BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39330.1
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482953 jgi|Araly1|482953|fgenesh2_kg.4__2013__AT2G39330.1 2331 0.0
Ahg482950 jgi|Araly1|482950|fgenesh2_kg.4__2010__AT2G39310.1 1528 0.0
Ahg485068 jgi|Araly1|485068|fgenesh2_kg.5__1060__AT2G39310.1 1044 0.0
Ahg937417 jgi|Araly1|937417|scaffold_501608.1 390 1e-107
> Ahg482953 jgi|Araly1|482953|fgenesh2_kg.4__2013__AT2G39330.1
Length=1593
Score = 2331 bits (1262), Expect = 0.0
Identities = 1503/1615 (93%), Gaps = 34/1615 (2%)
Strand=Plus/Plus
Query 14 AGATCAAGAATTTAC--AGTATTTGAAAAAATACAAAATGGCGAAAATCTACCGGAAGTT 71
||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1 AGATCAAGAATTTACAGAGTATTTG--AAACTTCAAAATGGCGAAAATCTACCGGAAGTT 58
Query 72 GACAGGCTACGGTGGTGAAGGAGGGCGTGAATGGGACGATGATGTATATGAGGGTGTAAG 131
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GACACGCTACGGTGGTGAAGGAGGGCGTGAATGGGACGATGATGTATATGAGGGTGTAAG 118
Query 132 AAAAGTGTATGTAGGACAAGATATCAATCGTATCACTTACGTCAAATTCGAGTATGTGAA 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AAAAGTGTATGTAGGACAAGATATCAATCGTATCACTTACGTCAAATTCGAGTATGTGAA 178
Query 192 GGAAGACGGCCAAGTCGTAACAACTGAATATGGGAAAATCATTCAACAACCCAAAGAGTT 251
|||||||||| |||| ||||||| ||||||||||| ||| | ||||||||||||||||||
Sbjct 179 GGAAGACGGCAAAGTAGTAACAAGTGAATATGGGACAATAAATCAACAACCCAAAGAGTT 238
Query 252 TGTACTTCAATATCCGGACGAACATATCATAGCGGTGGAAGGAAACTATCGCGGAGTGGC 311
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 239 TGTACTTCAATATCCGGACGAACACATCATAGCGGTGGAAGGAAACTACCGCGGAGTGGC 298
Query 312 TCTATGTGCCACAGAGGTGATCACAAACCTCGTCTTCAAGACCTCAAAGGGTAGAAAGTC 371
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 299 TCTATGTGCCACGGAGGTGATCACAAATCTCGTCTTCAAGACCTCAAAGGGTAGAAAGTC 358
Query 372 ACCACTGTTTGGTCCAAACTTGCTTGGAATTACGACCGGTACAAAGTTCGTTATTGAGGA 431
||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 359 TCCATTGTTTGGTCCAAATTTGCTTGGAATTACGACCGGTACAAAGTTTGTTATTGAGGA 418
Query 432 TGGAGGAAAGAAGATCGTAGGGTTTCATGGACGGTCGGGTAATGCTCTCGACGCGCTTGG 491
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 419 TGGGGGAAAGAAGATCGTAGGGTTTCATGGACGGTCGGGTAATGCTCTAGACGCGCTTGG 478
Query 492 AGTTTACTTTGTACATGGCTCTCTAACAACGTCTCCGCCTGTTTACAAGCTGGATGCCCA 551
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 479 AGTTTACTTTGTACATGGCTCTCTAACCACGTCTCCGCCTGTTTACAAGCTGGATGCGCA 538
