BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39660.1 Length=1773 Score E Sequences producing significant alignments: (Bits) Value Ahg482986 jgi|Araly1|482986|fgenesh2_kg.4__2046__AT2G39660.1 2612 0.0 Ahg485972 jgi|Araly1|485972|fgenesh2_kg.5__1964__AT3G55450.1 736 0.0 > Ahg482986 jgi|Araly1|482986|fgenesh2_kg.4__2046__AT2G39660.1 Length=1767 Score = 2612 bits (1414), Expect = 0.0 Identities = 1669/1787 (93%), Gaps = 37/1787 (2%) Strand=Plus/Plus Query 1 CTTCTCCTTCTTCTAGTCACCCCTCGTGCCTCTCTTTAACACCAAACCC-AAA-Actccc 58 ||||| |||||||| ||||||||||||||||||| |||||||||||||| ||| ||| || Sbjct 1 CTTCTTCTTCTTCTGGTCACCCCTCGTGCCTCTCATTAACACCAAACCCAAAACACTTCC 60 Query 59 ttctctttcttccttcctctccgatctccgttcacatctctctctcatcttta--t-ctt 115 |||||||||||| |||| ||| |||||| ||||||| ||||||||||||| | ||| Sbjct 61 TTCTCTTTCTTCTTTCCGCTCTGATCTCTGTTCACA----TCTCTCATCTTTATCTCCTT 116 Query 116 cttctttttttGCCTTGTGGGTTGAAAGTTTCTATATTTTCTCTTTCTCTTCTGTTTACA 175 || |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| Sbjct 117 TTTTTTTTTTTGCCTTGTGGGTCCAAAGTTTCTATATTTCCTCTTTCTGTTCTGTTTACA 176 Query 176 TAATCCATTTTCAGCTCAAGCAGCTGAAGAATAACGATCAAGAACCAAAAAAGAAGAAAA 235 |||||||| |||||||||||||||||||||| |||||||||||||| ||| | ||||||| Sbjct 177 TAATCCATATTCAGCTCAAGCAGCTGAAGAAGAACGATCAAGAACC-AAATATAAGAAAA 235 Query 236 CGAATCTGTTCTTAGCTTTGATGGGTTCTTGCTTCAGTTCTCGAGTCAAAGCAGACATCT 295 |||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| Sbjct 236 CGAATCTGTTCTTAGC--TGATGGGTTCCTGCTTCAGTTCTCGAGTCAAAGCCGACATCT 293 Query 296 TCCACAATGGTAAGAGCAGCGATCTTTATGGTCTAAGTCTCTCAAGTCGGAAATCGTCTT 355 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | Sbjct 294 TCCACAATGGTAAGAGCAGCGATCTTTACGGTCTAAGTCTCTCCAGTCGGAAATCGTCGT 353 Query 356 CGACTGTAGCGGCGGCTCAGAAGACGGAAGGGGAGATATTGAGTTCGACCCCTGTCAAAA 415 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 354 CAACTGTAGCGGCGGCTCAGAAGACGGAAGGGGAGATATTGAGTTCGACCCCCGTCAAAA 413 Query 416 GCTTCACCTTTAACGAACTCAAACTCGCCACAAGAAACTTCAGACCAGATAGTGTGATCG 475 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 414 GCTTCACCTTTAACGAACTCAAACTCGCCACCAGAAACTTCAGACCAGATAGTGTGATCG 473 Query 476 GAGAAGGTGGCTTTGGTTGTGTCTTTAAAGGCTGGTTAGATGAGTCCACTCTCACTCCGA 535 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 474 GAGAAGGTGGCTTTGGTTGTGTCTTTAAAGGCTGGTTAGATGAGACCACTCTCACTCCGA 533 Query 536 CTAAACCTGGAACCGGTTTGGTCATCGCCGTTAAAAAGCTTAACCAAGAAGGTTTTCAAG 595 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 534 CTAAACCTGGAACCGGTTTGGTTATCGCCGTTAAAAAGCTTAACCAAGAAGGTTTTCAAG 593 Query 596 GTCACCGTGAATGGCTGACAGAGATCAATTACTTGGGGCAACTGAGTCACCCAAATCTAG 655 