405 |||| |||||||||||||||||||| ||| | |||||||||||||||||||||||||||| Sbjct 361 AGCTGAAGGAGCTTGTTAACCATGGGAAATTGGTTCCTGATGAATTCATAATAAGTTTGT 420 Query 406 TATCAAAGCGTCTCCAAGCTGGCAAAGACAAGGGTGAATCTGGATACATTCTTGATGGTT 465 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 421 TATCAAAGCGTCTCCAAGCTGGCAAAGAGAAGGGTGAATCTGGATACATTCTTGATGGTT 480 Query 466 TTCCACGCACCGTGACTCAAGCGGAAATACTGGAGGGAGTAACTAATATCGATCTGGTGA 525 ||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 481 TTCCACGAACCGTGACACAAGCGGAAATACTGGAGGGGGTAACTAATATCGATCTGGTGA 540 Query 526 TTAACCTGAAGCTACGAGAAGAGGCATTGCTTGCGAAATGTTTAGGAAGAAGAATTTGCA 585 | ||||||||||| |||||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 541 TCAACCTGAAGCTTCGAGAAGAGGCACTACTTGCCAAATGTTTAGGAAGAAGAATTTGCA 600 Query 586 GCGAGTGTGGTGGAAACTATAACGTTGCCTGCATTGATATCAAAGGTGATGATGATACTC 645 | |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| || Sbjct 601 GTGAGTGTGGTGCAAACTATAACGTTGCGTGCATTGATATCGAAGGTGATGATGATAGTC 660 Query 646 CCAGAATGTATATGCCTCCTCTTCTTCCTCCGCCAAACTGTGAATCGAAGCTTATAAGCC 705 |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 661 CCAGAATGTACATGCCTCCTCTTCTTCCTCCGCCAAACTGTGCATCGAAGCTTATAAGCC 720 Query 706 GAGCTGATGACACTGAAGAAGTTGTCAAGGAAAGACTCAGGATTTACAACAAAATGACTC 765 ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 721 GAGCTGATGACACCGAAGACGTTGTCAAGGAAAGACTCCGGATTTACAACAAAATGACTC 780 Query 766 AACCAGTGGAGGAATTCTACAAGAAACGCGGGAAGCTGTTGGAATTTGAATTGCCCGGTG 825 |||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||||| Sbjct 781 TACCAGTGGAGGAATTCTACAAGAAGCGCAGGAAGCTATTGGAATTTGAATTACCCGGTG 840 Query 826 GAATCCCAGAGTCATGGGCAAGGCTCCTTAGGGCATTACACCTTGAAGACGATAAACAGT 885 |||| |||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| Sbjct 841 GAATTCCAGAGTCATGGCCAAGGCTCCTTAGAGCATTACACCTTGAAAACGATAAACAGT 900 Query 886 CTGCAATAGCCTAATCTCTCTCTGCATTTTATGATTGAATCAAACAACTTGTACTACATT 945 ||||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct 901 CTGCAATAGCCTAATTTCTCTCGGCATTGTATGATTGAATCAAACAGCTTGTACTACATT 960 Query 946 CTTTGCTCGAGTAATCCTCCTCGTGCATATATGCTTAAGATAGTCAATAAAAGAGATACA 1005 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 CTTTGCTCGAGTAATCCTCCTCGTGCATATATGCTTAAGATAGTCAATAAAAGAGATACA 1020 Query 1006 TGTCCCACTATGGTTATTTGATGCATATATTATATAGTGAAGTTTCTTTGTGGCTTCTGG 1065 |||||| | |||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 1021 TGTCCCTTTGTGGTTATTTGATGCATATATTATATAGTAAAGTTTCTTTGTGGATTCTGG 1080 Query 1066 TCCACTATAGATAGTTGAAAACTCTTTGTCATA-A--CAGAGGTTTGACTTACAACGAAT 1122 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1081 TCCACTATAGATAGTTGAAAACTCTTTGTCATACAAACAGAGGTTTGACTTACAACGAAT 1140 Query 1123 