Query 552 AGGTGGTACAGACGGG-CGTGTTTGGGATGATGGTTCTTACGACGGCGTTAAATCGCTGC 610
||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGGTGGTCCAGG-GGGACGTGTTTGGGATGATGGTTCTTACGACGGCGTTAAATCGCTGC 597
Query 611 GTATTGGTCAAGATAATTCTCGTATTACTTATTTAGAGTTCGAGTACGAGAAAGGCGGTA 670
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 598 GTATTGGTCAAGATAATTCTCGTATAACTTATTTAGAGTTTGAGTACGAGAAAGGCGGTA 657
Query 671 AGTTAGAGACATGTCGCCATGGGGTGAAACAAGAAAGATCACTGAAGTTTGAGCTTAACC 730
||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 AGTTAGAGACACGTCACCATGGGGTGAAACAAGAAAGATCGCTGAAGTTTGAGCTTAACC 717
Query 731 CGGATGAATACATCAAATCGGTGGAAGCAACCTATGATAAACCGGACATT-TTCCGCAAT 789
|| |||||||||| ||||||||||||||||||||||||||||| ||| || ||||| |||
Sbjct 718 CGAATGAATACATTAAATCGGTGGAAGCAACCTATGATAAACCAGAC-TTCTTCCGAAAT 776
Query 790 GTCGTCATTACATCGCTTACATTTGAAACATCGAAGGGGAGAACGTCATTCTCTGGGTAT 849
|||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 777 GTCGTCATTACATCGCTTTCATTTGAAACATCGAAGGGGAAAACATCATTCTCTGGATAT 836
Query 850 AAGGGAGGTAAGAAGTTTAAGCTAGAGCAAAAGGGTCGTAGGCTTGTCGGGTTCCATGGA 909
||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 837 AAGGGTGGTAAGAAGTTTAAGCTAGAGCAGAAGGGTCGCAGACTTGTCGGGTTCCATGGA 896
Query 910 AAGGAAGGTTCAGCTATTGATGCCCTTGGAGCATATTTTGCACCTATTCCTACTCCGACT 969
||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||
Sbjct 897 AAGGAAGGTTCAGCTATTGATGCTCTTGGAGCATATTTTGCACCTGTTCCTACACCGACT 956
Query 970 CCTATAATTCCAGCCAAGAAACTACCAGCAATAGGCGGCAGCGGAGGAGTTGCATGGGAT 1029
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 957 CCTATAATTCCAGCCAAGAAACTACCAGCAGTAGGCGGCAACGGAGGAGTTGCATGGGAT 1016
Query 1030 GATGGTGTCTACGATGGTGTAAGGAAGATACTTGTAGGACAAGGTAACGATGGTGTAGCC 1089
|||||||||||||| ||||| |||| |||||||||||||||||| |||||||||||||||
Sbjct 1017 GATGGTGTCTACGACGGTGTGAGGAGGATACTTGTAGGACAAGGAAACGATGGTGTAGCC 1076
Query 1090 TTTGTCAAGTTTGAATACAATAAAGGAAAAGATCTTGTATCTGGAGATGACCATGGGAAG 1149
|||||||||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct 1077 TTTGTCAAGTTTGAGTACAATAAAGGAAAAGATGTTGTATCCGGAGAGGACCATGGGAAG 1136
Query 1150 ATGACATTACTCGGAACTGAAGAGTTTGTGCTTGAAGATGGTGAATATCTCACGGCCATA 1209
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1137 ATGACATTACTCGGAACTGAAGAGTTTGTGCTTGAAGATGGTGAATATCTAATGGCCATA 1196
Query 1210 GATGGCTATTACGATAAGATTTTCGGAGTCGAGACACCAATGATTATCTGTCTTCAGTTT 1269
