BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39450.1
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482966 jgi|Araly1|482966|fgenesh2_kg.4__2026__AT2G39450.1 2211 0.0
Ahg497437 jgi|Araly1|497437|fgenesh2_kg.463__5__AT2G39450.1 2204 0.0
Ahg932978 jgi|Araly1|932978|scaffold_400966.1 174 1e-42
> Ahg482966 jgi|Araly1|482966|fgenesh2_kg.4__2026__AT2G39450.1
Length=1336
Score = 2211 bits (1197), Expect = 0.0
Identities = 1269/1304 (97%), Gaps = 3/1304 (0%)
Strand=Plus/Plus
Query 76 CCGGAAAAATGGTTGAGCCAGCTAGTCCAGATTCCGACGAAGGGATCTCGCTGCTCGAGT 135
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 35 CCGGAAAAATGGTTGAGCCAGCTAGTCAAGATTCCGACGAAGGGATCTCGCTGCTCGAGT 94
Query 136 TTCACGGTAACGGTGACCGTTCCTGGCAGTTAAATTTCGATGATTTCCAGGTTTCACCGG 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 95 TTCACGGTAACGGTGACCGTTCCTGGCAGTTAAATTTCGATGATTTCCAGGTTTCACAGG 154
Query 196 AACACAAGGAGAAGAA-ATCTCCGAGTAAACTACACAACTGTCTTGGTTGTTTGGGTCCG 254
| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 155 AGCACAAGGAGAAGAAGA-CTCCGAGTAAACTACACAACTGTCTTGGTTGTTTGGGTCCG 213
Query 255 GAAGACAATGTGGCAGATTATTACCAGCAGCAAGTAGAGATGCTTGAGGGCTTTACTGAA 314
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 214 GAAGACAATGTGGCAGATTATTACCAGCAGCAAGTAGAGATGCTTGAGGGGTTTACTGAA 273
Query 315 ATGGATGAACTTGCAGAACGTGGCTTTGTTCCTGGAATGTCAAAGGAAGAGCAGGATAAT 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 ATGGATGAACTTGCAGAACGTGGCTTTGTTCCTGGAATGTCAAAGGAAGAGCAGGATAAT 333
Query 375 TTGGCTAAAAGCGAGACATTGGCGATTAGAATATCAAACATTGCAAACATGCTTCTTTTT 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 TTGGCTAAAAGCGAGACATTGGCGATTAGAATATCAAACATTGCAAACATGCTTCTTTTT 393
Query 435 GCTGCTAAAGTCTATGCTTCTGTCACTAGTGGCTCTTTAGCTATCATTGCCTCTACATTG 494
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 394 GCTGCTAAAGTCTATGCTTCTGTCACAAGTGGCTCTTTAGCAATCATTGCTTCTACATTG 453
Query 495 GACTCTCTTCTTGATCTTCTTTCTGGCTTCATCCTCTGGTTTACCGCCTTCTCCATGCAG 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GACTCTCTTCTTGATCTTCTTTCTGGCTTCATCCTCTGGTTTACCGCCTTCTCCATGCAG 513
Query 555 ACACCCAACCCGTATCAGTATCCCATTGGCAAGAAACGCATGCAACCACTGGGAATCCTA 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 ACACCCAACCCGTATCAGTATCCCATTGGCAAGAAACGCATGCAACCACTGGGAATCCTA 573
Query 615 GTCTTTGCATCAGTGATGGCAACACTTGGATTGCAGATTATCTTGGAATCTCTTCGCACA 674
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 GTCTTTGCATCAGTGATGGCAACACTTGGATTGCAGATTATCTTGGAATCTCTTCGCACC 633
Query 675 ATGTTATCCAGCCACAAGGAGTTCAACCTAACAAAAGAGCAAGAGAGTTGGGTAGTTGGG 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 ATGTTATCCAGCCACAAGGAGTTCAACCTAACAAAAGAGCAAGAGAGTTGGGTAGTTGGG 693
Query 735 ATCATGCTTTCTGTTACATTGGTCAAACTGCTTCTGGTTCTTTACTGCAGATCCTTCACT 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 ATCATGCTTTCTGTTACATTGGTCAAACTGCTTCTGGTTCTTTACTGCAGATCCTTCACT 753
Query 795 AACGAGATCGTTAAAGCTTATGCTCAAGATCATTTCTTCGACGTCATCACAAACATCATT 854
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 754 AACGAGATCGTTAAAGCTTATGCTCAAGATCACTTCTTCGACGTCATCACAAACATCATT 813
Query 855 GGACTCATTGCAGTAATCCTGGCCAATTACATTGATTATTGGATTGATCCAGTTGGAGCT 914
|||||||||||||||||||| ||||||||||| || ||||||||||||| |||||||||
Sbjct 814 GGACTCATTGCAGTAATCCTTGCCAATTACATCGACGATTGGATTGATCCCGTTGGAGCT 873
Query 915 ATCATTCTTGCATTATACACAATACGGACATGGTCAATGACGGTCTTGGAGAACGTTAAC 974
