BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39740.1
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321659 jgi|Araly1|321659|fgenesh1_pm.C_scaffold_4001716 2374 0.0
Ahg483001 jgi|Araly1|483001|fgenesh2_kg.4__2061__AT2G39750.1 329 4e-89
> Ahg321659 jgi|Araly1|321659|fgenesh1_pm.C_scaffold_4001716
Length=1503
Score = 2374 bits (1285), Expect = 0.0
Identities = 1397/1452 (96%), Gaps = 4/1452 (0%)
Strand=Plus/Plus
Query 191 ATGAGTAGAAACCCTTTCCTGGATCCTACTCTTCAAGAAATTCTTCAAGTGATTAAACCC 250
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTAGAAATCCTTTCCTGGATCCTACCCTTCAAGAAATTCTTCAAGTGATTAAACCC 60
Query 251 ACACGAGCAGATAGGGATACGAGGATCACAGTCATTGATCAGTTGCGTGACGTCTTACAA 310
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 ACACGAGCAGATTGGGATACGAGGATCAGAGTCATTGATCAGTTGCGTGACGTCTTACAA 120
Query 311 TCCGTAGAATGTTTAAGAGGTGCTACTGTTCAACCATTTGGATCCTTTGTGTCAAATCTC 370
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCGTAGAATGCTTAAGAGGTGCTACTGTTCAACCATTTGGATCCTTTGTGTCAAATCTC 180
Query 371 TTCACACGATGGGGAGACTTAGATATCTCTGTTGACTTATTCAGCGGTTCTTCCATCTTG 430
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 181 TTCACACGATGGGGAGACTTGGATCTCTCTGTTGACTTATTCAGCGGTTCTTCCATCTTG 240
Query 431 TTCACTGGAAAGAAGCAGAAACAAACTTTACTCGGACATTTACTACGAGCACTGAGAGCG 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCACTGGAAAGAAGCAGAAACAAACTTTACTCGGACATTTACTACGAGCACTGAGAGCG 300
Query 491 AGTGGTCTATGGTACAAACTGCAATTTGTTATTCATGCGCGAGTTCCTATTCTGAAAGTA 550
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 AGTGGTCTATGGTACAAACTGCAATTTGTTATTCATGCGCGAGTTCCCATTCTGAAAGTC 360
Query 551 GTGAGCGGCCACCAGAGAATTTCTTGTGACATTTCTATTGATAACCTGGATGGGCTTTTG 610
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GTGAGCGGCCACCAGAGAATTTCTTGTGATATTTCTATTGATAACCTGGATGGGCTTTTG 420
Query 611 AAGAGCAGGTTCTTGTTCTGGATCAGTGAAATAGATGGGAGATTCCGCGACCTGGTTTTG 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGAGCAGGTTCTTGTTCTGGATCAGTGAAATAGATGGGAGATTCCGCGACCTGGTTTTG 480
Query 671 CTAGTGAAGGAATGGGCGAAAGCTCATAATATCAACGACTCAAAGACCGGGACTTTCAAC 730
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 CTAGTGAAGGAATGGGCGAAAGCTCATAATATCAACGACTCAAAGAACGGGACTTTCAAC 540
Query 731 TCTTACTCTCTCAGTTTGTTAGTCATCTTCCATTTTCAGACTTGTGTGCCTGCAATCTTG 790
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 TCTTACTCTCTCAGTTTGTTAGTCATCTTCCATCTTCAGACTTGTGTGCCTGCAATCTTG 600
Query 791 CCGCCTCTAAGAGTGATATATCCGAAGAGTGCGGTTGATGATCTGACAGGTGTACGGAAA 850
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 CCGCCTCTAAGAGTCATATATCCGAAGAGTGCGGTTGATGATCTGACAGGTGTACGAAAA 660
Query 851 ACTGCAGAGGAAAGCATAGCGCAAGTTACTGCTGCTAATATTGCGAGATTTAAATCAGAG 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 ACTGCAGAGGAAAGCATAGCGCAAGTTACTGCTGCTAATATTGCGAGATTTAAATTAGAC 720
Query 911 AGAGCAAAATCAGTCAATCGAAGCTCGCTCTCGGAGCTGTTGGTCTCtttttttGCAAAG 970
| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 721 ACAGCAAAATCAGTCAATCGAAGCTCGCTCTCGGAGCTTTTGGTCTCGTTTTTTGCAAAG 780
Query 971 TTTTCAGACATAAACGTGAAGGCCCAAGAGTTCGGTGTTTGCCCGTTTACTGGAAGATGG 1030
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTTTCAGACATAAACTTGAAGGCCCAAGAGTTCGGTGTTTGCCCGTTTACTGGAAGATGG 840
Query 1031 GAAA-CTATAAGCAGCAACACTACATGGCTGCCAAAGACATACTCACTCTTTGTTGAAGA 1089
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAAAAC-ATAAGCAGCAACACTACATGGCTGCCAAAGACATACTCACTCTTTGTTGAAGA 899