||||| || ||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1197 GATGGTTACTACGATAAGATTTTCGGAGTCGAGACACCGATGATAATTTGTCTTCAGTTT 1256
Query 1270 AAGACGAACAAAAGGGAGTCAACTCCATTCGGAATGGATTCGGGTGAGAAGTTCTCGCTT 1329
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||| ||
Sbjct 1257 AAGACGAACAAAAGGGAGTCAACTCCGTTTGGAATGGATTCCGGTGAGAAGTTCTCACTC 1316
Query 1330 GGAGAGAAAGGCCACAAGATCGTCGGATTCCACGGACAAGCTAGTGATGTTGTTCACAGC 1389
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1317 GGAGAGATAGGCCACAAGATCGTCGGATGCCACGGACAAGCTAGTGATGTTGTTCACAGC 1376
Query 1390 ATCGGAGTCACTGTCGTGCCCATTACCAACA-CCAAGTGAAAAAC---CTTT-TATTATA 1444
|||||||||||||||||||| || |||| || ||||||||||||| | || |||||||
Sbjct 1377 ATCGGAGTCACTGTCGTGCCAATCACCA-CAACCAAGTGAAAAACGAACCTTCTATTATA 1435
Query 1445 TAAGTAAAACCAGCCAGTGCCATGTCGACTAAATGAAAACATTC-AATAAGGATTGGTGT 1503
| |||||||||||||| || ||||||||| |||| ||| | ||| |||||||||||||||
Sbjct 1436 TTAGTAAAACCAGCCACTGTCATGTCGACAAAAT-AAA-C-TTCCAATAAGGATTGGTGT 1492
Query 1504 GTTTACTCTACTACTTTTGATGTGTTTGTAACTTACTGTTTCTGTCAAATATGTCCAATA 1563
|||| | || | | ||| || |||| |||||||||||||||||| || ||||||
Sbjct 1493 GTTT--T-TA-T------G-TGT-TT-GTAAGTTACTGTTTCTGTCAAATGTGGCCAATA 1539
Query 1564 AGAATTGGTGTG--CTCTCTTCAACTATTCAATAAATCTACCATGAGCCGTGTCA 1616
||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1540 AGA-TTGGTGTGTGCTCTCTTCAACCATTCAATAAATCTACCATGAGCCGTGTCA 1593
> Ahg482950 jgi|Araly1|482950|fgenesh2_kg.4__2010__AT2G39310.1
Length=1585
Score = 1528 bits (827), Expect = 0.0
Identities = 1232/1425 (86%), Gaps = 38/1425 (3%)
Strand=Plus/Plus
Query 42 ATACAAAATGGCGAAAATCTACCGGAAGTTGACAGGCTACGGTGGTGAAGGAGG-GCGTG 100
|||| ||||||||| || |||||||||||| || || ||||||||||||||| | |
Sbjct 32 ATACGAAATGGCGAGGATGTACCGGAAGTTGGCACTCTGCGGTGGTGAAGGAGGAAAG-G 90
Query 101 AATGGGACGATGATGTATATGAGGGTG-TAAGAAAAGTGTATGTAGGACAAGATATCAAT 159
|||||||||| |||||||||||||||| | | ||||||||||||||| |||||| ||||
Sbjct 91 AATGGGACGACGATGTATATGAGGGTGTTCA-AAAAGTGTATGTAGGGCAAGATCTCAAC 149
Query 160 CGTATCACTTACGTCAAATTCGAGTATGTGAAGGAAGACGGCCAAGTCGTAACAACTGAA 219
|||||||||||| ||||||| ||||| ||||||||||||||| |||| ||||||||||||
Sbjct 150 CGTATCACTTACATCAAATTTGAGTACGTGAAGGAAGACGGCGAAGTAGTAACAACTGAA 209
Query 220 TATGGGAAAATCATTCAACAACCC-AAAGAGTTTGTACTTCAATATCCGGACGAACATAT 278
||||||| ||| | ||||| |||| |||||||||||||||||||| ||||||||||| ||
Sbjct 210 TATGGGACAATAAATCAAC-ACCCTAAAGAGTTTGTACTTCAATACCCGGACGAACACAT 268
