BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39310.1
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482950 jgi|Araly1|482950|fgenesh2_kg.4__2010__AT2G39310.1 2313 0.0
Ahg485068 jgi|Araly1|485068|fgenesh2_kg.5__1060__AT2G39310.1 1485 0.0
Ahg482953 jgi|Araly1|482953|fgenesh2_kg.4__2013__AT2G39330.1 1471 0.0
Ahg937417 jgi|Araly1|937417|scaffold_501608.1 289 5e-77
> Ahg482950 jgi|Araly1|482950|fgenesh2_kg.4__2010__AT2G39310.1
Length=1585
Score = 2313 bits (1252), Expect = 0.0
Identities = 1493/1603 (93%), Gaps = 42/1603 (3%)
Strand=Plus/Plus
Query 7 CTTCCATC-ATTCAGAGCTCAATAATTAACTGATTCGAAATGGCGAAGATGTACCGGAAG 65
|||||||| ||| |||||||||||||| |||||| ||||||||||| |||||||||||||
Sbjct 1 CTTCCATCAATT-AGAGCTCAATAATTTACTGATACGAAATGGCGAGGATGTACCGGAAG 59
Query 66 TTGGCACTCTGCGGTGGTGAGGGAGGACAA-GAATGGGACGACGATGTATATGAGGGTG- 123
|||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||
Sbjct 60 TTGGCACTCTGCGGTGGTGAAGGAGGA-AAGGAATGGGACGACGATGTATATGAGGGTGT 118
Query 124 TAAGAAAAGTGTATGTAGGGCAAGATCTCAACCGTATCACTTACATCAAGTTTGAGTACG 183
| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 119 TCA-AAAAGTGTATGTAGGGCAAGATCTCAACCGTATCACTTACATCAAATTTGAGTACG 177
Query 184 TGCAGGAAGACGGCGAAGTAGTAACAACTGAATATGGGACAACAAATCAGCACCCTAAAG 243
|| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 178 TGAAGGAAGACGGCGAAGTAGTAACAACTGAATATGGGACAATAAATCAACACCCTAAAG 237
Query 244 AGTTTGTAATTCAATACCCGGACGAACACATCATAGCAGTGGAGGGAAGTTACCACCAAG 303
|||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| ||
Sbjct 238 AGTTTGTACTTCAATACCCGGACGAACACATCATAGCAATGGAGGGAAGCTACCACCCAG 297
Query 304 TGGCTCTCATTGCCACAGAGGTGATTACGTCCCTCGTCTTCAAGACCTCAAAGGGTAGAA 363
| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 298 TAGCTCTCATTGCCACGGAGGTAATTACGTCCCTCGTGTTCAAGACCTCAAAGGGTAG-A 356
Query 364 AG-TCTCCATTGTTTGGTCCAAACTTACTTGGAATTACGACCGGTACAAAGTTTGTTTTT 422
| |||||| |||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 357 TGCTCTCCAACGTTTGGTCCAAACTTATTTGGAATTACGAGCGGTACAAAGTTTGTTTTT 416
Query 423 GAGGATGAGGGAAAGAAGATCGTAGGGTTTCATGGACGGGCAGGTGATGCTGTCGACGCT 482
||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 417 GAGAATGAGGGAAAGAAGATCGTAGGGTTTCATGGACGGGCAGGTGATGCTCTTGACGCT 476
Query 483 CTTGGAGTTTACTTTGTATTGGATACCACGCCGTTCCCTCTTTACAAGCTTGATGCCCAA 542
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 477 CTTGGAGTTTACTTTGTATTGGATACCACGCCGTTCCCTCTTTACAAGCTGGATGCCCAA 536
Query 543 GGTGGTACAGACGGGCGTGTTTGGGATGATGGTTCTTACGATGGCATTAAAACGCTGCGT 602
||||| |||||||||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 537 GGTGGAACAGACGGGCGTGTTTGGGATGATGGTTCTTATGACGGCCTTAAAACGCTGCGC 596