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 874 ATCATTCTTGCATTATACACGATACGGACATGGTCAATGACGGTATTGGAGAACGTGAAC 933
Query 975 TCTCTTGTTGGGAAATCAGCTAGACCAGAGTATCTGCAGAAACTAACTTACCTGTGTTGG 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TCTCTTGTTGGGAAATCAGCTAGACCAGAGTATCTGCAGAAACTAACTTACCTGTGTTGG 993
Query 1035 AACCACCATAAAGCCATTAGGCACATTGACACAGTGAGGGCATACACATTTGGCTCTCAT 1094
|||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 994 AACCACCATAAAGCAATTAGGCACATTGATACAGTCAGGGCTTACACGTTTGGCTCTCAT 1053
Query 1095 TATTTTGTGGAGGTTGATATTGTTCTCCCAGCTGACATGCCTCTGCAAGTGGCTCACGAC 1154
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1054 TATTTTGTGGAGGTTGACATTGTTCTCCCAGCTGACATGCCTCTGCAAGCGGCTCACGAC 1113
Query 1155 ATTGGAGAATCGCTGCAAGAGAAGCTCGAGCTACTAGAGGAGATCGAACGGGCTTTTGTG 1214
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1114 ATTGGAGAATCGCTGCAAGAGAAGCTCGAGCTGCTAGAGGAGATCGAACGGGCTTTTGTG 1173
Query 1215 CATCTTGATTATGAGTACACTCACAAACCTGAGCACGCTAGATCCCACTGTTAGCTGTTT 1274
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1174 CATCTTGATTATGAGTACACTCACAAACCCGAGCACGCTAGATCCCACCGTTAGCTGTTT 1233
Query 1275 ATCCTTTTTAAAGATCTCTACGTTTCTATATCTTTACAAATTAATCTTCACTGTATTGTT 1334
||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1234 CTCCTTTTCAA-GTTCTCTACGTTTCTAAATCTTTACAAATTAATCTTCACTGTATTGTT 1292
Query 1335 GTTTAGTAGACAATTGTGAGATAAAGGAATACCTTTGTAACTAT 1378
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1293 GTTTAGTAGACAATTGTGAGATAAAGGAGTACCTTTGTAACTAT 1336
> Ahg497437 jgi|Araly1|497437|fgenesh2_kg.463__5__AT2G39450.1
Length=1335
Score = 2204 bits (1193), Expect = 0.0
Identities = 1290/1337 (96%), Gaps = 6/1337 (0%)
Strand=Plus/Plus
Query 46 aaaaaaaaaaTACAAAGTCTCTCTCC---GCCGCCGGAAAAATGGTTGAGCCAGCTAGTC 102
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAAAATACAAAGTCTCTCTCCAAATCCGCCGGAAAAATGGTTGAGCCAGCTAGTC 60
Query 103 CAGATTCCGACGAAGGGATCTCGCTGCTCGAGTTTCACGGTAACGGTGACCGTTCCTGGC 162
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGATTCCGACGAAGGGATCTCGCTGCTCGAGTTTCACGGTAACGGTGACCGTTCCTGGC 120
Query 163 AGTTAAATTTCGATGATTTCCAGGTTTCACCGGAACACAAGGAGAAGAA-ATCTCCGAGT 221
|||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 121 AGTTAAATTTCGATGATTTCCAGGTTTCACCGGAGCACAAGGAGAAGAAGA-CTCCGAGT 179
Query 222 AAACTACACAACTGTCTTGGTTGTTTGGGTCCGGAAGACAATGTGGCAGATTATTACCAG 281
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 180 AAACTACACAACTGTCTGGGTTGTTTGGGTCCGGAAGACAATGTAGCAGACTATTACCAG 239
Query 282 CAGCAAGTAGAGATGCTTGAGGGCTTTACTGAAATGGATGAACTTGCAGAACGTGGCTTT 341
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 240 CAGCAAGTAGAGATGCTTGAGGGGTTTACTGAAATGGATGAACTTGCAGAACGCGGCTTT 299
Query 342 GTTCCTGGAATGTCAAAGGAAGAGCAGGATAATTTGGCTAAAAGCGAGACATTGGCGATT 401
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 GTTCCTGGAATGTCAAAGGAAGAGCAGGATAATTTGGCTAAAAGTGAGACATTGGCGATT 359
Query 402 AGAATATCAAACATTGCAAACATGCTTCTTTTTGCTGCTAAAGTCTATGCTTCTGTCACT 461
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 360 AGAATATCAAACATTGCAAACATGGTTCTTTTTGCTGCTAAAGTCTACGCTTCTGTCACA 419
Query 462 AGTGGCTCTTTAGCTATCATTGCCTCTACATTGGACTCTCTTCTTGATCTTCTTTCTGGC 521
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGTGGCTCTTTAGCAATCATTGCCTCTACATTGGACTCTCTTCTTGATCTTCTTTCTGGC 479
Query 522 TTCATCCTCTGGTTTACCGCCTTCTCCATGCAGACACCCAACCCGTATCAGTATCCCATT 581
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTCATTCTGTGGTTTACCGCCTTCTCCATGCAGACACCCAACCCGTATCAGTATCCCATT 539