Query 279 CATAGCGGTGGAAGGAAACTATCGCGGAGTGGCTCT-ATGTGCCACAGAGGTGATCACAA 337
|||||| |||| |||| ||| | | ||| ||||| || |||||| ||||| || ||
Sbjct 269 CATAGCAATGGAGGGAAGCTACCACCCAGTAGCTCTCAT-TGCCACGGAGGTAATTACGT 327
Query 338 ACCTCGTCTTCAAGACCTCAAAGGGTAGAAAG-TCACC-ACTGTTTGGTCCAAACTTGCT 395
|||||| |||||||||||||||||||| | | || || || ||||||||||||||| |
Sbjct 328 CCCTCGTGTTCAAGACCTCAAAGGGTAG-ATGCTCTCCAAC-GTTTGGTCCAAACTTATT 385
Query 396 TGGAATTACGACCGGTACAAAGTTCGTTATTGAGGATGGA-GGAAAGAAGATCGTAGGGT 454
||||||||||| |||||||||||| ||| ||||| || || |||||||||||||||||||
Sbjct 386 TGGAATTACGAGCGGTACAAAGTTTGTTTTTGAGAAT-GAGGGAAAGAAGATCGTAGGGT 444
Query 455 TTCATGGACGGTCGGGTAATGCTCTCGACGCGCTTGGAGTTTACTTTGTACATGGCTCTC 514
||||||||||| | ||| ||||||| ||||| |||||||||||||||||| ||| | |
Sbjct 445 TTCATGGACGGGCAGGTGATGCTCTTGACGCTCTTGGAGTTTACTTTGTA-TTGGAT-AC 502
Query 515 TAACAACGTCTCCGCCTGTTTACAAGCTGGATGCCCAAGGTGGTACAGACGGGCGTGTTT 574
|| ||| | | ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 503 -CACGCCGT-T-C-CCTCTTTACAAGCTGGATGCCCAAGGTGGAACAGACGGGCGTGTTT 558
Query 575 GGGATGATGGTTCTTACGACGGCGTTAAATCGCTGCGTATTGGTCAAGATAATTCTCGTA 634
|||||||||||||||| |||||| ||||| ||||||| |||||| |||||||||||||||
Sbjct 559 GGGATGATGGTTCTTATGACGGCCTTAAAACGCTGCGCATTGGTAAAGATAATTCTCGTA 618
Query 635 TTACTTATTTAGAGTTCGAGTACGAGAAAGG-CGGTAAGTTAGAGACATGTCGCCATGGG 693
| ||||||||||||| ||||||||||||||| || || | | |||||||| |||||||
Sbjct 619 TCACTTATTTAGAGTCCGAGTACGAGAAAGGTGGGGAA-TCAAAGACATGTAACCATGGG 677
Query 694 GTGAAACAAGAAAGATCA-CTGAAGTTTGAGC-T--TAACCCGGATGAATACATCAAATC 749
|||||| ||| | | || | | |||||| || | | | || || ||||||||||||||
Sbjct 678 GTGAAAGGAGATACACCATCCG-AGTTTGTGCTTGGTTATCCAGACGAATACATCAAATC 736
Query 750 GGTGGAAGCAACCTATGATAAACCGGACATTTTCCGCAATGTCGTCATTACATCGCTTAC 809
|||||||||||||||| | || || ||||||| ||||| ||||||||| || ||||
Sbjct 737 GGTGGAAGCAACCTATCAGAAGCCAAACATTTTTAGCAATACCGTCATTACGTCACTTA- 795
Query 810 A-TTTGAAACATCGAAGGGGAGAACGTCATTCTCTGGGTATAA-GGGAGGTAAGAAGTTT 867
| ||||| ||||| ||||||||||||||||||| ||||||||| | | ||||||||||||
Sbjct 796 AGTTTGAGACATCAAAGGGGAGAACGTCATTCTTTGGGTATAATGTG-GGTAAGAAGTTT 854
Query 868 AAGCTAGAGCAAAAGGGTCGTAGGCTTGTCGGGTTCCATGGAAAGGAAGGTTCAGCTATT 927
| | ||||||||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 855 GTGTTGGAGCAAAAGGGTCATAGGCTTGTCGGGTTCCATGGAAAGGAAGATGCAGCTATT 914
