BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39710.1 Length=1593 Score E Sequences producing significant alignments: (Bits) Value Ahg482993 jgi|Araly1|482993|fgenesh2_kg.4__2053__AT2G39710.1 2030 0.0 > Ahg482993 jgi|Araly1|482993|fgenesh2_kg.4__2053__AT2G39710.1 Length=1451 Score = 2030 bits (1099), Expect = 0.0 Identities = 1301/1399 (93%), Gaps = 11/1399 (1%) Strand=Plus/Plus Query 23 TCATCATTATCTCTTTCAAAAAAT-TTTCTTCGAATCTCAGTTCTACTTCTTATTTTCCC 81 ||||||| ||||||||| ||| | ||||||||||||||| |||||||||| |||||||| Sbjct 10 TCATCATCATCTCTTTC-AAATTTGTTTCTTCGAATCTCAATTCTACTTCTCATTTTCCC 68 Query 82 TCTAACGTTCTGCAAAACATCTTCTACAAATCAAACACTACTCTTCTCTCTCAAAACACA 141 ||| ||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 69 TCTCACGTTATGCAAAACATCTTCTTCAGATCAAACACTACTCTTCTCTCTCAAAACACA 128 Query 142 GAAACTTCCTCAGTCTTCTTCAGACAAGCTTTCATTCAGACACAATGTTACTCTCACCGT 201 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 129 GAAACTTCCTCAGTCTTCTTCAGACAAGCTTTCATTCAGACACAATGTTACTCTCACGGT 188 Query 202 CACTCTCGCCGTCGGCGATCCACCTCAAAATATCTCGATGGTTCTTGATACCGGAAGCGA 261 |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 189 CACTCTCGCCGTCGGCTCTCCACCGCAAAATATCTCGATGGTTCTTGATACCGGAAGCGA 248 Query 262 GCTCTCATGGCTTCACTGCAAGAAATCTCCAAACTTAGGATCCGTTTTTAACCCGGTTTC 321 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 249 GCTTTCATGGCTTCACTGCAAGAAATCTCCAAACTTAGGATCCGTTTTTAACCCGGTTTC 308 Query 322 ATCCTCTACGTACTCCCCTGTGCCTTGCTCCTCACCAATTTGCAGGACCCGTACCCGGGA 381 ||||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| Sbjct 309 ATCCTCTACGTACTCTCCAGTACCTTGCTCCTCACCAATTTGCAGGACCCGGACCCGGGA 368 Query 382 TTTACCCATACCCGCTTCATGCGATCCGAAGACCCATCTCTGCCACGTGGCTATCTCCTA 441 |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || Sbjct 369 TTTACCCATACCCGCTTCATGCGATCCGAAGACCCATCTCTGTCACGTGGCAATCTCTTA 428 Query 442 CGCTGACGCTACATCAATCGAAGGCAACTTGGCTCATGAGACGTTCGTAATCGGGTCTGT 501 | |||||||||| ||||| ||||| ||||| ||||| || |||||||||||||||||||| Sbjct 429 CTCTGACGCTACCTCAATTGAAGGTAACTTAGCTCACGACACGTTCGTAATCGGGTCTGT 488 Query 502 GACCCGACCCGGTACTTTATTCGGGTGTATGGACTCAGGTTTAAGCTCCAATTCGGAGGA 561 ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 489 GACCCGACCCGGTACCTTATTCGGGTGTATGGACTCAGGTTTAAGCTCTGATTCGGAGGA 548 Query 562 AGATGCTAAATCGACCGGTTTAATGGGAATGAACCGGGGATCTTTATCTTTTGTTAACCA 621 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 549 AGACGCTAAATCGACCGGTTTAATGGGAATGAACCGGGGATCTTTATCTTTTGTTAACCA 608 Query 622 GCTGGGTTTCTCAAAATTTTCGTATTGCATATCCGGTTCAGATTCCTCCGGTTTTTTGCT 681 ||| |||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| Sbjct 609 GCTAGGTTTCTCAAAATTCTCGTATTGCATCTCCGGTTCAGATTCCTCCGGTATTTTGCT 668 Query 682 