Query 603 ATTGATCAAGATAATTCTCGTATCACTTATTTAGAGGT-TGAGTACGAGAAAGACGGGGA 661
|||| | |||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct 597 ATTGGTAAAGATAATTCTCGTATCACTTATTTAGA-GTCCGAGTACGAGAAAGGTGGGGA 655
Query 662 AGCAAAAACATGTAACCATGGGGGGAAAGGAGATACACCATCCGAGTTTGTGCTTGGTTA 721
| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 656 ATCAAAGACATGTAACCATGGGGTGAAAGGAGATACACCATCCGAGTTTGTGCTTGGTTA 715
Query 722 CCCAGATGAATACATCAAATCGGTGGAAGCAACCTATCAGAAGCCAAACATTTTTAGCAA 781
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TCCAGACGAATACATCAAATCGGTGGAAGCAACCTATCAGAAGCCAAACATTTTTAGCAA 775
Query 782 TA-CGGCAATTACGTCACTTAAGTTCTTA-ACATCAAAGGGGAGAACATCATTCTTTGGG 839
|| || | ||||||||||||||||| | | ||||||||||||||||| ||||||||||||
Sbjct 776 TACCGTC-ATTACGTCACTTAAGTT-TGAGACATCAAAGGGGAGAACGTCATTCTTTGGG 833
Query 840 TATAATGTGGGTAAGAAGTTTGTGTTGGAGCAAAAGGGTCATAGGCTTGTCGGGTTCCAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TATAATGTGGGTAAGAAGTTTGTGTTGGAGCAAAAGGGTCATAGGCTTGTCGGGTTCCAT 893
Query 900 GGAAAGGAAGATGCAGCTATTGATGCTCTTGGAGCATATTTTGGACCTGTTCCTACTCCT 959
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 894 GGAAAGGAAGATGCAGCTATTGATGCTATTGGAGCATATTTTGGACCTGTTCCTACTCCT 953
Query 960 ACTCCCTTGATTCCATCTAAGAAACTACCAGCGATAGGCGGCAACGAAGGAGTTACATGG 1019
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 954 ACTCCCTTGATTCCATCCAAGAAACTACCAGCGATAGGCGGCAACGAAGGAGTTGCATGG 1013
Query 1020 GATGATGGTGTCTACGACGGTGTAAGGAAGATACTTGTAGGACAAGGTAACGATGGTGTA 1079
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1014 GATGATGGTGTCTACGACGGTGTGAGGAGGATACTTGTAGGACAAGGTAACGATGGTGTA 1073
Query 1080 TCCTTTGTCAAATTTGAGTACAGTAAGGGCAAAGACCTTGTACCCGGAGATGACCATGGG 1139
||||||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||
Sbjct 1074 TCCTTTGTCAAGTTTGAGTACAGTAAGGGCAAAGAACTTGTATCTGGAGATGACCATGGG 1133
Query 1140 AAGAAGACATTACTCGGAGCTGAAGAGTTTGTGCTTGAAGATGGTGAATATCTCATGAAC 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1134 AAGAAGACATTACTCGGAGCTGAAGAGTTTGTGCTTGAAGATGGTGAATATCTCAT-AAC 1192
Query 1200 -ATAGATGGCTACTACGATAAGATCTTCGGAGTTGAGGAACCAATAATTGTATGTCTTCA 1258
|||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct 1193 CATAGATGGCTACTACGATAAGATCTTCGGAGTCGGGGAACCAATAATTGTCTGTCTTCA 1252
Query 1259 GTTTAAGACCAACAAAAGGGAGTCAATGCCGTTTGGAATGGATTCTGGTAAGAAGTTCTC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 GTTTAAGACCAACAAAAGGGAGTCAATGCCGTTTGGAATGGATTCTGGTAAGAAGTTCTC 1312
Query 1319 GCTTGGAGAGGAAGGCCACAAGATCGTTGGATTCCATGGACAAGCTAGTGATGTTGTTCA 1378
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1313 GCTTGGAGAGGAGGGCCACAAGATCGTTGGATTCCATGGACAAGCTAGTGATGTAGTTCA 1372
