BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39840.1
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483018 jgi|Araly1|483018|fgenesh2_kg.4__2078__AT2G39840.1 1858 0.0
Ahg897508 jgi|Araly1|897508|Al_scaffold_0005_1474 440 1e-122
> Ahg483018 jgi|Araly1|483018|fgenesh2_kg.4__2078__AT2G39840.1
Length=1299
Score = 1858 bits (1006), Expect = 0.0
Identities = 1210/1301 (93%), Gaps = 44/1301 (3%)
Strand=Plus/Plus
Query 124 tttcttttttGGGGTCG-AAAAAATTA-GGtttttttttG---GGATTCTGTTGATGGcg 178
||| ||||||||||||| ||||||||| |||||||||||| || ||||||| ||||||
Sbjct 31 TTT-TTTTTTGGGGTCGAAAAAAATTAGGGTTTTTTTTTGTTTGG-TTCTGTTAATGGCG 88
Query 179 acgacgacgacgacgCAGGGGCAGCAAACGGCGATTGACTCGGCGGTTCTCGATGATATA 238
||||||||| | | | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 89 ACGACGACG-C-A---A-GGGCAGCAAACGGCGATTGACACGGCGGTTCTCGATGATATA 142
Query 239 ATCAGGCGACTCACGGAGGTCCGGTTAGCTAGACCAGGAAAGCAAGTCCAGCTCTCTGAA 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 143 ATCAGGCGACTCACGGAGGTCCGGTTAGCTAGACCAGGAAAGCAAGTCCAGCTCTCGGAA 202
Query 299 GCTGAGATCAAACAGCTCTGTACTACAGCTAGAGATATTTTCCTTCAGCAACCCAATTTA 358
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 203 GCTGAGATCAAACAGCTCTGTACTACAGCTAGAGATATTTTTCTTCAGCAACCCAATTTG 262
Query 359 CTTGAGCTTGAGGCTCCCATCAAAATCTGTGGTGACATACATGGGCAATATAGTGATTTG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 263 CTTGAGCTTGAGGCTCCCATCAAAATCTGTGGTGACATACATGGGCAATATAGTGATCTG 322
Query 419 TTGAGGCTATTTGAGTATGGTGGCTTCCCTCCTAGTGCCAATTATCTATTTCTTGGGGAC 478
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 323 CTGAGGCTATTCGAGTATGGTGGCTTCCCTCCTAGTGCCAATTATCTATTTCTGGGGGAT 382
Query 479 TATGTGGACAGAGGCAAACAGAGTCTTGAAACAATATGTCTCTTACTAGCTTACAAGATC 538
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 TATGTGGACCGAGGCAAACAGAGTCTTGAAACAATATGTCTCTTACTAGCTTACAAGATC 442
Query 539 AAATACCCTGGCAACTTTTTTCTACTAAGGGGAAACCACGAATGTGCTTCTATCAATAGG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 443 AAATACCCTGGCAACTTTTTTCTACTAAGGGGAAACCACGAATGTGCTTCTATCAATCGG 502
Query 599 ATATATGGATTTTATGATGAGTGTAAAAGGAGGTTCAATGTGAGAGTATGGAAGGTTTTT 658
|| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 503 ATTTATGGGTTTTATGATGAATGTAAAAGGAGGTTCAATGTGAGGGTATGGAAGGTTTTC 562
Query 659 ACTGATTGTTTTAACTGCCTTCCTGTTGCGGCGCTTATAGATGACAAAATATTGTGTATG 718
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 ACTGACTGTTTTAATTGCCTTCCTGTTGCGGCGCTTATAGATGACAAAATATTGTGTATG 622
Query 719 CACGGTGGACTTTCGCCGGATCTTGACCATTTGGATGAGATTAGAAACTTGCCGAGACCA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 623 CACGGTGGACTTTCGCCGGATCTTGACCATTTGGATGAGATTAGAAACTTGCCTCGTCCT 682