Query 1090 TCCTTTTGAGCAGCCGGTGAACGCTGCAAGGAGTGTGAGCCGTAGAAATTTGGACAGAAT 1149
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 TCCTTTTGAGCAACCGGTGAACGCTGCAAGGAGTGTGAGCCGTAGAAATTTGGATAGAAT 959
Query 1150 AGCTCAAGTATTTCAGATTACATCGCGCCGTCTTGTCTCAGAGTGTAACAGAAACTCCAT 1209
|||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||
Sbjct 960 AGCTCAAGTATTTCAGATTACATCGCACCGTCTTGTCTCAGATTGTAACAGGAACTCCAT 1019
Query 1210 CATAGGGATTCTGACAGGGCAACACATTCAAGAGTCTTTGTACAGAACAATAAGCCTCCC 1269
||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1020 CATTGGGGTTCTGACAGGGAAACACATTCAAGAGTCTTTGTATAGAACAATAAGCCTCC- 1078
Query 1270 A-AGTCAACATCATGCAAACGGTATGCACAATGTCCGTAATCTGCATGGTCAGGCTAGGC 1328
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATAGTCAACATCATGCAAACGGTATGCACAATGTCCGTAATCTGCATGGTCAGGCTAGGC 1138
Query 1329 CACAGAACCAGCAAATGCAGCAAAATTGGTCACAGAGCTACAATACCCCGAATCCACCAC 1388
| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1139 CTCGGAACCAGCAAATGCAGCAAAATTGGTCACAGAGCTACAATACCCAAAATCCACCAT 1198
Query 1389 ATTGGCCACCACTAACACAATCCCGACCACAACAGAATTGGACTCAGAACAACCCCAGGA 1448
|||||||||| | |||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct 1199 ATTGGCCACCTCCAACACAATCCCGACAACAACAGAATTGGCCTCAGAACAGCCCCAGGA 1258
Query 1449 ATCTTCAGGGGCAACCACCTGTCCAAGGCCAAACTTGGCCTGTAATCACACAAACTCAAA 1508
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1259 ATCTTCAGGGGCAACCACCTGTCCAAGGCCGAACTTGGCCTGTAATCACACAAACTCAAA 1318
Query 1509 CGCAGCAGAAGAGCCCATATAAGAGTGGGAACCGACCATTGAAAAATACATCTGCTGGTT 1568
|| ||||||||| | ||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct 1319 CGGAGCAGAAGAATCAATACAAGAACGGGAACCGACCATTGAAAAATACATCTGCAGGTT 1378
Query 1569 CAAGTCAGAATCAGGGCCACATTGGTAAGCCATCTGGTCATATGAATGGTGTGAACTCTG 1628
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1379 CAAGTCAGAATCAGGGTCACATTGGTAAGCCATCAGGTCATATGAATGGTGTGAACTCTG 1438
Query 1629 CAAGACCTGCAT 1640
||||||||||||
Sbjct 1439 CAAGACCTGCAT 1450
Score = 132 bits (71), Expect = 1e-29
Identities = 81/86 (94%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 1641 ATACGAATGGTGTGAACTCCGCAAGGCCTCCATCAAAAATTCCAAGCCAAGGCGGACAGA 1700
||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1418 ATATGAATGGTGTGAACTCTGCAAGACCTGCATCAAAAATTCCAAGCCAAGGCGGACAGA 1477
Query 1701 TCTGGAGACCGAGACATGAGCAGTAG 1726
| ||||||||||||||||||||||||
Sbjct 1478 TGTGGAGACCGAGACATGAGCAGTAG 1503
> Ahg483001 jgi|Araly1|483001|fgenesh2_kg.4__2061__AT2G39750.1
Length=2143
Score = 329 bits (178), Expect = 4e-89
Identities = 199/208 (96%), Gaps = 6/208 (3%)
Strand=Plus/Minus
Query 1937 GAAGAAAACAATAAGAGATATACTACCAAACAAAATATATTGTGTTGACT--AGTGCAGT 1994
||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 2143 GAAGAAAACAATAAGAGATAT--TACCAAAC--AATATATTGTGTTGACTAAAGTGCAGT 2088
Query 1995 AACTTGTGTGGTATTAAGCTCGAAGGAGACGCTTCTCGCATGTTAGAATCCTGTAACTTG 2054
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2087 AACTTGTCTGGTATTAAGCTCGAAGGAGACGCTTCTCACATGTTAGAATCCTGTAACTTG 2028
Query 2055 CGTGAGGACCCTCGGATGTGTCACGCAGAGAAGTATGCCAACCCATGGCCTTTGTGATTT 2114
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2027 CGTGAGGACCCTCGGATGTGTCACGCAGAGAAGTATGCCAACCCATAGCCTTTGTGATTT 1968
Query 2115 CTTGAATTTCATCCATAACATCAATTGA 2142
||||||||||||||||||||||||||||
Sbjct 1967 CTTGAATTTCATCCATAACATCAATTGA 1940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80598958420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5