BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39720.1 Length=1614 Score E Sequences producing significant alignments: (Bits) Value Ahg934736 jgi|Araly1|934736|scaffold_402724.1 1805 0.0 > Ahg934736 jgi|Araly1|934736|scaffold_402724.1 Length=1243 Score = 1805 bits (977), Expect = 0.0 Identities = 1166/1252 (93%), Gaps = 34/1252 (3%) Strand=Plus/Plus Query 92 TCTTTCAGATCCCTATTCTCATGGCTTCTGGATCTTACTGGTGCTATAGTTGTAGCCGAT 151 |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct 1 TCTTTCAGATCCCTATTCCCATGGCTTCTGGATCTTACTGGTGTTATAGTTGTAGCCGAT 60 Query 152 TCGTTTGGGTTTCCGATTCAATCTCTTGCCCTGATTGCGACGGTGGTTTCCTCGAACTCA 211 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 61 TCGTTTGGGTTTCCGATTCTCTCTCTTGCCCTGATTGCGACGGTGGTTTCCTCGAACACA 120 Query 212 TCCAAGAGCCTCTCGATTTCACACCTTCCGATTCCTT-cacc-ac-caccaccaccacTC 268 ||||||| |||||||||||||||||||||||||||| |||| | |||||||||||||| Sbjct 121 TCCAAGAAACTCTCGATTTCACACCTTCCGATTCCTTCCACCGTCTCACCACCACCACTC 180 Query 269 AACATCGCAGCCCCACTCGCTTCCCTCC-TCCTTCTTCTTCTTCCTCCACCCCATCCGCT 327 |||||||||||||||||||||||||||| ||| || |||||||| || ||||| |||||| Sbjct 181 AACATCGCAGCCCCACTCGCTTCCCTCCTTCC-TCCTCTTCTTCTTCGACCCCCTCCGCT 239 Query 328 T-C-T--A----TGCA-CGCCGATAACAGTCCCACTCCTACCATCGTTACTCGTACACGA 378 | | | | | || |||||| ||||||||||||||||||| |||||||||||| ||| Sbjct 240 TCCATGCACGCTTCCACCGCCGAGAACAGTCCCACTCCTACCACCGTTACTCGTACCCGA 299 Query 379 AGCAATCGATCTCCTAATCCAGTTATTGTTCTCCGTGGATCTGCTGCTGCTCCTTCTTCT 438 |||||||||||||||||||| |||||||||||||||||||||| | |||| | ||||| Sbjct 300 AGCAATCGATCTCCTAATCCGGTTATTGTTCTCCGTGGATCTG--G-TGCT-C--CTTCT 353 Query 439 GATGTTGTTTCCGAAGGTTTAGATCGATCTGCTTTTCAGATGTATTACGATGATGGTACT 498 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 GA---TGTTTCCGAAGGTTTAGATCGATCTGCTTTTCAGATGTATTACGATGATGGTACT 410 Query 499 GATTCTGGTCTTAGACCTTTACCACCGAGTATGACTGAGTTTTTGTTAGGTTCTGGATTT 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 GATTCTGGTCTTAGACCTTTACCACCGAGTATGACTGAGTTTTTGTTAGGTTCTGGATTT 470 Query 559 GATCGTTTGTTAGATCAGATTTCTCAGATCGAGCTTAACACCAATCGGAATCTTCGTTCT 618 ||||| |||||||||||||| |||||||||||||||||||||||||||| || ||||||| Sbjct 471 GATCGCTTGTTAGATCAGATCTCTCAGATCGAGCTTAACACCAATCGGATTCATCGTTCT 530 Query 619 TGTGAACATCCACCGGCTTCTAAATCGGCCATTGAAGCTTTGCCTCTGATTGAAATCGAT 678 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 531 TGTGAACATCCTCCGGCTTCTAAATCGGCCATTGAAGCTTTACCTCTGATTGAAATCGAT 590 Query 679 CCGACTCATCTCTTATCGGATTCTCAATCTCATTGCGCTGTTTGCAAAGAGAATTTCGTT 738 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 591 CCGACTCATCTCGAATCGGATTCTCAATCTCATTGCGCTGTTTGCAAAGAGAATTTCGTT 650 Query 739 TTGAAATCATCTGCTCGCGAGATGCCTTGTAATCACATCTATCATCCTGATTGTATTCTT 798 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 651 TTGAAATCATCTGCTCGTGAGATGCCGTGTAATCACATCTATCATCCTGATTGTATCCTT 710 Query 799 CCTTGGCTTGCGATTCGTAACTCTTGTCCGGTTTGCCGTCATGAGCTACCGGCGGAGGAT 858 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 711 CCTTGGCTTGCGATTCGAAACTCTTGTCCGGTTTGCCGTCATGAGCTACCGACGGAGGAT 770 Query 859 CTCACCGACGGAACCGGTG-CTGCTTTGACTGCTGTTACCGCTACTGCAGAGGAAGAGGA 917 ||||||||||||| ||||| | |||||||||| | | ||||||||||||||||||||||| Sbjct 771 CTCACCGACGGAAGCGGTGGC-GCTTTGACTG-T-T-ACCGCTACTGCAGAGGAAGAGGA 826 Query 918 AGACTCAGCTGCGGGGTTAACGATTTGGAGGTTACCAGGTGGAGGATTCGCTGTAGGGAG 977 |||||| || || ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 827 AGACTCCGCGGCAGGGTTGACGATTTGGAGGTTACCAGGTGGAGGATTCGCTGTTGGGAG 886 Query 978 AATCCCTGGTGGTTGGAGAGGTGGAGATAGAATGATGCCGGTGGTTTACACGGAGGTTGA 1037 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 887 AATCCCTGGTGGTTGGAGAGGAGGAGATAGAATGATGCCGGTGGTTTACACGGAGGTTGA 946 Query 1038 TGGTGGTAGACTCGGTGATGAGAGACTTCCgagaagagtagcttggggttcgagaagagg 1097 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 947 CGGTGGTAGACTCGGTGATGAGAGACTTCCGAGGAGAGTAGCTTGGGGTTCGAGAAGAGG 1006 Query 1098 tggaagagatggtggaggtagtagagagagaggtGGTGGCTTTGCGGGTCGGATCATGAG 1157 ||||||||||| ||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1007 AGGAAGAGATGG---AGGTAGTAGAGAGAGAGGTGGCGGGTTTGCGGGTCGGATCATGAG 1063 Query 1158 GCTTTTCGGATGTTTTAGTGGATCATCTGGATCCATtgctgctgctgctgctgcATCATC 1217 |||||| |||||||||||||| |||||||||||||| |||||||||||||| ||| || Sbjct 1064 GCTTTTTGGATGTTTTAGTGGGTCATCTGGATCCATAGCTGCTGCTGCTGC---ATCGTC 1120 Query 1218 CGGGTCCGGGTCCAGAATTCGGGTTACTCGTAGAACCAGGTCGTTCTCTATGTTCAGTAC 1277 || |||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1121 TGGATCCGGGTCGAGAATTCGGGTTACCCGTAGAACCAGGTCGTTCTCTATGTTTAGTAC 1180 Query 1278 GGCGTCGTCTTCGTCAAGGAGACGAAATTGGCTAGCGTGATTACTAGAATTA 1329 ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1181 GGCTTCGTCTTCGTCAAGGAGACGAAATTGGCTAGCGTGATTACTAGAATTA 1232 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60487309060 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5