BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39530.1
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934718 jgi|Araly1|934718|scaffold_402706.1 797 0.0
> Ahg934718 jgi|Araly1|934718|scaffold_402706.1
Length=579
Score = 797 bits (431), Expect = 0.0
Identities = 531/580 (92%), Gaps = 4/580 (1%)
Strand=Plus/Plus
Query 51 TAATTAACGGGAAGATTTATATGGCTCCACCACCTCCGGCACCACCGTCCGTTACGTTGA 110
|||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1 TAATTAACGGGAAGATCTATATGGCTCCACCACCTCCGTCACCGCCGTCCGTTACGTTGA 60
Query 111 GGACAGTGCTCCTTCTCCTTAGGGTTTTGACCGCGGCTTTCCTCCTCATAACGGTGGTCC 170
||||||| ||||| ||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct 61 GGACAGTACTCCTCCTCCTTAGGGTTTTGACGGCTGCTTTCCTCGTCATAACGGTGGTCC 120
Query 171 TCATCAGCACCAACACCGTCACTCTCGAAATTTCAAGCACGTCTATCAAATTGCCTTTCA 230
||||||||||||||||||||||||||||| | |||||||| ||||| ||| ||| ||| |
Sbjct 121 TCATCAGCACCAACACCGTCACTCTCGAAGTCTCAAGCACATCTATAAAAATGCATTTTA 180
Query 231 ACGATGTCTATGCTTATAGATACATGCTGTCCGCTGCCGTCATCGGACTAGTTTACGCCG 290
||||||||||||||||||| |||||| |||||||||||| ||||||||| |||||||||
Sbjct 181 ACGATGTCTATGCTTATAGGTACATGATGTCCGCTGCCGCCATCGGACTCCTTTACGCCG 240
Query 291 TTGTACAACTGTTCTTAACAATCTCCCAATTTGCCACCGGAAAA-ACACATCCTCTTACT 349
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |
Sbjct 241 TTGTACAACTGTTCTTAACAATCTCCCAATTCGCCAC-GGAAATTACACATCCTCTTAGT 299
Query 350 TATCAGTTCGATTTCTACGGTGATAAGGTAATATCATATTTACTTGCAACGGGTTCGGCG 409
||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct 300 TATCAGTTCAATTTCTACGGTGATAAGATAATATCATATATACTTGCGACGGGTTCGGCG 359
Query 410 GCAGGATTTGGAGTGAGCAAAGATTTGAAAGACACATACATAGCATTAATAGAATTTGAT 469
|| |||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||
Sbjct 360 GCTGGATTTGGAGTGAGCAAAGATTTGAAAGACACATACCTAGCATTGATAGAACTTGAT 419
Query 470 TCGACTGATCCAGTGGATAAGTTCTTTAGTAAAGGATATGCATCGGCCAGTCTTCTTCTC 529
|| || ||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct 420 TCAACAGATCCGGTGGATAGGTTCTTCAGTAAAGGATACGCATCGGCCAGTCTTCTTCTC 479
Query 530 TTCGCATTCGTCTCTCTTGCCGTTTTATCCGTTTTCTCATCCCTTGCTCTTTCCAAACGA 589
|| || ||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTTGCTTTCATCTCTCTTGCGGTTTTATCCGTTTTCTCATCCCTTGCTCTTTCCAAACGA 539
Query 590 CCAGTTCCAGTCTCATAAACACACATAT--GATCATTGTA 627
||| ||| ||||||||||| |||||||| ||||| ||||
Sbjct 540 CCAATTCAAGTCTCATAAATACACATATATGATCACTGTA 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28782802335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5