BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39400.1 Length=1194 Score E Sequences producing significant alignments: (Bits) Value Ahg482959 jgi|Araly1|482959|fgenesh2_kg.4__2019__AT2G39400.1 1705 0.0 Ahg485941 jgi|Araly1|485941|fgenesh2_kg.5__1933__AT3G55180.1 749 0.0 > Ahg482959 jgi|Araly1|482959|fgenesh2_kg.4__2019__AT2G39400.1 Length=1169 Score = 1705 bits (923), Expect = 0.0 Identities = 1055/1115 (95%), Gaps = 23/1115 (2%) Strand=Plus/Plus Query 1 AAATCAGACAACAACTAACTCTTTCCCTCTCGCTCTCCGCATAAATCCCTTTG-AAACAA 59 |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| Sbjct 1 AAATCAGACAACAACTAACTCTTTCCCTCTCGCTCTCCTCATAAATCCCTCTGAAAACAA 60 Query 60 GATCATATCTTAACTTTGTATAAAAACAGGACaaaaaaaCAGAGGATCATGGTTATGTAT 119 || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 GAAAATATCTTAACTTTGTATAAAAACAGAACAAAAAAACAGAGGATCATGGTTATGTAT 120 Query 120 GAAGAGGATTTTGTGTTGAACTCACGAGGCATGAAGTTGTTCACTTGTGTATGGAAACCA 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GAAGAGGATTTTGTGTTGAACTCACGAGGCATGAAGTTGTTCACTTGTGTATGGAAACCA 180 Query 180 GTGAAGCAAGAACCAAAGGCATTGCTCTTCCTCTGCCATGGCTACGCTATGGAGTCCAGC 239 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GTGAAGCAAGACCCAAAGGCATTGCTCTTCCTCTGCCATGGCTACGCTATGGAGTCCAGC 240 Query 240 ATCACCATG-A-A---CAG-C----G--CAGCCACGAGGTTAGCCAATGCCGGTTTTGCC 287 ||||||||| | | ||| | | ||||||||||| ||||||| ||||||||||| Sbjct 241 ATCACCATGAACAGTTCAGTCAGATGCACAGCCACGAGGCTAGCCAAGGCCGGTTTTGCG 300 Query 288 GTATATGGAATGGACTATGAAGGACATGGAAAATCTGAGGGTCTAAATGGTTACATCAGT 347 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 301 GTCTATGGAATGGACTATGAAGGACATGGAAAATCCGAGGGTCTAAATGGTTACATCAGT 360 Query 348 AACTTTGATGATCTCGTTGATGATGTCTCTAATCATTATTCTACAATTTGTGAGAGGGAA 407 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 361 AACTTTGATGATCTCGTTGATGATGTCTCTAATCATTATTCTACAATTTGTGAGAAGGAA 420 Query 408 GAGAACAAGGGGAAGATGAGGTTCCTACTTGGAGAATCCATGGGAGGAGCAGTTGTGTTG 467 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 421 GAGAACAAGGGGAAGATGAGGTTCCTACTCGGAGAATCCATGGGAGGAGCAGTTGTGTTG 480 Query 468 CTCTTAGCCAGAAAGAAGCCTGATTTTTGGGACGGTGCCGTTTTGGTAGCACCCATGTGT 527 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 481 CTCTTAGCCAGAAAGAAGCCTGATTTTTGGGACGGTGCCGTTTTGGTCGCACCCATGTGT 540 Query 528 AAGTTAGCAGACGAGATAAAGCCACATCCAGTAGTGATCTCAATCCTTA-TCAAGTTAGC 586 ||||||||||||||||||||||||||||||||||||||||||||||||| | || || || Sbjct 541 AAGTTAGCAGACGAGATAAAGCCACATCCAGTAGTGATCTCAATCCTTATTAAACTT-GC 599 Query 587 CAAGTTTATTCCAACGTGGAAAATAGTTCCAGGAAATGATATTATTGACATTGCAATTAA 646 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 CAAGTTTATTCCGACGTGGAAAATAGTTCCAGGAAATGATATTATTGACATTGCAATTAA 