TGTTTATATATGCTTACCAAAGAAATTATGTAATTC 1158 ||||| ||||||||||||||| |||||||||||||| Sbjct 1141 TGTTTCTATATGCTTACCAAAAAAATTATGTAATTC 1176 > Ahg897523 jgi|Araly1|897523|Al_scaffold_0005_1489 Length=708 Score = 771 bits (417), Expect = 0.0 Identities = 480/510 (94%), Gaps = 6/510 (1%) Strand=Plus/Plus Query 141 GAGGCTGCGGCTCAGCTCGGGAAGTCTTCGTCTACGT-CA-----ACGTCTCCATACAAA 194 ||||| ||| ||||||||| ||||||||| ||||||| || |||||||||||||| Sbjct 10 GAGGCCGCGTCTCAGCTCGAGAAGTCTTCCTCTACGTCCACGTCTCCGTCTCCATACAAA 69 Query 195 GGCAGAAATTTCCACTGGGTGTTTCTTGGATGTCCTGGTGTTGGTAAAGGAACCTATGCC 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 70 GGCAGAAATTTCCACTGGGTGTTTCTTGGATGTCCTGGTGTTGGTAAAGGAACCTATGCC 129 Query 255 TCTCGTCTCTCTTCTCTCCTCGGCGTTCCTCATATTGCCACTGGTGATCTCGTTCGTGAA 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 TCTCGTCTCTCTTCTCTCCTCGGCGTTCCTCATATTGCCACTGGTGATCTCGTTCGTGAA 189 Query 315 GAGctctcctcctctggcctcctctcctctcAGCTCAAGGAGCTTGTTAACCATGGAAAA 374 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 190 GAGCTCTCCTCCTCTGGCCTCCTCTCCTCTCAGCTGAAGGAGCTTGTTAACCATGGGAAA 249 Query 375 CTAGTTCCTGATGAATTCATAATAAGTTTGTTATCAAAGCGTCTCCAAGCTGGCAAAGAC 434 | ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 250 TTGGTTCCTGATGAATTCATTATAAGTTTGTTATCAAAGCGGCTCCAAGCTGGCAAAGAG 309 Query 435 AAGGGTGAATCTGGATACATTCTTGATGGTTTTCCACGCACCGTGACTCAAGCGGAAATA 494 || ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| | | Sbjct 310 AATGGTGAATCTGGTTACATTCTTGATGGTTTTCCACGAACCGTGACACAAGCGGATACA 369 Query 495 CTGGAGGGAGTAACTAATATCGATCTGGTGATTAACCTGAAGCTACGAGAAGAGGCATTG 554 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 370 CTGGAGGGAGTAACTAATATCGATCTGGTGATCAACCTGAAGCTTCGAGAAGAGGCATTA 429 Query 555 CTTGCGAAATGTTTAGGAAGAAGAATTTGCAGCGAGTGTGGTGGAAACTATAACGTTGCC 614 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 430 CTTGCGAAATGTTTAGGAAGAAGAATTTGCAGCGAGTGTGGTGCAAACTATAACGTTGCG 489 Query 615 TGCATTGATATCAAAGGTGATGATGATACT 644 |||||||||||| ||||||||||||||||| Sbjct 490 TGCATTGATATCGAAGGTGATGATGATACT 519 > Ahg482947 jgi|Araly1|482947|fgenesh2_kg.4__2007__AT2G39280.1 Length=2512 Score = 132 bits (71), Expect = 7e-30 Identities = 83/88 (94%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 1078 AGTTGAAAACTCTTTGTCAT---AACAGAGGTTTGACTTACAACGAATTGTTTATATATG 1134 |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 2512 AGTTGAAAACTCTTTGTCATACAAACAGAGGTTTGACTTACAACGAATTGTTTCTATATG 2453 Query 1135 CTTACCAAAGAAATTATGTAATTCAATA 1162 ||||||||| |||||||||||||||||| Sbjct 2452 CTTACCAAAAAAATTATGTAATTCAATA 2425 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43345756629 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5