Query 779 ACTATGATTCCGGATACCGGGCTTCTCTGTGATTTGCTCTGGTCTGATCCTGGGAAAGAT 838
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 ACTATGATTCCTGACACCGGGCTTCTCTGTGATTTGCTCTGGTCTGATCCTGGGAAAGAT 742
Query 839 GTTAAAGGATGGGGAATGAATGATAGAGGTGTTTCATACACCTTTGGTCCAGATAAAGTT 898
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 743 GTTAAAGGATGGGGAATGAATGATAGAGGTGTTTCATACACCTTTGGTCCTGATAAAGTT 802
Query 899 TCCGAGTTTCTTACGAAACATGATTTAGATCTTGTGTGTCGTGCCCATCAGGTCGTGGAG 958
||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 803 TCCGAGTTTCTCACAAAACATGATTTAGACCTTGTGTGTCGTGCCCATCAGGTTGTGGAG 862
Query 959 GATGGGTATGAGTTCTTTGCTGATAGACAACTTGTGACGGTGTTTTCAGCTCCTAACTAC 1018
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 GATGGTTATGAGTTCTTTGCTGATAGACAACTTGTGACGGTGTTTTCAGCTCCTAACTAC 922
Query 1019 TGTGGTGAATTTGATAATGCTGGTGCGATGATGAGCGTGGACGAGAACCTTATGTGCTCG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 TGTGGTGAATTTGATAATGCTGGTGCGATGATGAGCGTGGACGAGAACCTTATGTGCTCG 982
Query 1079 TTTCAGATTTTGAAGCCCGCTGAGAAGAAGACCAAGTTCATGATGTCCACAAAGATTTGA 1138
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 983 TTTCAGATTTTGAAGCCCGCAGAGAAGAAGACCAAATTCATGATGTCCACAAAGATTTGA 1042
Query 1139 TACTTTCATTGAGATG-G--ATTTGGTCTTTC-TTGAGAAATTGATTG-AAACCATTGAA 1193
| ||||||||||| | | | | | ||| || ||| | |||| |||||||||||
Sbjct 1043 TCCTTTCATTGAGGTTAGTCAGTAG-TCTGTCCTTG-G---TTGAAACCAAACCATTGAA 1097
Query 1194 GATTTGGCTGTGAAGTGTGTACTTATGGTAGTGAGAACTCTTGGAAAGGAGCAAGACCTT 1253
|||||||| ||||||||||||| | | | | ||||||||||||||||||
Sbjct 1098 CATTTGGCTTTGAAGTGTGTACT---G--A-T------T---GGAAAGGAGCAAGACCTT 1142
Query 1254 CTTAGTCTTCTAATCTCTTTCTTCCCCCAAATTCACTTTCAGCAt-tttttttCTATCTT 1312
|||||||||||||||||||||||| |||||||||||| || | ||||||||||||||
Sbjct 1143 ---AGTCTTCTAATCTCTTTCTTCCCC-AAATTCACTTTCTGCGTATTTTTTTCTATCTT 1198
Query 1313 C-TTTTATGGGTTTTACATGATTTTCATCTGCCTGTTGGGATCACATAGTTGGTGTGTAC 1371
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1199 CATTTTATGGGTTTTACATGATTTTCATCTGCCTGTTGAGATCACATAGTTGGTGTGTAC 1258
Query 1372 ATGCATATGGTCGTTTCTTGGATTTTAGGACACCAAATGAA 1412
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATGCATATGGTCGTTTCTTGGATTTTAGGACACCAAATGAA 1299
> Ahg897508 jgi|Araly1|897508|Al_scaffold_0005_1474
Length=939
Score = 440 bits (238), Expect = 1e-122
Identities = 616/792 (78%), Gaps = 52/792 (7%)
Strand=Plus/Plus
Query 329 AGAGATATTTTCCTTCAGCAACCCAAT-TTACTTGAGCTTGAGGCTCCC-ATCAAAATCT 386
||||||| ||| ||||| || || | || |||||||| | || ||| | || ||||
Sbjct 147 AGAGATA-TTT-CTTCAACAGCCTTGTCTT-CTTGAGCTCGCTGC-CCCTGTTAAGATCT 202
Query 387 GTGGTGACATACATGGGCAATA-TAGTGATTTGTTGAGGCTATTT-GAGTATGGTGGCTT 444