Query 1379 CAGCATCGGAGTCACTATCGTGCCCATCACCACCACCGAGTGAAAACC----AG--T-T- 1430
|||||||||||||||||||||||| ||||||||||||||||||||||| | | |
Sbjct 1373 CAGCATCGGAGTCACTATCGTGCCTATCACCACCACCGAGTGAAAACCTTCTATCATATT 1432
Query 1431 AGTCATATATAC-TA--C-A--TGAAACTTCCAATAAGATTGGAgtgtgtgtgtgtgtgt 1484
||||||||||| || | | ||||||||||||||||| | || |||| ||||| |
Sbjct 1433 AGTCATATATATATATACTAAATGAAACTTCCAATAAGA----A-TG-GTGTATGTGT-T 1485
Query 1485 gtTCTCTTTACTATGTTACTTTTAATACGTGGTTGTAAGTTCAAGTAACTTACTGT--GT 1542
|| ||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||
Sbjct 1486 ---CTGTTTACTATGCTACTTTTAATATGTGGTTGTAGGTTCAAGTAACTTACTGTTTGT 1542
Query 1543 GCTAATAATTCCAATAAGATTGGCTTGTGATTTCTTGTTATTT 1585
|||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1543 GCTAATAATTCCAATAAGATTGGCGTGTGTTTTCTTGTTATTT 1585
> Ahg485068 jgi|Araly1|485068|fgenesh2_kg.5__1060__AT2G39310.1
Length=1469
Score = 1485 bits (804), Expect = 0.0
Identities = 903/949 (95%), Gaps = 13/949 (1%)
Strand=Plus/Plus
Query 534 GATGCCCAAGGTGGTACAGACGGGCGTGTTTGGGATGATGGTTCTTACGATGGCATTAAA 593
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 486 GATGCCCAAGGTGGTACAGACGGGCGTGTTTGGGATGATGGTTCTTACGACGGCGTTAAA 545
Query 594 ACGCTGCGTATTGATCAAGATAATTCTCGTATCACTTATTTAGAGGTT-GAGTACGAGAA 652
||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 546 ACGCTGCGTATTGGTCAAGATAATTCTCGTATCACTTATTTAGA-GTTCGAGTACGAGAA 604
Query 653 AGACGGGGAAGCAAAAACATGTAACCATGGGGGGAAAGGAGATACACCATCCGAGTTTGT 712
|| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AGGTGGGGAATCAAAGACATGTAACCATGGGGGGAAAGGAGATACACCATCCGAGTTTGT 664
Query 713 GCTTGGTTACCCAGATGAATACATCAAATCGGTGGAAGCAACCTATCAGAAGCCAAACAT 772
|||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 665 GCTTGGTTACACAGACGAATACATCAAATCGGTGGAAGCAACCTATCAAAAGCCAAATAT 724
Query 773 TTTTAGCAATA-CGGCAATTACGTCACTTAAGTTCTTAA-CATCAAAGGGGAGAACATCA 830
||||||||||| || | |||||||||||||||||| || ||||||||||||||||||||
Sbjct 725 TTTTAGCAATACCGTC-ATTACGTCACTTAAGTTC-GAAGCATCAAAGGGGAGAACATCA 782
Query 831 TTCTTTGGGTATAATGTGGGTAAGAAGTTTGTGTTGGAGCAAAAGGGTCATAGGCTTGTC 890
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TTCTTTGGGTATAATGTGGGTAAGAAGTTTGTGTTGGAGCAAAAGGGTCATAGGCTTGTT 842
Query 891 GGGTTCCATGGAAAGGAAGATGCAGCTATTGATGCTCTTGGAGCATATTTTGGACCTGTT 950
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GGGTTCCACGGAAAGGAAGATGCAGCTATTGATGCTCTTGGAGCATATTTTGGACCTGTT 902
Query 951 CCTACTCCTACTCCCTTGATTCCATCTAAGAAACTACCAGCGATAGGCGGCAACGAAGGA 1010
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 903 CCTACTCCTACTCCTTTGATTCCATCCAAGAAACTACCAGCAATAGGCGGCAACGAAGGA 962