Query 928 GATGCCCTTGGAGCATATTTTGCACCTATTCCTACTCCGACT-CCTATAATTCCAGCCAA 986
||||| ||||||||||||||| |||| |||||||||| ||| ||| | |||||| ||||
Sbjct 915 GATGCTATTGGAGCATATTTTGGACCTGTTCCTACTCCTACTCCCT-TGATTCCATCCAA 973
Query 987 GAAACTACCAGCAATAGGCGGCAGCGGAGGAGTTGCATGGGATGATGGTGTCTACGATGG 1046
|||||||||||| |||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct 974 GAAACTACCAGCGATAGGCGGCAACGAAGGAGTTGCATGGGATGATGGTGTCTACGACGG 1033
Query 1047 TGTAAGGAAGATACTTGTAGGACAAGGTAACGATGGTGTAGCCTTTGTCAAGTTTGAATA 1106
||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1034 TGTGAGGAGGATACTTGTAGGACAAGGTAACGATGGTGTATCCTTTGTCAAGTTTGAGTA 1093
Query 1107 CAATAAAGGAAAAGATCTTGTATCTGGAGATGACCATGGGAAGATGACATTACTCGGAAC 1166
|| ||| || ||||| |||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1094 CAGTAAGGGCAAAGAACTTGTATCTGGAGATGACCATGGGAAGAAGACATTACTCGGAGC 1153
Query 1167 TGAAGAGTTTGTGCTTGAAGATGGTGAATATCTCACGGCCATAGATGGCTATTACGATAA 1226
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1154 TGAAGAGTTTGTGCTTGAAGATGGTGAATATCTCATAACCATAGATGGCTACTACGATAA 1213
Query 1227 GATTTTCGGAGTCGAG-ACACCAATGATTATCTGTCTTCAGTTTAAGACGAACAAAAGGG 1285
||| |||||||||| | | |||||| ||| ||||||||||||||||||| ||||||||||
Sbjct 1214 GATCTTCGGAGTCGGGGA-ACCAATAATTGTCTGTCTTCAGTTTAAGACCAACAAAAGGG 1272
Query 1286 AGTCAACT-CCATTCGGAATGGATTCGGGTGAGAAGTTCTCGCTTGGAGAGAAAGGCCAC 1344
|||||| | || || ||||||||||| ||| |||||||||||||||||||| | ||||||
Sbjct 1273 AGTCAA-TGCCGTTTGGAATGGATTCTGGTAAGAAGTTCTCGCTTGGAGAGGAGGGCCAC 1331
Query 1345 AAGATCGTCGGATTCCACGGACAAGCTAGTGATGTTGTTCACAGCATCGGAGTCACTGTC 1404
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1332 AAGATCGTTGGATTCCATGGACAAGCTAGTGATGTAGTTCACAGCATCGGAGTCACTATC 1391
Query 1405 GTGCCCATTACCAACACCAAGTGAAAAACCTTTTATTATATAAGT 1449
||||| || |||| |||| |||||||| |||| ||| |||| |||
Sbjct 1392 GTGCCTATCACCACCACCGAGTGAAAA-CCTTCTATCATATTAGT 1435
> Ahg485068 jgi|Araly1|485068|fgenesh2_kg.5__1060__AT2G39310.1
Length=1469
Score = 1044 bits (565), Expect = 0.0
Identities = 794/903 (88%), Gaps = 21/903 (2%)
Strand=Plus/Plus
Query 544 GATGCCCAAGGTGGTACAGACGGGCGTGTTTGGGATGATGGTTCTTACGACGGCGTTAAA 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GATGCCCAAGGTGGTACAGACGGGCGTGTTTGGGATGATGGTTCTTACGACGGCGTTAAA 545
Query 604 TCGCTGCGTATTGGTCAAGATAATTCTCGTATTACTTATTTAGAGTTCGAGTACGAGAAA 663
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 546 ACGCTGCGTATTGGTCAAGATAATTCTCGTATCACTTATTTAGAGTTCGAGTACGAGAAA 605