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 594 GTCACCGTGAATGGCTGACAGAGATCAATTACTTGGGGCAATTGAGTCACCCAAATCTAG 653 Query 656 TTAAACTGATCGGTTATTGCTTAGAAGATGAACACCGTCTTCTAGTCTACGAGTTTATGC 715 | ||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 654 TCAAACTAATCGGGTATTGCTTAGAGGATGAACACCGTCTTCTTGTCTACGAGTTTATGC 713 Query 716 AAAAAGGAAGTCTTGAGAATCATCTATTCAGAAGAGGTGCATATTTTAAGCCACTCCCAT 775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 714 AAAAAGGAAGTCTTGAGAATCATCTATTCAGAAGAGGTGCATATTTTAAGCCACTCCCAT 773 Query 776 GGTTTCTACGGGTCAATGTTGCGCTTGATGCAGCAAAGGGGCTTGCTTTTCTTCACAGCG 835 ||||| ||||| || | ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 774 GGTTTTTACGGATCCAGGTTGCGCTTGATGCAGCAAAGGGTCTTGCTTTTCTTCACAGCG 833 Query 836 ATCCCGTCAAAGTGATATACCGAGACATTAAAGCCTCGAACATCTTACTTGATGCGGACT 895 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 834 ATCCCGTCAAAGTGATATACCGAGACATTAAAGCCTCGAACATCTTACTTGATTCGGACT 893 Query 896 ACAACGCAAAACTTTCTGACTTTGGACTAGCTAGAGACGGTCCAATGGGTGATTTGAGTT 955 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 894 ACAACGCAAAACTTTCTGACTTTGGACTAGCTAGGGACGGTCCAATGGGTGATTTGAGCT 953 Query 956 ATGTTAGTACAAGGGTCATGGGTACTTATGGGTACGCCGCGCCTGAGTACATGTCATCAG 1015 ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| Sbjct 954 ATGTTAGTACAAGGGTCATGGGTACATATGGCTACGCCGCACCTGAGTACATGTCATCAG 1013 Query 1016 GTCACTTGAATGCAAGAAGCGATGTGTACAGTTTCGGAGTTTTGCTTCTAGAGATTTTAT 1075 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1014 GTCACTTGAATGCAAGAAGCGATGTGTACAGTTTCGGAGTATTGCTTCTAGAGATTTTAT 1073 Query 1076 CTGGTAAGCGAGCGTTGGATCATAACAGACCGGCTAAAGAAGAAAACCTTGTGGATTGGG 1135 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1074 CAGGTAAGCGAGCGTTGGATCATAACAGGCCGGCTAAAGAAGAAAACCTTGTGGATTGGG 1133 Query 1136 CTCGACCGTACCTCACAAGCAAACGTAAGGTTCTCCTAATCGTGGACAATCGGCTAGACA 1195 ||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 1134 CTCGACCATACCTCACAAGCAAACGCAAGGTTCTCCTAATCGTGGACACTCGGCTAGACA 1193 Query 1196 CACAGTACCTACCTGAAGAAGCCGTGAGAATGGCAAGCGTGGCGGTGCAGTGTCTCTCAT 1255 |||||||| |||||||||||||||||||| |||| ||| | |||||||| |||||||||| Sbjct 1194 CACAGTACTTACCTGAAGAAGCCGTGAGAGTGGCCAGCATTGCGGTGCAATGTCTCTCAT 1253 Query 1256 TTGAACCCAAGTCGCGCCCGACCATGGACCAAGTGGTCCGTGCCTTACAACAACTTCAGG 1315 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1254 TCGAACCCAAGTCGCGCCCGACCATGGACCAAGTGGTCCGTGCCTTGCAACAACTTCAGG 1313 Query 1316 ACAACTTGGGAAAACCGAGTCAGACCAATCCGGTTAAGGATACCAAGAAACTTGGTTTTA 1375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1314 ACAACTTGGGAAAACCGAGTCAGACCAATCCGGTTAAGGATACCAAGAAACTTGGTTTTA 1373 Query 1376 AAACTGGTACTACTAAGTCATCCGAAAAACGGTTTACACAAAAACCTTTTGGCAGGCACC 