Query 1011 GTTACATGGGATGATGGTGTCTACGACGGTGTAAGGAAGATACTTGTAGGACAAGGTAAC 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GTTACATGGGATGATGGTGTCTACGACGGTGTAAGGAAGATACTTGTAGGACAAGGTAAC 1022
Query 1071 GATGGTGTATCCTTTGTCAAATTTGAGTACAGTAAGGGCAAAGACCTTGTACCCGGAGAT 1130
|| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct 1023 GACGGTGTATCCTTTGTCAAGTTTGAGTACAGTAAGGGCAAAGAACTTGTATCCGGAGAT 1082
Query 1131 GACCATGGGAAGAAGACATTACTCGGAGCTGAAGAGTTTGTGCTTGAAGATGGTGAATAT 1190
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GACCATGGGAAGGAGACATTACTCGGAGCTGAAGAGTTTGTGCTTGAAGATGGTGAATAT 1142
Query 1191 CTCATGAA-CATAGATGGCTACTACGATAAGATCTTCGGAGTTGAGGAACCAATAATTGT 1249
||||| || ||||||||||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct 1143 CTCAT-AACCATAGATGGCTACTACGATAAGATCTTTGGAGTCGAGGAACCAACAATTGT 1201
Query 1250 ATGTCTTCAGTTTAAGACCAACAAAAGGGAGTCAATGCCGTTTGGAATGGATTCTGGTAA 1309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 CTGTCTTCAGTTTAAGACCAACAAAAGGGAGTCAATGCCGTTTGGAATGGATTCTGGTAA 1261
Query 1310 GAAGTTCTCGCTTGGAGAGGAAGGCCACAAGATCGTTGGATTCCATGGACAAGCTAGTGA 1369
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1262 GAAGTTCTCGCTTGGAGAGGAAGGCCATAAGATCGTTGGATTCCATGGACAAGCTAGCGA 1321
Query 1370 TGTTGTTCACAGCATCGGAGTCACTATCGTGCCCATCACCACCACCGAGTGAAAA-CCAG 1428
||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||
Sbjct 1322 TGTTGTTCACAGCATCGGAGTCACTATTGTGCCCATCACCACCACCGAGTAAAAAACCAG 1381
Query 1429 TTAGTCATATATACTACA---TGAAACTTCCAATAAGATTGGAgtgtgt 1474
| ||||||||||| |||| ||||||||||||||||||||| ||||||
Sbjct 1382 TCAGTCATATATA-TACAAAATGAAACTTCCAATAAGATTGGTGTGTGT 1429
Score = 691 bits (374), Expect = 0.0
Identities = 450/486 (93%), Gaps = 8/486 (2%)
Strand=Plus/Plus
Query 7 CTTCCATCATTCAGAGCTCAATAATTAACTGATTCGAAATGGCGAA-GATGTACCGGAAG 65
||||||||| ||||||||||| |||| ||||||| |||||||| || |||||||||||||
Sbjct 1 CTTCCATCAATCAGAGCTCAAGAATTTACTGATTTGAAATGGC-AAGGATGTACCGGAAG 59
Query 66 TTGGCACTCTGCGGTGGTGAGGGAGGACAA-GAATGGGACGACGATGTATATGAGGGTGT 124
|||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct 60 TTGGCACTCTGCGGTGGTGAAGGAGGA-AAGGAATGGGACGACGATGTATATGAGGGTGT 118
Query 125 AAGAAAAGTGTATGTAGGGCAAGATCTCAACCGTATCACTTACATCAAGTTTGAGTACGT 184
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 119 AAAAAAAGTGTATGTAGGGCAAGATCTCAACCGTATCACTTACATCAAATTTGAGTACGT 178
Query 185 GCAGGAAGACGGCGAAGTAGTAACAACTGAATATGGGACAACAAATCAGCACCCTAAAGA 244
| |||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||
Sbjct 179 GAAGGAAGACAGCGAAGTAGTAACAACTTTATATGGGACAATAAATCAACACCCTAAAGA 238
Query 245 GTTTGTAATTCAATACCCGGACGAACACATCATAGCAGTGGAGGGAAGTTACCACCAAGT 304
|||||| |||||||||| ||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 239 TTTTGTACTTCAATACCCAGACGAACACATCACAGCAGTGGAGGGAAGCTACCACCCAGT 298