Query 664 GGCGGT-AAGTTAGAGACATGTCGCCATGGGGTGAAACAAGAAAGATCA-CTGAAGTTTG 721
|| || || | | |||||||| |||||||| |||| ||| | | || | || |||||
Sbjct 606 GGTGGGGAA-TCAAAGACATGTAACCATGGGGGGAAAGGAGATACACCATCCGA-GTTTG 663
Query 722 AGCTTA---ACCCGGATGAATACATCAAATCGGTGGAAGCAACCTATGATAAA-CCGGAC 777
|||| || | || |||||||||||||||||||||||||||||| | ||| || |
Sbjct 664 TGCTTGGTTACACAGACGAATACATCAAATCGGTGGAAGCAACCTATCA-AAAGCCAAAT 722
Query 778 ATTTTCCGCAATGTCGTCATTACATCGCTTACATTT-GAAACATCGAAGGGGAGAACGTC 836
||||| ||||| ||||||||| || |||| | || ||| |||| ||||||||||| ||
Sbjct 723 ATTTTTAGCAATACCGTCATTACGTCACTTA-AGTTCGAAGCATCAAAGGGGAGAACATC 781
Query 837 ATTCTCTGGGTATAAGG-GAGGTAAGAAGTTTAAGCTAGAGCAAAAGGGTCGTAGGCTTG 895
||||| ||||||||| | | |||||||||||| | | ||||||||||||| ||||||||
Sbjct 782 ATTCTTTGGGTATAATGTG-GGTAAGAAGTTTGTGTTGGAGCAAAAGGGTCATAGGCTTG 840
Query 896 TCGGGTTCCATGGAAAGGAAGGTTCAGCTATTGATGCCCTTGGAGCATATTTTGCACCTA 955
| |||||||| |||||||||| | ||||||||||||| |||||||||||||||| ||||
Sbjct 841 TTGGGTTCCACGGAAAGGAAGATGCAGCTATTGATGCTCTTGGAGCATATTTTGGACCTG 900
Query 956 TTCCTACTCCGACTCCTATAATTCCAGCCAAGAAACTACCAGCAATAGGCGGCAGCGGAG 1015
|||||||||| |||||| | |||||| ||||||||||||||||||||||||||| || ||
Sbjct 901 TTCCTACTCCTACTCCTTTGATTCCATCCAAGAAACTACCAGCAATAGGCGGCAACGAAG 960
Query 1016 GAGTTGCATGGGATGATGGTGTCTACGATGGTGTAAGGAAGATACTTGTAGGACAAGGTA 1075
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 961 GAGTTACATGGGATGATGGTGTCTACGACGGTGTAAGGAAGATACTTGTAGGACAAGGTA 1020
Query 1076 ACGATGGTGTAGCCTTTGTCAAGTTTGAATACAATAAAGGAAAAGATCTTGTATCTGGAG 1135
|||| |||||| |||||||||||||||| |||| ||| || ||||| |||||||| ||||
Sbjct 1021 ACGACGGTGTATCCTTTGTCAAGTTTGAGTACAGTAAGGGCAAAGAACTTGTATCCGGAG 1080
Query 1136 ATGACCATGGGAAG-ATGACATTACTCGGAACTGAAGAGTTTGTGCTTGAAGATGGTGAA 1194
|||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1081 ATGACCATGGGAAGGA-GACATTACTCGGAGCTGAAGAGTTTGTGCTTGAAGATGGTGAA 1139
Query 1195 TATCTCACGGCCATAGATGGCTATTACGATAAGAT-TTTCGGAGTCGAG-ACACCAATGA 1252
||||||| ||||||||||||| ||||||||||| ||| ||||||||| | ||||| |
Sbjct 1140 TATCTCATAACCATAGATGGCTACTACGATAAGATCTTT-GGAGTCGAGGA-ACCAACAA 1197
Query 1253 TTATCTGTCTTCAGTTTAAGACGAACAAAAGGGAGTCAACT-CCATTCGGAATGGATTCG 1311
|| ||||||||||||||||||| |||||||||||||||| | || || |||||||||||
Sbjct 1198 TTGTCTGTCTTCAGTTTAAGACCAACAAAAGGGAGTCAA-TGCCGTTTGGAATGGATTCT 1256