1435 |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1374 AAACTGGTACTA--A-GTCATCCGAAAAACGGTTTACACAAAAACCTTTTGGCAGGCACC 1430 Query 1436 TTGTGTAGGTCAAGTTGATAACTGAATTCCAGGATGGACATTTTTCCGGCG-GTTTACTT 1494 |||||||||||||| || ||| ||| ||||||||||| ||||||| ||||| || |||| Sbjct 1431 TTGTGTAGGTCAAGCTGGTAATTGAGTTCCAGGATGGGCATTTTTTCGGCGAGT--ACTT 1488 Query 1495 GAAACTGCCGATATCCGTTTTCGACGGATTGAATGCGGTTCTGGACAAACCGTGCAGGTC 1554 |||||||| || |||||||||| |||||||| | | | |||||||||||||||||| Sbjct 1489 GAAACTGCGGAGATCCGTTTTCCACGGATTG--T----T-CAGGACAAACCGTGCAGGTC 1541 Query 1555 AAGACTAATAAAGGATACATTAAATTTTCCGGTTACATGTCCCATACCCA-A-CCTTAGA 1612 ||||| |||| |||||| | |||| |||||||||||||||||||||||| | ||||||| Sbjct 1542 GAGACTGATAATGGATACGTCAAATATTCCGGTTACATGTCCCATACCCACAACCTTAGA 1601 Query 1613 GAACATGTGTAGCCTTTAGCTTAGGCTTCCTTGTGTGCTGTTATATTGAGT-A--TATAT 1669 |||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||| Sbjct 1602 GAACATGTTTAGCCTTTAGGTTAGGCTTCCTTGTGTGCTGTTATATTGAGTGAAGTATAT 1661 Query 1670 ----GAGGTAATTTTTGCCTCTTGTGTTGTAACACT-T-GTATTTTTGTTCCTTTAACAT 1723 |||||| ||||| |||||| |||||||||||| | ||||||||||||||||||||| Sbjct 1662 AACTGAGGTATTTTTTACCTCTTCTGTTGTAACACTCTTGTATTTTTGTTCCTTTAACAT 1721 Query 1724 TTGATGTAGAGATTTTTCCTATATCTTCAGTTTTGAAACCCAAATTT 1770 |||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 1722 TTGATGTAGAGATTTT-CCTATATCTTCAGTTTTGAAATCCAAATTT 1767 > Ahg485972 jgi|Araly1|485972|fgenesh2_kg.5__1964__AT3G55450.1 Length=1584 Score = 736 bits (398), Expect = 0.0 Identities = 798/988 (81%), Gaps = 39/988 (4%) Strand=Plus/Plus Query 370 GCTCAGAAGACGGAAGGGGAGA-TATTGAGTTCGAC-CCCTGTCAAAAGCTTCACCTTTA 427 ||||| ||||| ||||| |||| | || || || || | || |||| ||| | ||||| Sbjct 281 GCTCACAAGACAGAAGGAGAGATTCTT-AGCTCAACGAGC-GTTAAAAACTTTAGCTTTA 338 Query 428 ACGAACTCAAACTCGCCACAAGAAACTTCAGACCAGA-TAGTG-TGATCGGAGAAGGTGG 485 | ||||| ||||| || || |||||||||||| | || | || || | ||||||||||| Sbjct 339 ATGAACTTAAACTAGCAACCAGAAACTTCAGATCGGACT-CTGTTG-TTGGAGAAGGTGG 396 Query 486 CTTTGGTTGTGTCTTTAAAGGCTGG-TTAGATGAGTCCACTCTCACTCCGACTAAACCTG 544 ||||||||||||||||| ||| ||| || |||||| | ||||| ||||| || ||| || Sbjct 397 CTTTGGTTGTGTCTTTAGAGGTTGGCTT-GATGAGACTACTCTTACTCCTACCAAATCTA 455 Query 545 GAACCGGT-TTGGTCATCGCCGTTAAAA-AGCTTAACCAAGAAGGTTTTCAAGGTCACCG 602 | | ||| ||| | || || |||||| | ||||||| || ||||||||||||||||| Sbjct 456 GCTCTGGTCTTG-TAATTGCTGTTAAACGA-CTTAACCCTGATGGTTTTCAAGGTCACCG 513 Query 603 TGAATGGCTGACAGAGATCAATTACTTGGGGCAACTGAGTCACCCAAATCTAGTTAAACT 662 |||||||||||| |||||||| ||||||||||| | |||||||| ||| | |||||| | Sbjct 514 TGAATGGCTGACGGAGATCAACTACTTGGGGCAGTTAAGTCACCCGAATTTGGTTAAATT 