Query 305 GGCTCTCATTGCCACAGAGGTGATTACGTCCCTCGTCTTCAAGACCTCAAAGGGTAGAAA 364
|||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 299 GGCTCTAATTGCCACGGAGGTAATTACGTCCCTCGTCTTCAAGACCTCAAAGGGTAGAT- 357
Query 365 G-TCTCCATTGTTTGGTCCAAACTTACTT-GGAATTACGACCGGTACAAAGTTTGTTTTT 422
| |||||| |||||||||||||||| || |||||||||| |||||||||||||||||||
Sbjct 358 GCTCTCCAACGTTTGGTCCAAACTTA-TTCGGAATTACGAGCGGTACAAAGTTTGTTTTT 416
Query 423 GAGGATGAGGGAAAGAAGATCGTAGGGTTTCATGGACGGGCAGGTGATGCTGTCGACGCT 482
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 417 GAGGACGAGGGAAAGAAGATCGTAGGGTTTCATGGACGGGCAGGTGATGCTCTCGACGCT 476
Query 483 CTTGGA 488
||||||
Sbjct 477 CTTGGA 482
> Ahg482953 jgi|Araly1|482953|fgenesh2_kg.4__2013__AT2G39330.1
Length=1593
Score = 1471 bits (796), Expect = 0.0
Identities = 1214/1411 (86%), Gaps = 47/1411 (3%)
Strand=Plus/Plus
Query 39 TTCGAAATGGCGAAGATGTACCGGAAGTTGGCACTCTGCGGTGGTGAGGGAGGACAAGAA 98
||| |||||||||| || |||||||||||| ||| || ||||||||| ||||| | |||
Sbjct 30 TTCAAAATGGCGAAAATCTACCGGAAGTTGACACGCTACGGTGGTGAAGGAGGGCGTGAA 89
Query 99 TGGGACGACGATGTATATGAGGGTGTAAGAAAAGTGTATGTAGGGCAAGATCTCAACCGT 158
|||||||| ||||||||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 90 TGGGACGATGATGTATATGAGGGTGTAAGAAAAGTGTATGTAGGACAAGATATCAATCGT 149
Query 159 ATCACTTACATCAAGTTTGAGTACGTGCAGGAAGACGGCGAAGTAGTAACAACTGAATAT 218
||||||||| |||| || ||||| ||| ||||||||||| |||||||||||| |||||||
Sbjct 150 ATCACTTACGTCAAATTCGAGTATGTGAAGGAAGACGGCAAAGTAGTAACAAGTGAATAT 209
Query 219 GGGACAACAAATCAGC-ACCCTAAAGAGTTTGTAATTCAATACCCGGACGAACACATCAT 277
||||||| |||||| | |||| |||||||||||| ||||||| |||||||||||||||||
Sbjct 210 GGGACAATAAATCAACAACCC-AAAGAGTTTGTACTTCAATATCCGGACGAACACATCAT 268
Query 278 AGCAGTGGAGGGAAGTTACCACCAAGTGGCTCTCAT-TGCCACAGAGGTGATTACGTCCC 336
||| ||||| |||| |||| | ||||||||| || |||||| |||||||| || |
Sbjct 269 AGCGGTGGAAGGAAACTACCGCGGAGTGGCTCT-ATGTGCCACGGAGGTGATCACAAATC 327
Query 337 TCGTCTTCAAGACCTCAAAGGGTAGAAAGTCTCCATTGTTTGGTCCAAACTTACTTGGAA 396
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 328 TCGTCTTCAAGACCTCAAAGGGTAGAAAGTCTCCATTGTTTGGTCCAAATTTGCTTGGAA 387
Query 397 TTACGACCGGTACAAAGTTTGTTTTTGAGGATGAGGGAAAGAAGATCGTAGGGTTTCATG 456
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 388 TTACGACCGGTACAAAGTTTGTTATTGAGGATGGGGGAAAGAAGATCGTAGGGTTTCATG 447
Query 457 GACGGGCAGGTGATGCTGTCGACGCTCTTGGAGTTTACTTTGTA-TTGG----AT-ACCA 510
||||| | ||| ||||| | ||||| |||||||||||||||||| ||| | ||||
Sbjct 448 GACGGTCGGGTAATGCTCTAGACGCGCTTGGAGTTTACTTTGTACATGGCTCTCTAACCA 507
Query 511 CGCCGTTC-CCTCTTTACAAGCTTGATGCCCAAGGTGGTACAGACGGG-CGTGTTTGGGA 568