Query 1312 GGTGAGAAGTTCTCGCTTGGAGAGAAAGGCCACAAGATCGTCGGATTCCACGGACAAGCT 1371
||| |||||||||||||||||||| ||||||| |||||||| |||||||| |||||||||
Sbjct 1257 GGTAAGAAGTTCTCGCTTGGAGAGGAAGGCCATAAGATCGTTGGATTCCATGGACAAGCT 1316
Query 1372 AGTGATGTTGTTCACAGCATCGGAGTCACTGTCGTGCCCATTACCAACACCAAGTGAAAA 1431
|| ||||||||||||||||||||||||||| | |||||||| |||| |||| ||| ||||
Sbjct 1317 AGCGATGTTGTTCACAGCATCGGAGTCACTATTGTGCCCATCACCACCACCGAGTAAAAA 1376
Query 1432 ACC 1434
|||
Sbjct 1377 ACC 1379
Score = 442 bits (239), Expect = 4e-123
Identities = 385/454 (85%), Gaps = 16/454 (4%)
Strand=Plus/Plus
Query 47 AAATGGCGAA-AATCTACCGGAAGTTGACAGGCTACGGTGGTGAAGGAGG-GCGTGAATG 104
||||||| || || |||||||||||| || || ||||||||||||||| | |||||
Sbjct 37 AAATGGC-AAGGATGTACCGGAAGTTGGCACTCTGCGGTGGTGAAGGAGGAAAG-GAATG 94
Query 105 GGACGATGATGTATATGAGGGTGTAAGAAAAGTGTATGTAGGACAAGATATCAATCGTAT 164
|||||| ||||||||||||||||||| ||||||||||||||| |||||| |||| |||||
Sbjct 95 GGACGACGATGTATATGAGGGTGTAAAAAAAGTGTATGTAGGGCAAGATCTCAACCGTAT 154
Query 165 CACTTACGTCAAATTCGAGTATGTGAAGGAAGACGGCCAAGTCGTAACAACTGAATATGG 224
||||||| ||||||| ||||| |||||||||||| || |||| ||||||||| ||||||
Sbjct 155 CACTTACATCAAATTTGAGTACGTGAAGGAAGACAGCGAAGTAGTAACAACTTTATATGG 214
Query 225 GAAAATCATTCAACAACCC-AAAGAGTTTGTACTTCAATATCCGGACGAACATATCATAG 283
|| ||| | ||||| |||| ||||| |||||||||||||| || |||||||| |||| ||
Sbjct 215 GACAATAAATCAAC-ACCCTAAAGATTTTGTACTTCAATACCCAGACGAACACATCACAG 273
Query 284 CGGTGGAAGGAAACTATCGCGGAGTGGCTCT-ATGTGCCACAGAGGTGATCACAAACCTC 342
| ||||| |||| ||| | | ||||||||| || |||||| ||||| || || ||||
Sbjct 274 CAGTGGAGGGAAGCTACCACCCAGTGGCTCTAAT-TGCCACGGAGGTAATTACGTCCCTC 332
Query 343 GTCTTCAAGACCTCAAAGGGTAGAAAG-TCACCA-CTGTTTGGTCCAAACTTGCTT-GGA 399
|||||||||||||||||||||||| | || ||| | ||||||||||||||| || |||
Sbjct 333 GTCTTCAAGACCTCAAAGGGTAGAT-GCTCTCCAAC-GTTTGGTCCAAACTTA-TTCGGA 389
Query 400 ATTACGACCGGTACAAAGTTCGTTATTGAGGATGGAGG-AAAGAAGATCGTAGGGTTTCA 458
||||||| |||||||||||| ||| ||||||| | ||| |||||||||||||||||||||
Sbjct 390 ATTACGAGCGGTACAAAGTTTGTTTTTGAGGACG-AGGGAAAGAAGATCGTAGGGTTTCA 448
Query 459 TGGACGGTCGGGTAATGCTCTCGACGCGCTTGGA 492
||||||| | ||| ||||||||||||| ||||||
Sbjct 449 TGGACGGGCAGGTGATGCTCTCGACGCTCTTGGA 482
> Ahg937417 jgi|Araly1|937417|scaffold_501608.1
Length=604
Score = 390 bits (211), Expect = 1e-107
Identities = 255/276 (92%), Gaps = 4/276 (1%)
Strand=Plus/Plus
