BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39770.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483004 jgi|Araly1|483004|fgenesh2_kg.4__2064__AT2G39770.1 2285 0.0
Ahg938499 jgi|Araly1|938499|scaffold_502690.1 261 1e-68
> Ahg483004 jgi|Araly1|483004|fgenesh2_kg.4__2064__AT2G39770.1
Length=1472
Score = 2285 bits (1237), Expect = 0.0
Identities = 1405/1484 (95%), Gaps = 20/1484 (1%)
Strand=Plus/Plus
Query 3 TGCCTATCATTTTGCCAACGAACGTTCTTTCTTCTTAATCACAGCTCAGCCTGACGC-AA 61
|||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 1 TGCCTATCATTTTGCCAACGAACGTTCTTTCTGC---ATCACAGCTCAGCCTGACGCAAA 57
Query 62 CCGCTCAGGCTGATCTCTTCCAATTTACAGCCATTTCCCAGCTCAGATCTCTGATCCGGT 121
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 58 CCGCTCAGGCTGATCTCTTCCATTTTACAGCCATTTCCCAGCTCAGATCTCTGATCCGGT 117
Query 122 GAGATCTCTCTCAAGGAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGT 181
||||||||| |||||| |||||||||||||||| | |||||||||||||||||||||||
Sbjct 118 GAGATCTCTTTCAAGGGAAAGGAGTTAGAGCAT-A--AAGATGAAGGCACTCATTCTTGT 174
Query 182 TGGAGGCTTCGGCACTCGCTTGAGACCATTGACTCTCAGTTTCCCAAAGCCCCTTGTTGA 241
|||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||
Sbjct 175 TGGAGGCTTCGGCACTCGGTTGAGGCCATTGACTCTCAGTTTCCCAAAGCCGCTCGTTGA 234
Query 242 TTTTGCTAATAAACCCATGATCCTTCATCAGATAGAGGCTCTTAAGGCAGTTGGAGTTGA 301
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TTTTGCAAATAAACCCATGATCCTTCATCAGATAGAGGCTCTTAAGGCAGTTGGAGTTGA 294
Query 302 TGAAGTGGTTTTGGCCATCAATTATCAGCCAGAGGTGATGCTGAACTTCTTGAAGGACTT 361
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 295 TGAAGTGGTTTTGGCCATCAATTACCAGCCAGAGGTGATGCTGAACTTCTTGAAGGACTT 354
Query 362 TGAGACCAAGCTGGAAATCAAAATCACTTGCTCACAAGAGACCGAGCCACTAGGTACCGC 421
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 355 TGAGACCAAGCTCGAAATCAAAATCACTTGCTCACAAGAGACCGAGCCACTAGGTACGGC 414
Query 422 TGGTCCTCTGGCTCTAGCGAGAGACAAATTGCTTGATGGATCTGGAGAGCCCTTCTTTGT 481
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 415 TGGTCCTCTGGCTCTAGCGAGAGACAAATTGGTTGATGGATCTGGAGAGCCCTTCTTTGT 474
Query 482 TCTTAACAGTGATGTGATTAGTGAGTACCCTCTTAAAGAAATGCTTGAGTTTCACAAATC 541
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 475 TCTTAACAGTGATGTGATTAGTGAGTACCCACTTAAAGAAATGCTTGAGTTTCACAAAAC 534
Query 542 TCACGGTGGGGAAGCCTCCATAATGGTAACAAAGGTGGATGAACCGTCGAAATATGGAGT 601
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 535 TCACGGCGGGGAAGCCTCCATAATGGTGACAAAGGTGGATGAACCGTCTAAATATGGAGT 594
Query 602 GGTTGTTATGGAAGAAAGCACTGGAAGAGTGGAGAAGTTTGTGGAAAAGCCAAAACTGTA 661
|||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 595 GGTTGTTATGGAAGAAAGTACAGGAAAAGTGGAGAAGTTTGTGGAAAAGCCAAAACTGTA 654
Query 662 TGTAGGTAACAAGATCAACGCTGGGATTTATCTTCTGAACCCATCTGTTCTTGATAAGAT 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 655 TGTAGGTAACAAGATCAACGCTGGGATTTATCTTCTGAACCCATCTGTTCTTGACAAGAT 714
Query 722 TGAGCTAAGACCGACTTCAATCGAAAAAGAGACTTTCCCTAAGATTGCAGCAGCGCAAGG 781
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 715 TGAGCTAAGACCGACCTCGATCGAAAAAGAGACCTTCCCTAAGATTGCAGCAGCGCAAGG 774
Query 782 GCTCTATGCTATGGTGCTACCAGGG-TTTTGGATGGACATTGGGCAACCCCGTGACTACA 840
||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 775 GCTCTATGCTATGGTCCTACC-GGGATTTTGGATGGACATTGGGCAACCCCGTGACTACA 833
Query 841 TAACGGGTTTGAGACTCTACTTAGACTCCCTTAGGAAGAAATCTCCTGCCAAATTAACCA 900
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 834 TAACCGGTTTGAGACTCTACTTAGACTCCCTTAGAAAGAAATCTCCTGCCAAGTTAACCA 893