|| | | | ||| |||||||||| ||||| ||||||||| ||| ||| |||||||||||
Sbjct 508 CGTC-TCCGCCTGTTTACAAGCTGGATGCGCAAGGTGGTCCAG-GGGGACGTGTTTGGGA 565
Query 569 TGATGGTTCTTACGATGGCATTAAAACGCTGCGTATTGATCAAGATAATTCTCGTATCAC 628
||||||||||||||| ||| ||||| |||||||||||| |||||||||||||||||| ||
Sbjct 566 TGATGGTTCTTACGACGGCGTTAAATCGCTGCGTATTGGTCAAGATAATTCTCGTATAAC 625
Query 629 TTATTTAGAGGTTGAGTACGAGAAAGACGGGGAAG-CAAAAACATGTAACCATGGGGGGA 687
|||||||||| ||||||||||||||| | || ||| | | ||| || ||||||||| ||
Sbjct 626 TTATTTAGAGTTTGAGTACGAGAAAGGC-GGTAAGTTAGAGACACGTCACCATGGGGTGA 684
Query 688 AAGGAGATACACCATC-C-G-AGTTTGTGCTTGGTTACCCAG-ATGAATACATCAAATCG 743
|| ||| | | ||| | | |||||| || | | |||| | |||||||||| ||||||
Sbjct 685 AACAAGA-A-A-GATCGCTGAAGTTTGAGC-T--TAACCC-GAATGAATACATTAAATCG 737
Query 744 GTGGAAGCAACCTATCAGAAGCCAAACATT-TTTAGCAAT-ACGGCAATTACGTCAC-TT 800
||||||||||||||| | || ||| || || || | ||| || | ||||| || | ||
Sbjct 738 GTGGAAGCAACCTATGATAAACCAGAC-TTCTTCCGAAATGTCGTC-ATTACATCGCTTT 795
Query 801 AAGTTCT-TAACATCAAAGGGGAGAACATCATTCTTTGGGTATAATGTG-GGTAAGAAGT 858
| || | |||||| ||||||| ||||||||||| ||| ||||| | | ||||||||||
Sbjct 796 CA-TT-TGAAACATCGAAGGGGAAAACATCATTCTCTGGATATAA-GGGTGGTAAGAAGT 852
Query 859 TTGTGTTGGAGCAAAAGGGTCATAGGCTTGTCGGGTTCCATGGAAAGGAAGATGCAGCTA 918
|| | | ||||| ||||||| || ||||||||||||||||||||||||| | ||||||
Sbjct 853 TTAAGCTAGAGCAGAAGGGTCGCAGACTTGTCGGGTTCCATGGAAAGGAAGGTTCAGCTA 912
Query 919 TTGATGCTCTTGGAGCATATTTTGGACCTGTTCCTACTCCTACTCCCT-TGATTCCATCT 977
|||||||||||||||||||||||| |||||||||||| || ||| ||| | |||||| |
Sbjct 913 TTGATGCTCTTGGAGCATATTTTGCACCTGTTCCTACACCGACT-CCTATAATTCCAGCC 971
Query 978 AAGAAACTACCAGCGA-TAGGCGGCAACGAAGGAGTTACATGGGATGATGGTGTCTACGA 1036
|||||||||||||| | |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 972 AAGAAACTACCAGC-AGTAGGCGGCAACGGAGGAGTTGCATGGGATGATGGTGTCTACGA 1030
Query 1037 CGGTGTAAGGAAGATACTTGTAGGACAAGGTAACGATGGTGTATCCTTTGTCAAATTTGA 1096
|||||| |||| |||||||||||||||||| |||||||||||| |||||||||| |||||
Sbjct 1031 CGGTGTGAGGAGGATACTTGTAGGACAAGGAAACGATGGTGTAGCCTTTGTCAAGTTTGA 1090
Query 1097 GTACAGTAAGGGCAAAGACCTTGTACCCGGAGATGACCATGGGAAGAAGACATTACTCGG 1156
||||| ||| || ||||| ||||| ||||||| ||||||||||||| ||||||||||||
Sbjct 1091 GTACAATAAAGGAAAAGATGTTGTATCCGGAGAGGACCATGGGAAGATGACATTACTCGG 1150
Query 1157 AGCTGAAGAGTTTGTGCTTGAAGATGGTGAATATCTCATGAACATAGATGGCTACTACGA 1216
| |||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 1151 AACTGAAGAGTTTGTGCTTGAAGATGGTGAATATCTAATGGCCATAGATGGTTACTACGA 1210
Query 1217 TAAGATCTTCGGAGTTGAGGA-ACCAATAATTGTATGTCTTCAGTTTAAGACCAACAAAA 1275
|||||| |||||||| || || ||| || || | ||||||||||||||||| |||||||
Sbjct 1211 TAAGATTTTCGGAGTCGA-GACACCGATGATAATTTGTCTTCAGTTTAAGACGAACAAAA 1269
