BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39470.1 Length=1026 Score E Sequences producing significant alignments: (Bits) Value Ahg497434 jgi|Araly1|497434|fgenesh2_kg.463__2__AT2G39470.2 1149 0.0 Ahg482968 jgi|Araly1|482968|fgenesh2_kg.4__2028__AT2G39470.2 1147 0.0 > Ahg497434 jgi|Araly1|497434|fgenesh2_kg.463__2__AT2G39470.2 Length=1006 Score = 1149 bits (622), Expect = 0.0 Identities = 724/771 (94%), Gaps = 16/771 (2%) Strand=Plus/Plus Query 262 CTTACCAAAAAGGCAGCGGAAACAATTGGAAGAGAAGGCAAGCTCTTGTGGGAGTAGGAA 321 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 236 CTTACCAAAAAGGCAGCGGAAGCAATTGGAAGAGAAGGCAAGCTCTTGTGGGAGTAGGAA 295 Query 322 CTTTAGTGGCAACTTCAATTCCAGCAACTTTGCTTCTTGCTGAAGAGATACCAAAAAGCT 381 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 296 CCTTAGTGGCAACTTCAATTCCAGCAGCTTTGCTTCTTGCTGAAGAGATACCAAAAAGCT 355 Query 382 ACTCGCCTTTTGTGGATCGAGAAGACGGGTATTCTTACTATTACCCATCAGACTGGAGGG 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 ACTCGCCTTTTGTGGATCGAGAAGACGGGTATTCTTACTATTACCCATCAGACTGGAGGG 415 Query 442 AATTTGACTTCAGGGCACATGATTCAGCCTTCAAAGATAGATACTTGCAACTGCAGAATG 501 |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| Sbjct 416 AATTTGACTTCAGGGCGCATGATTCAGCCTTCAAAGACAGATATTTGCAACTGCAGAATG 475 Query 502 TGCGGGTCAGGTTCATACCAACGGAGAAAAACGACATCCATGAAGTAGGTCCTATGGAAG 561 | || ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 476 TTCGCGTCAGGTTCATACCAACTGAGAAAAACGACATCCGTGAAGTAGGTCCTATGGAAG 535 Query 562 AGGTGGTTTATGATCTAGTGAAGCATAAGTTTGCAGCACCAAACCAAGTAGCTACCATCT 621 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 536 AGGTGGTTTATGATCTAGTGAAGCATAAGTTTGCAGCACCAAACCAAGTAGCTACCATTT 595 Query 622 ACGATATGAAAGAGAGGGTGGAAGATGGAAAGAACTATTACACGTTTGAGTATGGACTAA 681 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 596 ACGATATGAAAGAGAGGGTGGAAGATGGAAGGAACTATTACACGTTTGAGTATGGACTTA 655 Query 682 GAACTCCTATCTATGCAACCACTTCCTTTGCAACAGTGGCAGTTGGAAACAACAGATACT 741 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 GAACTCCCATCTATGCAACCACTTCCTTTGCAACAGTGGCAGTTGGAAACAACAGATACT 715 Query 742 ACACTCTCATAGTTGGAGCAAATGAGAGAAGGTGGAGGAAAGTGAAAAAGCAGCTTCAAG 801 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 716 ACACACTCATAGTTGGAGCAAATGAGAGGAGGTGGAGGAAAGTGAAAAAGCAGCTTCAAG 775 Query 802 TTGTGGCCGACTCTTTGAAGATCCTTCAGATTTGACAAACACAAGAAACATCTT-A---- 856 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 776 TTGTGGCTGACTCTTTGAAGATCCTTGAGATTTGACAAACACAAGAAACATCTTTATGTT 835 Query 857 -CTCCTATATATCTTTCTCTCTCTGTGGTTACAAAACTGTCTGTAGATAACAATTTGATA 915 ||||||| |||||||||||||||||||||||| || ||| ||||||| ||||||||||| Sbjct 836 ACTCCTATCTATCTTTCTCTCTCTGTGGTTACATAATTGTATGTAGATGACAATTTGATA 