Query 901 GTGGGCCACACATAGTTGGGAATGTTCTTGTTGACGAAACCGCTACAATTGGGGAAGGAT 960
|||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 894 GTGGTCCACACATTGTTGGGAATGTTCTTGTTGATGAAACTGCTACGATTGGGGAAGGAT 953
Query 961 GTTTGATTGGACCAGACGTTGCCATTGGTCCAGGCTGCATTGTTGAGTCAGGAGTCAGAC 1020
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 954 GTTTGATTGGACCAGACGTTGCCATTGGTCCGGGATGCATTGTTGAGTCAGGAGTCAGGC 1013
Query 1021 TCTCCCGATGCACGGTCATGCGTGGAGTCCGCATCAAGAAGCATGCGTGTATCTCGAGCA 1080
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1014 TCTCGCGATGCACGGTCATGCGTGGAGTCCGCATCAAGAAGCATGCATGTATCTCGAGCA 1073
Query 1081 GTATCATCGGGTGGCACTCAACGGTTGGTCAATGGGCCAGGATCGAGAACATGACGATCC 1140
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1074 GTATCATCGGGTGGCACTCAACGGTTGGACAATGGGCCAGGATTGAGAACATGACGATCC 1133
Query 1141 TCGGTGAGGATGTTCATGTGAGCGATGAGATCTATAGCAATGGAGGAGTTGTTTTGCCAC 1200
| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1134 TTGGAGAAGATGTTCATGTGAGCGATGAGATCTATAGCAATGGAGGAGTTGTTTTACCAC 1193
Query 1201 ACAAGGAGATCAAATCAAACATCTTGAAGCCAGAGATAGTGATGTGAAAA-TGAGATATT 1259
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1194 ACAAGGAGATCAAATCAAACATCTTGAAGCCAGAGATAGTGATGTGAAAAATGTGATATT 1253
Query 1260 ATATGTGCAACtttttttttttttttt-GTGTCCTTTCTTCAACTTTGAAATCGCTTTCG 1318
||||||||||||||||||||||||||| ||||||||| || |||||| ||||||||||||
Sbjct 1254 ATATGTGCAACTTTTTTTTTTTTTTTTTGTGTCCTTTTTTTAACTTT-AAATCGCTTTCG 1312
Query 1319 TAATTCTTAATGGCTTTTGAATAAGCA----TCAATCAAAACGCTGTATATCTTGTTAGG 1374
| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1313 TTATTCTTGTTGGCTTTTGAATAAGCAAGCATCAATCAAAACGCTGTATATCTTGTTAGA 1372
Query 1375 GTCGTTTGCTGTTTTGTCTCtttttttGTTTTGTAATTTATaaaaaaaTTTATTCTCATT 1434
||| |||| |||||||||||||||| | ||| ||||||||| |||| | ||||||| |
Sbjct 1373 GTCATTTGGTGTTTTGTCTCTTTTTGTATTT-GTAATTTATTAAAAC-T--ATTCTCAGT 1428
Query 1435 TTATGTGAGATACTTTTGAATATTCATTAATTATAAAGCttttt 1478
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 TTATGTGAGATACTTTTGAATATTCATTAATTATAAAGCTTTTT 1472
> Ahg938499 jgi|Araly1|938499|scaffold_502690.1
Length=358
Score = 261 bits (141), Expect = 1e-68
Identities = 268/326 (82%), Gaps = 21/326 (6%)
Strand=Plus/Plus
Query 155 CATCAAGATGAAGGCACTCATTCTTGTTGGAGGCTTCGGCACTCGCTTGAGACCATTGAC 214
|||||||||||| || || ||||| |||||||| || |||||||||||||||||||||||
Sbjct 14 CATCAAGATGAAAGCTCTTATTCTAGTTGGAGGTTTTGGCACTCGCTTGAGACCATTGAC 73
Query 215 TCTCAGTTTCCCAAAGCCCCTTGTTGATTTTGCTAATAAACCCAT----GATCCTTCATC 270
|||||||||||||||||| ||||||||||| ||||||||||| || |||||| ||||
Sbjct 74 TCTCAGTTTCCCAAAGCCGCTTGTTGATTTCGCTAATAAACCTATATATGATCCTACATC 133
Query 271 AGATAGAGGCTCTTAAGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAATTATCAGC 330
||| | | | ||||||||| ||||||| |||||||| ||||||||||| || ||| |||
Sbjct 134 AGA--G-G-CACTTAAGGCAATTGGAGTCGATGAAGTTGTTTTGGCCATTAACTATGAGC 189
Query 331 CAGAGG---TG--A-TGCTG---AACTTCTTGAAGGACTTTGAGACCAAGCT-GGAAATC 380
||||| || | || || || |||| |||||| ||||||| || || || | |
Sbjct 190 CAGAGCAACTGCTAGTGATGTCGAAATTCTCAAAGGACGTTGAGACAAATCTCGGGA-T- 247
Query 381 AAA-ATCACTTGCTCACAAGAGACCGAGCCACTAGGTACCGCTGGTCCTCTGGCTCTAGC 439
||| ||||| |||||||||||||| ||||| ||||||| ||||||||| ||||| ||||
Sbjct 248 AAAGATCACCTGCTCACAAGAGACAGAGCCTTTAGGTACAGCTGGTCCTTTGGCTTTAGC 307
Query 440 GAGAGACAAATTGCTTGATGGATCTG 465
||| |||||| || ||||||| ||||
Sbjct 308 GAGGGACAAACTGGTTGATGGCTCTG 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5