573 Query 663 GATCGGTTATTGCTTAGAAGATGAACACCGTCTTCTAGTCTACGAGTTTATGCAAAAAGG 722 ||| ||||||||||| ||||||||||| || ||||| || || ||||||||||| || || Sbjct 574 GATTGGTTATTGCTTGGAAGATGAACAACGGCTTCTGGTGTATGAGTTTATGCACAAGGG 633 Query 723 AAGTCTTGAGAATCATCTATT--CAGAA-G-AGGT-GCATATTTTAAGCCACTCCCATGG 777 ||||||||||||||||| || || || | | | | |||||||||| ||| | ||| Sbjct 634 TAGTCTTGAGAATCATCTGTTTGCA-AATGGAAATCGGG-ATTTTAAGCCGCTCTCTTGG 691 Query 778 TTTCTACGGGTCAATGTTGCGCTTGATGCAGC-AAAGGGGCTTGCTTTTCTTCACAGCGA 836 |||||||| | || ||||| ||||||||||| ||||| ||||| |||||||| ||||| Sbjct 692 ATTCTACGGATTAAGGTTGCACTTGATGCAGCTAAAGGT-CTTGCATTTCTTCATAGCGA 750 Query 837 TCCCGTCAAAGTGATATACCGAGACATTAAAGCCTCGAACATCTTACTTGA-TGCGGACT 895 |||||||||||| ||||||||||||||||| || || |||||||| || || | |||||| Sbjct 751 TCCCGTCAAAGTCATATACCGAGACATTAAGGCGTCAAACATCTTGCTGGACT-CGGACT 809 Query 896 ACAACGCAAAACTTTCTGACTTTGGACTAGCTAGAGACGGTCCAATGGGTGATTTGAGTT 955 |||||| || ||||| |||||||| |||| || |||||||||||||| || || | Sbjct 810 TCAACGCTAAGCTTTCAGACTTTGGGTTAGCGAGGGACGGTCCAATGGGAGAGACAAGCT 869 Query 956 ATGTTAGTACAAGGGTCATGGGTAC-TTATGGGTACGCCGCGCCTGAGTACATGTCATCA 1014 ||||||| ||||||||||||||||| || ||| ||||| || ||||||||| | ||| || Sbjct 870 ATGTTAGCACAAGGGTCATGGGTACATT-TGGCTACGCTGCTCCTGAGTACGTCTCAACA 928 Query 1015 GGTCACTTGAATGCAAGAAGCGATGTGTACAGTTTCGGAGTT-TTGCTTCTAGAGATTT- 1072 |||||||||||||| |||||||| |||||||||||||| || || || ||||| ||| Sbjct 929 GGTCACTTGAATGCTAGAAGCGACGTGTACAGTTTCGGGGTGGTT-CTGCTAGA-ATTAC 986 Query 1073 TATCTGGTAAG-CGAGCGTTGGATCATAACAGACCGGCTAAAGAAG-AAAACCTTGTGGA 1130 ||| ||| ||| | ||| |||| |||||| | ||||| || || | ||||||||||||| Sbjct 987 TATGTGG-AAGGCAAGCACTGGACCATAACCGCCCGGCCAAGGA-GCAAAACCTTGTGGA 1044 Query 1131 TTGGGCTCGACCGTACCTCACAAGCAAACGTAAGGTTCTCCTAATCGTGGACAATCGGCT 1190 |||||||||||| ||||||||||||| || |||||||| ||||| ||||||| |||||| Sbjct 1045 TTGGGCTCGACCATACCTCACAAGCAGGCGAAAGGTTCTACTAATTGTGGACACTCGGCT 1104 Query 1191 -AGACACACAGTACCTACCTGAAGAAGCCGTGAGAATGGCAAGCGTGGCGGTGCAGTGTC 1249 | || | |||||| ||| |||| || |||||| |||||||| | || |||||||| | Sbjct 1105 TA-ACTCTCAGTACAAACCCGAAGGGGCTGTGAGACTGGCAAGCATTGCTGTGCAGTGCC 1163 Query 1250 TCTCATTTGAACCCAAGTCGCGCCCGACCATGGACCAAGTGGTCCGTGCCTT-ACAACAA 1308 ||||||| |||||||| || ||||||||||||||||||||||| || ||||| | | || Sbjct 1164 TCTCATTCGAACCCAAATCACGCCCGACCATGGACCAAGTGGTTCGAGCCTTGATA-CAG 1222 Query 1309 CTTCAGGACAACTTGGGAAAACCGAGTC 1336 || || |||| | ||| |||||| ||| Sbjct 1223 CTGCAAGACAGCGTGGTTAAACCGGGTC 1250 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66543658015 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5