||||||| || || || ||||| | ||||| |||||||| ||| |||||||| || ||
Sbjct 203 GTGGTGATATTCACGGTCAATACT-CAGATTTATTGAGGCT-TTTCGAGTATGGAGGTTT 260
Query 445 CCCTCCTAG-TGCCAATTATC-TATTTCTT-GGGGACTATGTGGACAGAGGCAAACAGAG 501
||||||| | || || || | || ||||| || || || || ||| | || || |||||
Sbjct 261 CCCTCCT-GCAGCAAACTA-CTTA-TTCTTAGGAGATTACGTTGACCGTGGGAAGCAGAG 317
Query 502 TCTTGAAACAATATGTC-TCTTACTAGCTTACAAGATCAAATACCCTGGCAACTTTTTTC 560
| | || || || |||| || | || |||||||||||||||||||| | ||||||||||
Sbjct 318 TATGGAGACTATTTGTCTTC-TGCTTGCTTACAAGATCAAATACCCCGAAAACTTTTTTC 376
Query 561 TACTAAGGGGAAACCACGAATGTGCTTCTATCAATAGGATATATGGATTTTATGATGAGT 620
| |||| |||||||| || ||||| ||||| || || || || ||||| ||||| || |
Sbjct 377 TTTTAAGAGGAAACCATGAGTGTGCATCTATTAACAGAATCTACGGATTCTATGACGAAT 436
Query 621 GTAAAAGGAGGTTCAATGTGAGAG-TATGGAAGGTTTTTACTGATTGTTTTAACTGCCTT 679
||||| | ||||||||||||| || | ||||| || ||||| || ||||||||| ||
Sbjct 437 GTAAACGAAGGTTCAATGTGA-AGCTCTGGAAAGTATTTACAGACACTTTTAACTGTCTC 495
Query 680 CCTGTTGCGGC-GCTTATAGATGACAAA-AT-ATTGTGTATGCACGGTGGACTTTCGCCG 736
||||| || || | | ||||| || ||| || || ||||||||||||||||| || ||
Sbjct 496 CCTGTGGCTGCTG-TCATAGACGA-AAAGATCCTT-TGTATGCACGGTGGACTATCTCCC 552
Query 737 GATCTTGA-CCATTTGGATGAGATT-AGAAAC-TTGCCGAGACCAACT-ATGATTCCGGA 792
||| |||| | || |||| ||||| || ||| | | | | |||| | ||| |||| |
Sbjct 553 GAT-TTGATCAATGTGGAACAGATTAAG-AACATAG-AGCGTCCAATTGATG-TTCC--A 606
Query 793 TAC-CGGGCTT-CTCTGTGA-TTTGCTCTGGTCTGATCCTGGGAAAGATGTTAAAGGATG 849
|| | || || |||||||| || || |||||||||||| | ||||| | ||||| ||
Sbjct 607 GACTCTGGTTTGCTCTGTGACCTT-CTTTGGTCTGATCCTAGTAAAGACATCAAAGGCTG 665
Query 850 GGGAATGAATGATAGAGGTGTTTCATACACCTTTGGTC-CAGATAAAGTTTCCGAGTTTC 908
||| ||||||||| | ||||| || ||||| ||||| | | || |||||| | |||||||
Sbjct 666 GGGGATGAATGATCGTGGTGTCTCTTACACTTTTGG-CGCTGACAAAGTTGCTGAGTTTC 724
Query 909 TTACGAAACATGATTTAGATCTT-GTGTGTCGTGCCCATCAGGTCGTGGAGGATGGGTAT 967
| | ||| ||||| | ||| || || ||||||||||| ||||| |||||||||||||||
Sbjct 725 TAATAAAAAATGATATGGAT-TTAGTCTGTCGTGCCCACCAGGTTGTGGAGGATGGGTAT 783
Query 968 GAGTTCTTTGCTGATAGACAACTTGTGACGGTGTTTTCAGCTCCTAACTACTGTGGTGAA 1027
|||||||||||||||||||| |||||||| ||||||| ||||| |||||||||||||||
Sbjct 784 GAGTTCTTTGCTGATAGACAGCTTGTGACTATGTTTTCTGCTCCAAACTACTGTGGTGAA 843
Query 1028 TTTGATAATGCTGGTGCGAT-GATGAGCGTGGACGAGAACCTTA-TGTGCTCGTTTC-AG 1084
||||| ||||| ||||| || |||||| |||||||| || ||| ||||||| |||| |
Sbjct 844 TTTGACAATGCGGGTGC-ATTGATGAGTGTGGACGA-AAGTTTAATGTGCTC-TTTCCAA 900
Query 1085 ATT-TTGAAGCC 1095
||| || |||||
Sbjct 901 ATTCTT-AAGCC 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5