659 Query 647 AGAACCTCACATCAGAAATCAGGTGAGGGAGAACAAGTATTGCTATAAAGGCCGGCCTCG 706 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AGAACCTCACATCAGAAATCAGGTGAGGGAGAACAAGTATTGCTATAAAGGCCGGCCTCG 719 Query 707 CCTCAACACCGCCTACCAACTCTTGTTGGTTAGCTTAGATCTTGAGAAGAATCTTCACCA 766 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 720 CCTCAACACCGCCTACCAACTCTTGTTGGTTAGCTTAGATCTTGAGAAGAATCTTGACCA 779 Query 767 GGTATCAATTCCTTTCATTGTTCTTCACGGAGAAGATGATAAAGTGACGGATAAAAGCAT 826 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 780 GGTATCAATTCCTTTCATTGTTCTTCACGGAGAAGATGATAAAGTGACGGACAAAAGCAT 839 Query 827 AAGCAAAATGTTATACGAAGTGGCTTCAAGCTCGGACAAGACATTCAAGCTGTACCCCAA 886 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 840 AAGCAAAATGTTATACGAAGTGGCTTCAACCTCGGACAAGACATTCAAGTTGTACCCCAA 899 Query 887 AATGTGGCATGCTTTGTTGTATGGGGAAACTAATGAAAATTCAGAAATTGTGTTTGGTGA 946 |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||| Sbjct 900 AATGTGGCATGCGTTGTTATATGGAGAAACTTCTGAAAATTCAGAAATTGTGTTTGGTGA 959 Query 947 TATCATAAACTGGTTGGAAGATAGAGCCACAGATTCGAACGGAGGGTTAGAGAGTCAGCT 1006 ||||||||||||| |||| ||||||||||| ||||||||| ||| ||||||||||||||| Sbjct 960 TATCATAAACTGGCTGGAGGATAGAGCCACCGATTCGAACAGAGCGTTAGAGAGTCAGCT 1019 Query 1007 AAAACATAAGCATGATGGATTCTTGAAGCATAAATAAGTGAACGATAGCATTGTTTATGT 1066 ||||||||||||||||||||||||||||||||||||||||||||||| || || | | | Sbjct 1020 AAAACATAAGCATGATGGATTCTTGAAGCATAAATAAGTGAACGATA-CA--GTCTCT-T 1075 Query 1067 ACCCttttttttGCAGCGGTTTATGTACTTGTGTA 1101 |||||| ||||| |||| |||||||||||| Sbjct 1076 ----TTTTTTGGGCAGCCGTTTGTGTACTTGTGTA 1106 Score = 100 bits (54), Expect = 2e-20 Identities = 56/57 (98%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 1138 ATACTTTACCTACGAAGTTACTTGTGAAATAAGTAGTGAAGTATTTTATATTTACGG 1194 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1113 ATACTTTACCTACGAAGTTACTTGTGAAATAAGTAGTGAAGTATATTATATTTACGG 1169 > Ahg485941 jgi|Araly1|485941|fgenesh2_kg.5__1933__AT3G55180.1 Length=939 Score = 749 bits (405), Expect = 0.0 Identities = 720/870 (83%), Gaps = 29/870 (3%) Strand=Plus/Plus Query 108 ATGGTTATGTATGAAGAGGATTTTGTGTT-GAACTCACGAGGCA-TGAAGTTGTTCACTT 165 ||||||| ||| ||||||||| ||| || ||||||||||| | | || || ||||| | Sbjct 1 ATGGTTACGTACAAAGAGGATTATGT-TTCAAACTCACGAGGTATTCAACTT-TTCACGT 58 Query 166 GTGT-ATGGAAACCAG-TGA--AGCAAGAACCAAAGGCATTGCTCTTCCTCTGCCATGGC 221 || | ||||||||||| || |||||||||||||||| || |||| ||||| |||||| Sbjct 59 GT-TCATGGAAACCAGAGGAGCAGCAAGAACCAAAGGCTTTAATCTTTCTCTGTCATGGC 117 Query 222 TACGCTATGGAGTCCAGCATCACCATGAACAGCGCAGCCACGAGGTTAGCCAATGCCGGT 281 ||||| ||||| || ||||||||||||| |||| | || | |||||| || ||||| || Sbjct 