Query 1174 TTTGTGCTTGAAGATGGTGAATATCTCACGGCCATAGATGGCTAT-TACGATAAGATTTT 1232
|||||||||||||||||||||||||| || ||||||||||||| | ||||||||||||||
Sbjct 330 TTTGTGCTTGAAGATGGTGAATATCTAACAGCCATAGATGGCT-TCTACGATAAGATTTT 388
Query 1233 CGGAGTCGAGACACCAATGATTATCTGTCTTCAGTTTAAGACGAACAAAAGGGAGTCAAC 1292
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 389 CGGAGTCGAGACACCGATGATAATCTGTCTTCAGTTTAAGACGAATAAAAGGGAGTCAAC 448
Query 1293 TCCATTCGGAATGGATTCGGGTGAGAAGTTCTCGCTTGGAGAGAAAGGCCACAAGATCGT 1352
||| || |||||||| || |||||||||||||| | ||||||| |||||||||||||||
Sbjct 449 TCCGTTTGGAATGGACTCCGGTGAGAAGTTCTCAATCGGAGAGATAGGCCACAAGATCGT 508
Query 1353 CGGATTCCACGGACAAGCTAGTGATGTTGTTCACAGCATCGGAGTCACTGTCGTGCCCAT 1412
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 509 CGGATGCCACGGACAAGCTAGTGATGTTGTTCACAGCATCGGAGTCACTGTCGTGCCAAT 568
Query 1413 TACCAACA-CCAAGTGAAAAACCTTTTATTATATAA 1447
|||| || |||||||||||||||| ||||||||||
Sbjct 569 CACCA-CAACCAAGTGAAAAACCTTCTATTATATAA 603
Score = 296 bits (160), Expect = 3e-79
Identities = 186/199 (93%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 822 GAAGGGGAGAACGTCATTCTCTGGGTATAAGGGAGGTAAGAAGTTTAAGCTAGAGCAAAA 881
|||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 131 GAAGGGGAAAACATCATTCTCTGGATATAAGGGTGGTAAGAAGTTTAAGCTAGAGCAGAA 190
Query 882 GGGTCGTAGGCTTGTCGGGTTCCATGGAAAGGAAGGTTCAGCTATTGATGCCCTTGGAGC 941
|||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 191 GGGTCGCAAGCTTGTCGGGTTCCATGGAAAGGAAGGTTCAGCTATTGATGCTCTTGGAGC 250
Query 942 ATATTTTGCACCTATTCCTACTCCGACTCCTATAATTCCAGCCAAGAAACTACCAGCAAT 1001
|||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 251 ATATTTTGGACATATTCCTACTCCGACTCCTATAATTGCAGCCAAGAAACTACCAGCAAT 310
Query 1002 AGGCGGCAGCGGAGGAGTT 1020
||| |||| ||||||||||
Sbjct 311 AGGTGGCAACGGAGGAGTT 329
Score = 180 bits (97), Expect = 3e-44
Identities = 103/106 (97%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 612 TATTGGTCAAGATAATTCTCGTATTACTTATTTAGAGTTCGAGTACGAGAAAGGCGGTAA 671
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 29 TATTGGTCAAGATAATTCTCGTATAACTTATTTAGAGTTCGAGTACGAGAAAGGCGGTAA 88
Query 672 GTTAGAGACATGTCGCCATGGGGTGAAACAAGAAAGATCACTGAAG 717
|||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 89 GTTAGAGACACGTCACCATGGGGTGAAACAAGAAAGATCACTGAAG 134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60677760285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5