Query 582 GGCAAGAAACGCATGCAACCACTGGGAATCCTAGTCTTTGCATCAGTGATGGCAACACTT 641
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 GGCAAGAAACGCATGCAACCACTGGGAATTCTAGTCTTTGCATCAGTGATGGCAACACTT 599
Query 642 GGATTGCAGATTATCTTGGAATCTCTTCGCACAATGTTATCCAGCCACAAGGAGTTCAAC 701
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 600 GGATTGCAGATTATCTTGGAATCTCTTCGCACGATGTTATCCAGCCACAAGGAGTTCAGC 659
Query 702 CTAACAAAAGAGCAAGAGAGTTGGGTAGTTGGGATCATGCTTTCTGTTACATTGGTCAAA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTAACAAAAGAGCAAGAGAGTTGGGTAGTTGGGATCATGCTTTCTGTTACATTGGTCAAA 719
Query 762 CTGCTTCTGGTTCTTTACTGCAGATCCTTCACTAACGAGATCGTTAAAGCTTATGCTCAA 821
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 720 CTGCTTCTGGTTCTTTACTGCAGATCCTTCACTAACGAGATTGTTAAAGCTTATGCTCAA 779
Query 822 GATCATTTCTTCGACGTCATCACAAACATCATTGGACTCATTGCAGTAATCCTGGCCAAT 881
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 780 GATCACTTCTTCGACGTCATCACAAACATCATCGGACTCATTGCAGTAATCCTCGCCAAT 839
Query 882 TACATTGATTATTGGATTGATCCAGTTGGAGCTATCATTCTTGCATTATACACAATACGG 941
||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 840 TACATCGACGATTGGATTGATCCAGTTGGAGCTATCATTCTTGCATTATACACGATACGG 899
Query 942 ACATGGTCAATGACGGTCTTGGAGAACGTTAACTCTCTTGTTGGGAAATCAGCTAGACCA 1001
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 900 ACATGGTCAATGACGGTATTGGAGAACGTGAACTCTCTTGTTGGGAAATCAGCTAGACCA 959
Query 1002 GAGTATCTGCAGAAACTAACTTACCTGTGTTGGAACCACCATAAAGCCATTAGGCACATT 1061
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 960 GAGTATCTGCAGAAACTAACTTACCTGTGTTGGAACCACCATAAAGCAATTAGGCACATT 1019
Query 1062 GACACAGTGAGGGCATACACATTTGGCTCTCATTATTTTGTGGAGGTTGATATTGTTCTC 1121
|| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1020 GATACAGTGAGGGCTTACACATTTGGCTCTCATTATTTTGTGGAGGTTGACATTGTTCTC 1079
Query 1122 CCAGCTGACATGCCTCTGCAAGTGGCTCACGACATTGGAGAATCGCTGCAAGAGAAGCTC 1181
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCAGCTGACATGCCTCTGCAAGCGGCTCACGACATTGGAGAATCGCTGCAAGAGAAGCTC 1139
Query 1182 GAGCTACTAGAGGAGATCGAACGGGCTTTTGTGCATCTTGATTATGAGTACACTCACAAA 1241
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAGCTGCTAGAGGAGATCGAACGGGCTTTTGTGCATCTTGATTATGAGTACACTCACAAA 1199
Query 1242 CCTGAGCACGCTAGATCCCACTGTTAGCTGTTTATCCTTTTTAAAGATCTCTACGTTTCT 1301
|| |||||||||||||||||| ||||||||||| ||||||| || | |||||||||||||
Sbjct 1200 CCCGAGCACGCTAGATCCCACCGTTAGCTGTTTCTCCTTTTCAA-GTTCTCTACGTTTCT 1258
Query 1302 ATATCTTTACAAATTAATCTTCACTGTATTGTTGTTTAGTAGACAATTGTGAGATAAAGG 1361
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAATCTTTACAAATTAATCTTCACTGTATTGTTGTTTAGTAGACAATTGTGAGATAAAGG 1318
Query 1362 AATACCTTTGTAACTAT 1378
| |||||||||||||||
Sbjct 1319 AGTACCTTTGTAACTAT 1335
> Ahg932978 jgi|Araly1|932978|scaffold_400966.1
Length=593
Score = 174 bits (94), Expect = 1e-42
Identities = 102/106 (96%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 249 GGTCCGGAAGACAATGTGGCAGATTATTACCAGCAGCAAGTAGAGATGCTTGAGGGCTTT 308
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 459 GGTCCGGAAGACAATGTGGCAGATTATTACCAGCAACAGGTAGAGATGCTTGAGGGCTTT 518
Query 309 ACTGAAATGGATGAACTTGCAGAACGTGGCTTTGTTCCTGGAATGT 354
||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 519 ACTGAAATGGAAGAACTTGCAGAACGTGGCTTTGTTCCTGGTATGT 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51656552535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5