118 TACGCCATGGAATCAAGCATCACCATGAGCAGCACTGCAATGAGGTTGGCTAATGCGGGC 177 Query 282 TTTGCCGTATATGGAATGGACTATGAAGGACATGGAAAATCTGAGGG-TCTAAATGGTTA 340 || || || |||||||||||||||||||| ||||| ||||| | ||| | |||||||||| Sbjct 178 TTCGCGGTCTATGGAATGGACTATGAAGGGCATGGTAAATCCGGGGGAT-TAAATGGTTA 236 Query 341 CATCAGTAACTTTGATGATCTCGTTGATGATGTCTCTAATCATTA-TTCTACAATTTGTG 399 | ||| || ||||||||||| ||| |||| |||| | |||||| | || ||||||||| Sbjct 237 CGTCAAAAAATTTGATGATCTTGTTCATGACGTCTATTCTCATTACTCCT-CAATTTGTG 295 Query 400 AGAGGGAAGAGAACAAGGGGAAGATGAGGTTCCTACTTGGAGAATCCATGGGAGGAGCAG 459 |||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||||| Sbjct 296 CGAGGGAAGAGAATAAGGGGAAGATGAGGTTTCTAATGGGAGAATCCATGGGAGGAGCAG 355 Query 460 TTGTGTTGCTCTTAGCCAGAAAGAAGCCTGATTTTTGGGACGGTGCCGTTTTGGTAGCAC 519 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 356 TTGTGTTGCTCTTAGAGAGAAAGAAGCCTGATTTTTGGGACGGTGCCGTTTTGGTCGCAC 415 Query 520 CCATGTGTAAGTTAGCAGACGAGATAAAGCCACATCCAGTAGTGATCTCAATCCTTATCA 579 ||||||||||||||||||| || ||||||||||||||| | ||||||||| | || | || Sbjct 416 CCATGTGTAAGTTAGCAGAAGACATAAAGCCACATCCAATGGTGATCTCATTTCTCA-CA 474 Query 580 A-GTTAGC-CAAGTTTATTCCAACGTGGAAAATAGTTCC-AGGAAATGATATTATTGACA 636 | | || | | |||||||||||| ||||| |||||||| || || ||||| |||||| Sbjct 475 AAGCTAACTCG-GTTTATTCCAACTTGGAAGATAGTTCCTAGCAAC-GATATCATTGACG 532 Query 637 TTGCAATTAAAGAA-CCTCACATCAGAAATCAGGTGAGGGAGAACAAGTATTGCTATAAA 695 | ||| |||||||| || ||||| ||||| ||||| ||||| || |||||||||| || Sbjct 533 TAGCATTTAAAGAATCC-CACATAAGAAAACAGGTAAGGGACAATGAGTATTGCTACAAG 591 Query 696 GGCCGGCCTCGCCTCAACACCGC-CTACCAACTCTTGTTGGTTAGCTTAGATCTTGAGAA 754 |||||||||||| | || ||||| | | |||||||| |||||||||| ||||||||||| Sbjct 592 GGCCGGCCTCGCTTGAAAACCGCTC-ATCAACTCTTACTGGTTAGCTTGGATCTTGAGAA 650 Query 755 GAATCTTCACCAGGTATCAATTCC-TTTCATTGTTCTTCACGGAGAAGATGATAAAGTGA 813 ||||||| | |||||||| || || ||| ||||| |||||||| |||||||||||||| | Sbjct 651 GAATCTTGATCAGGTATCGATGCCATTT-ATTGTCCTTCACGGTGAAGATGATAAAGTTA 709 Query 814 CGGATAAAAGCATAAGCAAAATGTTATACGAAGTGGCTTCAAGCTCGGACAAGACATTCA 873 | || |||| | |||||||| | ||||||| ||||||||||| ||||||||||| |||| Sbjct 710 CTGACAAAAACGTAAGCAAACTACTATACGAGGTGGCTTCAAGTTCGGACAAGACTTTCA 769 Query 874 AGCTGTACCCCAAAATGTGGCATG--CTTTGTTGTATGGGGAAACTAATGAAAATTCAGA 931 || | ||||| || |||||||||| |||| | || || ||| || ||| |||| || Sbjct 770 AGTTATACCCGAACATGTGGCATGGGCTTT-TA-TACGGAGAATCTCCTGAGAATTTGGA 827 Query 932 AATTGTGTTTGGTGATATCATAAACTGGTT 961 |||||||| |||||||||||| ||||| Sbjct 828 GATTGTGTTCAGTGATATCATAAGTTGGTT 857 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44565689973 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5