895 Query 916 T-TTTC-ATATTCTCTATAACTCCAACGATGGTTT-TGGCATTGTG-------AGTTAGA 965 | |||| || ||||| | ||||||||||||| ||| |||||||||| |||| || Sbjct 896 TATTTCCATCTTCTCCACAACTCCAACGATGTTTTATGGCATTGTGGCTTGTGAGTTGGA 955 Query 966 TTCTGAGTTGGTTCAGTAATTCAATCAAACTTGCAAATAAAGTGGAAATAA 1016 ||||||||||||||||||||| |||||||||||||||||||||| | |||| Sbjct 956 TTCTGAGTTGGTTCAGTAATTGAATCAAACTTGCAAATAAAGTGCATATAA 1006 Score = 283 bits (153), Expect = 2e-75 Identities = 215/242 (89%), Gaps = 15/242 (6%) Strand=Plus/Plus Query 1 ATCCACATGTTGATGAATGGAGAAGTCCGAGAAATGACGAAAATCAGAAATTTCTTAT-C 59 ||||||||||| ||||||||||||| | |||||||||||||||||||||| |||||| | Sbjct 1 ATCCACATGTTAATGAATGGAGAAG-CAAAGAAATGACGAAAATCAGAAATGTCTTATCC 59 Query 60 -CACA-TAGAACACTAAGGCAATGTTCATTGA--TCATCAAAAGTCTTGTGAATTGTAGC 115 |||| ||||||||||||||||||||||||| || || |||||||||||||||||||| Sbjct 60 ACACACAAGAACACTAAGGCAATGTTCATTGATCTCGTCTAAAGTCTTGTGAATTGTAGC 119 Query 116 CACTAT-G--GCAGTCTCCTCACTCTCAATCCGCTGTGGTGGTTTCTCACCAACAATCTC 172 || ||| | |||||||| ||||||||||| |||| |||| | |||||||||||||||| Sbjct 120 CATTATGGCAGCAGTCTCGTCACTCTCAATACGCTATGGT-G--TCTCACCAACAATCTC 176 Query 173 CCACAAGACAGAAATTCTCTGTCCAAATCCATCACTCAAAGCTTGTTGTTTACTTTCATC 232 |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 177 CCACAAGACAGAGATTCTCTGTCCAAATCCATCACTCAAAGCTTGTT-T--ACTTTCATC 233 Query 233 CG 234 || Sbjct 234 CG 235 > Ahg482968 jgi|Araly1|482968|fgenesh2_kg.4__2028__AT2G39470.2 Length=1014 Score = 1147 bits (621), Expect = 0.0 Identities = 729/779 (94%), Gaps = 15/779 (2%) Strand=Plus/Plus Query 262 CTTACCAAAAAGGCAGCGGAAACAATTGGAAGAGAAGGCAAGCTCTTGTGGGAGTAGGAA 321 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 236 CTTACCAAAAAGGCAGCGGAAGCAATTGGAAGAGAAGGCAAGCTCTTGTGGGAGTAGGAA 295 Query 322 CTTTAGTGGCAACTTCAATTCCAGCAACTTTGCTTCTTGCTGAAGAGATACCAAAAAGCT 381 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 296 CCTTAGTGGCAACTTCAATTCCAGCAGCTTTGCTTCTTGCTGAAGAGATACCAAAAAGCT 355 Query 382 ACTCGCCTTTTGTGGATCGAGAAGACGGGTATTCTTACTATTACCCATCAGACTGGAGGG 441 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 356 ACTCGCCTTTTGTGGATCGAGAAGACGGGTATTCTTATTATTACCCATCAGACTGGAGGG 415 Query 442 AATTTGACTTCAGGGCACATGATTCAGCCTTCAAAGATAGATACTTGCAACTGCAGAATG 501 |||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||| Sbjct 416 AATTTGACTTCAGGGCGCACGATTCAGCCTTCAAAGATAGATACCTGCAACTGCAGAATG 475 Query 502 TGCGGGTCAGGTTCATACCAACGGAGAAAAACGACATCCATGAAGTAGGTCCTATGGAAG 561 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 476 TGCGGGTCAGGTTCATACCAACCGAGAAAAACGACATCCGTGAAGTAGGTCCTATGGAAG 535 Query 562 AGGTGGTTTATGATCTAGTGAAGCATAAGTTTGCAGCACCAAACCAAGTAGCTACCATCT 