TCTCGGTGACGCGTCCTACTCCTGGCTCGGTCCAATCCAATATACGCCTCTGGTTCTACA 741 ||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||| || Sbjct 669 TCTCGGTGACGCGTCTTATTCCTGGCTCGGTCCAATCCAATACACGCCTTTGGTTCTCCA 728 Query 742 ATCGACGCCGTTACCTTATTTCGACCGGGTTGCTTACACGGTCCAATTAGAAGGAATCCG 801 | |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 729 AACGACACCATTACCGTATTTCGACCGGGTTGCTTACACGGTCCAATTAGAAGGAATCCG 788 Query 802 GGTCGGGTCAAAGATACTTTCTTTACCGAAATCTGTATTCGTACCGGATCATACCGGAGC 861 ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 789 GGTTGGGTCAAAGATACTTTCTTTACCGAAATCCGTATTCGTACCGGACCATACCGGAGC 848 Query 862 AGGTCAGACGATGGTGGATTCAGGTACCCAATTTACGTTCCTAATGGGTCCGGTTTACAC 921 |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 849 CGGTCAGACCATGGTGGATTCAGGTACACAATTTACGTTCCTAATGGGTCCGGTTTACAC 908 Query 922 TGCCTTAAAAAACGAGTTTATTACGCAAACCAAATCGGTTCTCAGGCTTGTAGACGACCC 981 ||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||| Sbjct 909 TGCCTTAAAAAACGAGTTTATCGCGCAAACCAAATCGGTTCTCAGAATAGTAGACGACCC 968 Query 982 GGATTTCGTGTTCCAAGGGACAATGGACCTTTGTTACAAGGTTGGGTCAACGACACGGCC 1041 | |||| ||||||||||||||||||||||| |||||| |||||| || | || ||||| Sbjct 969 GAATTTTGTGTTCCAAGGGACAATGGACCTATGTTACCGGGTTGGATCGTCAACCCGGCC 1028 Query 1042 CAATTTCTCGGGTTTACCCATGGTTAGTTTAATGTTCCGTGGCGCGGAGATGAGTGTGTC 1101 ||||||| | ||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1029 CAATTTCACAGGTTTACCCGTGATTAGTTTAATGTTCCGTGGCGCGGAGATGAGTGTGTC 1088 Query 1102 GGGTCAGAAACTGTTGTACCGGGTAAACGGAGCCGGGTCGGAAGGAAAAGAAGAAGTATA 1161 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 1089 GGGTCAGAAACTGTTGTACCGGGTAAACGGAGCCGGGTCGGAAGGAAAAGAGGAAGTGTA 1148 Query 1162 TTGCTTCACGTTTGGGAACTCTGATCTTTTGGGGATAGAAGCATTTGTTATAGGTCACCA 1221 ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1149 TTGCTTCACATTTGGAAACTCTGATCTTTTGGGAATAGAAGCATTTGTTATAGGTCACCA 1208 Query 1222 TCATCAGCAAAACGTGTGGATGGAGTTTGATTTAGCTAAATCAAGGGTTGGTTTCGCTGG 1281 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1209 TCATCAGCAAAACGTGTGGATGGAGTTTGATTTAGCTAAATCAAGGGTTGGTTTTGCTGG 1268 Query 1282 TAACGTCAGATGTGATTTAGCTAGTCAACGGCTCGGATTAAGAGATTGATAGGACTTGTT 1341 |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1269 TAACGTTAGATGTGATCTAGCTAGTCAACGGCTCGGATTAAGAGATTGATAGGACTTGTT 1328 Query 1342 TAAGTCTTCTGTGTCGTGTGTGACATGAGAATATCTTCTAGACCATTGATACGTTTTTAT 1401 |||||| || | ||| | | |||||||||| |||||||||| |||| ||| ||| Sbjct 1329 TAAGTC----GTAT-GTG-GAAA-ATGAGAATATTTTCTAGACCAA--ATACATTTATAT 1379 Query 1402 AGTTTTGTGAGTATAGCTT 1420 |||||||| || ||||||| Sbjct 1380 AGTTTTGTAAGGATAGCTT 1398 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59687413915 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5