BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39805.2
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934753 jgi|Araly1|934753|scaffold_402741.1 1411 0.0
> Ahg934753 jgi|Araly1|934753|scaffold_402741.1
Length=872
Score = 1411 bits (764), Expect = 0.0
Identities = 834/868 (96%), Gaps = 4/868 (0%)
Strand=Plus/Plus
Query 187 TTTTCTCTTTGATCGATGGATGAGTCGTTCGCTAATCTACAATCAAGCCATTTGCTTGGT 246
||||||| ||| || ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 7 TTTTCTCGTTGTTCAATGGATGAGTCGTTCGCTAATCTACAAACGAGCCATTTGCTTGGT 66
Query 247 TCAGTTCCGGCTGTGATCAGCGACGACAAGAGAAGCACAAATGTACCAATAGCAAGCGTC 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TCAGTTCCGGCTGTGATCAGCGACGACAAGAGAAGCACAAATGTACCAATAGCAAGCGTA 126
Query 307 AATGAAGGCCCTTCTGC-AAGCATGCAAATATTTCCACCGAATCTAGGAAACAATACAAA 365
|||||||| |||||||| || |||||||||||||||||| ||||||||||||||||||||
Sbjct 127 AATGAAGGTCCTTCTGCTAA-CATGCAAATATTTCCACCAAATCTAGGAAACAATACAAA 185
Query 366 GGGTTATCAAACTCTTGAGAGCCCAACAGTAGAAGGACCAGCACAACAGCCATCAAACAA 425
||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||
Sbjct 186 GGGTTATCAAACTCTTGAGAGTCCAACAGTAGAAGGACCAGAACTACAGCCATCAAACAA 245
Query 426 CTGGAAGGGCTTTTTTAATGTCTACTCATATACCCAATACTTCGACGTGGACACGGACGT 485
||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 246 CTGGAAGGGATTTTTTAACGTTTACTCATATACCCAATACTTCGACGTGGACACGGACGT 305
Query 486 TGTTTTGAACAGATTAATGAGCTCTTTATATCCTACTAGTGGAGATTTTTTCAACAAGAT 545
||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 306 TGTATTGAACAGATTGATGAGCTCGTTATATCCTACTAGTGGGGATTTTTTCAACAAGAT 365
Query 546 TGATGCAAACCCTGATTTGTATGGACTTGTCTGGATCTGCACTACGCTTGTGTTTGTGCT 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TGATGCAAACCCTGATTTGTATGGACTTGTCTGGATCTGCACTACGCTTGTGTTTGTGCT 425
Query 606 TGCTTCTCTCGGAAATTGTGCTACATATCTCGTGAAGAAACGAACCGACAGTAATGCTCC 665
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 426 TGCTTCTCTCGGAAATTGTGCCACGTATCTCGTGAAGAAACGAACCGACAGTAATGCTCC 485
Query 666 TTGGATCTTTGATGTGAACTATATGAATTTGGCAGCATCTATAATATATGGATATGCAAT 725
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 486 TTGGATCTTTGATGTGAACTATATGAATTTGGCAGCATCTATAATCTATGGATATGCAAT 545
Query 726 AATTGTGCCTCTGGGATTTTATTT-TGCACTCCGTTATATGGGGTCCAAAGCTGATCTTC 784
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 546 AATTGTGCCTCTGGGATTTTATTTCT-CACTCCGTTATATGGGGTCCAAAGCTGATCTTC 604
Query 785 TAAGATTCTGGTGCCTTTGGGGATACTCTCTCTTCATTTTCGTTCCAACCTCTCTTCCAT 844
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 605 TAAGATTCTGGTGCCTCTGGGGATACTCTCTCTTCATCTTCGTTCCAACCTCTCTTCCAT 664
Query 845 TGCTTATTCCAGTAGAGTTTCTGAGATGGGTGATTATACTCTTAGCTGGTAGTGCATCAT 904
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TGCTTATTCCCGTAGAGTTTCTGAGATGGGTGATTATACTCTTAGCTGGTAGTGCATCAT 724
Query 905 CGTGTTTTGTTGCCCTGAATCTACGGTCTTACCTCGAGACGAACAATGATATCACGGTTG 964
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 725 CGTGCTTTGTTGCCCTGAATCTACGGTCCTACCTCGAGACGAACAATGATATCACGGTTG 784
Query 965 TAATGGCTGCAGCATTTGGTCTGCAAATGGTTCTTTCAATCTTCATCAAGGTCTGGTTCT 1024
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 785 TAATGGCTGCAGCATTTGGTCTGCAAATGGTTCTTTCGATCTTCATCAAGGTCTGGTTCT 844
Query 1025 TTCCTTAATCTCCATGAGACGGTCAACA 1052
|||||||||||||| || || |||||||
Sbjct 845 TTCCTTAATCTCCACGACACAGTCAACA 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49864775436
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5