621 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 536 AGGTGGTTTATGATCTAGTGAAGCATAAGTTTGCAGCACCAAACCAAGTAGCTACTATCT 595 Query 622 ACGATATGAAAGAGAGGGTGGAAGATGGAAAGAACTATTACACGTTTGAGTATGGACTAA 681 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 596 ACGATATGAAAGAGAGGGTGGAAGATGGAAGGAACTATTACACGTTTGAGTATGGACTAA 655 Query 682 GAACTCCTATCTATGCAACCACTTCCTTTGCAACAGTGGCAGTTGGAAACAACAGATACT 741 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 GAACTCCCATCTATGCAACCACTTCCTTTGCAACAGTGGCAGTTGGAAACAACAGATACT 715 Query 742 ACACTCTCATAGTTGGAGCAAATGAGAGAAGGTGGAGGAAAGTGAAAAAGCAGCTTCAAG 801 | || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 716 ATACACTCATAGTTGGAGCAAATGAGAGGAGGTGGAGGAAAGTGAAAAAGCAACTTCAAG 775 Query 802 TTGTGGCCGACTCTTTGAAGATCCTTCAGATTTGACAAACACAAGAAACATCTT-A---- 856 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 776 TTGTGGCTGACTCTTTGAAGATCCTTGAGATTTGACAAACACAAGAAACATCTTTATGTT 835 Query 857 -CTCCTATATATCTTTCTCTCTCTGTGGTTACAAAACTGTCTGTAGATAACAATTTGATA 915 ||||||| |||||||||||||||||||||||| || ||| ||||||| |||||||||| Sbjct 836 ACTCCTATCTATCTTTCTCTCTCTGTGGTTACATAATTGTATGTAGATGACAATTTGATG 895 Query 916 TTTTC--ATATTCTCTATAACTCCAACGATGGTTTTGGCATTGTG-------AGTTAGAT 966 | ||| || ||||| | ||||||||||||| ||||||||||||| |||| ||| Sbjct 896 TATTCCCATCTTCTCCACAACTCCAACGATGTTTTTGGCATTGTGGCTTGTGAGTTGGAT 955 Query 967 TCTGAGTTGGTTCAGTAATTCAATCAAACTTGCAAATAAAGTGGAAATAATGTATTTAC 1025 | |||| ||||||||||||| |||||||||||||||||||||| | ||||||||||||| Sbjct 956 TTTGAGCTGGTTCAGTAATTGAATCAAACTTGCAAATAAAGTGCATATAATGTATTTAC 1014 Score = 283 bits (153), Expect = 2e-75 Identities = 215/242 (89%), Gaps = 15/242 (6%) Strand=Plus/Plus Query 1 ATCCACATGTTGATGAATGGAGAAGTCCGAGAAATGACGAAAATCAGAAATTTCTTAT-C 59 ||||||||||| ||||||||||||| | |||||||||||||||||||||| |||||| | Sbjct 1 ATCCACATGTTAATGAATGGAGAAG-CAAAGAAATGACGAAAATCAGAAATGTCTTATCC 59 Query 60 -CACA-TAGAACACTAAGGCAATGTTCATTGA--TCATCAAAAGTCTTGTGAATTGTAGC 115 |||| ||||||||||||||||||||||||| || || |||||||||||||||||||| Sbjct 60 ACACACAAGAACACTAAGGCAATGTTCATTGATCTCGTCTAAAGTCTTGTGAATTGTAGC 119 Query 116 CACTAT-G--GCAGTCTCCTCACTCTCAATCCGCTGTGGTGGTTTCTCACCAACAATCTC 172 || ||| | |||||||| ||||||||||| |||| |||| | |||||||||||||||| Sbjct 120 CATTATGGCAGCAGTCTCGTCACTCTCAATACGCTATGGT-G--TCTCACCAACAATCTC 176 Query 173 CCACAAGACAGAAATTCTCTGTCCAAATCCATCACTCAAAGCTTGTTGTTTACTTTCATC 232 |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 177 CCACAAGACAGAGATTCTCTGTCCAAATCCATCACTCAAAGCTTGTT-T--ACTTTCATC 233 Query 233 CG 234 || Sbjct 234 CG 235 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38161039917 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5