Query 1276 GGGAGTCAA-TGCCGTTTGGAATGGATTCTGGTAAGAAGTTCTCGCTTGGAGAGGA-AGG 1333
||||||||| | ||||||||||||||||| ||| |||||||||| || ||||| || |||
Sbjct 1270 GGGAGTCAACT-CCGTTTGGAATGGATTCCGGTGAGAAGTTCTCACTCGGAGA-GATAGG 1327
Query 1334 CCACAAGATCGTTGGATTCCATGGACAAGCTAGTGATGTTGTTCACAGCATCGGAGTCAC 1393
|||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1328 CCACAAGATCGTCGGATGCCACGGACAAGCTAGTGATGTTGTTCACAGCATCGGAGTCAC 1387
Query 1394 TATCGTGCCCATCACCACCACCGAGTGAAAA 1424
| ||||||| |||||||| ||| ||||||||
Sbjct 1388 TGTCGTGCCAATCACCACAACCAAGTGAAAA 1418
> Ahg937417 jgi|Araly1|937417|scaffold_501608.1
Length=604
Score = 289 bits (156), Expect = 5e-77
Identities = 228/262 (87%), Gaps = 8/262 (3%)
Strand=Plus/Plus
Query 1167 TTTGTGCTTGAAGATGGTGAATATCTCATGA-ACATAGATGGCTACTACGATAAGATCTT 1225
|||||||||||||||||||||||||| | | ||||||||||| |||||||||||| ||
Sbjct 330 TTTGTGCTTGAAGATGGTGAATATCT-AACAGCCATAGATGGCTTCTACGATAAGATTTT 388
Query 1226 CGGAGTTGAGGA-ACCAATAATTGTATGTCTTCAGTTTAAGACCAACAAAAGGGAGTCAA 1284
|||||| || || ||| || || | ||||||||||||||||| || |||||||||||||
Sbjct 389 CGGAGTCGA-GACACCGATGATAATCTGTCTTCAGTTTAAGACGAATAAAAGGGAGTCAA 447
Query 1285 -TGCCGTTTGGAATGGATTCTGGTAAGAAGTTCTCGCTTGGAGAGGA-AGGCCACAAGAT 1342
| |||||||||||||| || ||| |||||||||| | ||||| || ||||||||||||
Sbjct 448 CT-CCGTTTGGAATGGACTCCGGTGAGAAGTTCTCAATCGGAGA-GATAGGCCACAAGAT 505
Query 1343 CGTTGGATTCCATGGACAAGCTAGTGATGTTGTTCACAGCATCGGAGTCACTATCGTGCC 1402
||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 506 CGTCGGATGCCACGGACAAGCTAGTGATGTTGTTCACAGCATCGGAGTCACTGTCGTGCC 565
Query 1403 CATCACCACCACCGAGTGAAAA 1424
|||||||| ||| ||||||||
Sbjct 566 AATCACCACAACCAAGTGAAAA 587
Score = 211 bits (114), Expect = 1e-53
Identities = 172/200 (86%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 816 AAGGGGAGAACATCATTCTTTGGGTATAATGTG-GGTAAGAAGTTTGTGTTGGAGCAAAA 874
||||||| ||||||||||| ||| ||||| | | |||||||||||| | | ||||| ||
Sbjct 132 AAGGGGAAAACATCATTCTCTGGATATAA-GGGTGGTAAGAAGTTTAAGCTAGAGCAGAA 190
Query 875 GGGTCATAGGCTTGTCGGGTTCCATGGAAAGGAAGATGCAGCTATTGATGCTCTTGGAGC 934
||||| | |||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 191 GGGTCGCAAGCTTGTCGGGTTCCATGGAAAGGAAGGTTCAGCTATTGATGCTCTTGGAGC 250
Query 935 ATATTTTGGACCTGTTCCTACTCCTACTCCCT-TGATTCCATCTAAGAAACTACCAGCGA 993
||||||||||| | |||||||||| ||||| | | ||| || | |||||||||||||| |
Sbjct 251 ATATTTTGGACATATTCCTACTCCGACTCC-TATAATTGCAGCCAAGAAACTACCAGCAA 309
Query 994 TAGGCGGCAACGAAGGAGTT 1013
|||| ||||||| |||||||
Sbjct 310 TAGGTGGCAACGGAGGAGTT 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60334948080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5