BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39930.1
Length=2718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483030 jgi|Araly1|483030|fgenesh2_kg.4__2090__AT2G39930.1 4189 0.0
> Ahg483030 jgi|Araly1|483030|fgenesh2_kg.4__2090__AT2G39930.1
Length=2661
Score = 4189 bits (2268), Expect = 0.0
Identities = 2551/2684 (95%), Gaps = 33/2684 (1%)
Strand=Plus/Plus
Query 1 ACACTTCGTCGTCTCTCTTTCACTACTTTTGAGAAGCTCTCTTCTTCGAGCTTCCATGGA 60
||||||| |||||||||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 1 ACACTTCTTCGTCTCTCTTTCACTCCTTTTG-GAAGCTCTCTT-TTCGAGCTTCCATGGA 58
Query 61 TGCAATCAAATGCAGTTCCAGTTTCCTCCATCACACCAAGCTCAACACTCTCTTCTCTAA 120
| | |||||||||||||||||||| || |||| |||||||||||||| ||||||||||||
Sbjct 59 TTCCATCAAATGCAGTTCCAGTTTTCTTCATCGCACCAAGCTCAACATTCTCTTCTCTAA 118
Query 121 TCACACCTTTCCTAAAATCTCCGCTCCCAATTTCAAGCCCCTCTTCCGTCCGATTTCGAT 180
||| ||||||||||||| ||||| ||||||||||||| |||||||| || ||||||||
Sbjct 119 CCACGCCTTTCCTAAAATATCCGCACCCAATTTCAAGCGTCTCTTCCGACCAATTTCGAT 178
Query 181 TTCCGCAAAGGAC-AGAAGAAGCAACGAAGCTGAAAATATCGCCGTAGTAGAGAAACCTC 239
||||||||||| | ||| |||||| ||||||||||| |||||||||||||||||||||||
Sbjct 179 TTCCGCAAAGG-CTAGACGAAGCAGCGAAGCTGAAAGTATCGCCGTAGTAGAGAAACCTC 237
Query 240 TTAAATCAGATAGATTTTTTATCTCCGATGGACTTCCTTCTCCATTCGGACCCACCGTCA 299
|||||||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||
Sbjct 238 TTAAATCAGAGAGATTTCTCGTCTCCGATGGACTTCCTTCTCCATTCGGAGCCACTGTCA 297
Query 300 GAGACGACGGCGTCAATTTCTCTGTTTACTCTACAAACTCCGTTTCCGCTACCATCTGCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAGACGACGGCGTCAATTTCTCTGTTTACTCTACAAACTCCGTTTCCGCTACCATCTGCT 357
Query 360 TGATTTCTCTCTCCGATCTCCGTCAGAACAAAGTGACGGAGGAGATTCAGCTTGATCCAT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 358 TGATTTCTCTCTCCGATCTCCGTCAGAACAAAGTGACGGAGGAGATTCAGCTAGATCCAT 417
Query 420 CAAGGAATAGAACTGGCCATGTTTGGCATGTGTTCTTGAGAGGAGATTTCAAAGATATGT 479
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 418 CAAGAAATAGAACCGGCCATGTTTGGCATGTGTTCTTGAGAGGGGATTTCAAAGATATGT 477
Query 480 TGTATGGTTATAGATTTGATGGCAAGTTTTCTCCTGAAGAAGGTCATTATTATGATTCCT 539
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGTATGGTTACAGATTTGATGGCAAGTTTTCTCCTGAAGAAGGTCATTATTATGATTCCT 537
Query 540 CCAACATTTTATTGGATCCTTACGCAAAGGCAATTATAAGCAGAGATGAGTTTGGAGTTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CCAACATTTTATTGGATCCTTACGCAAAGGCAATTATAAGCAGAGATGAGTTTGGAGTTT 597
Query 600 TGGGACCTGATGATAATTGTTGGCCTCAAATGGCGTGTATGGTACCCACTCGTGAGGAAG 659
||||||||||||| |||||||||||||||||||||| |||||| ||||||||||| ||||
Sbjct 598 TGGGACCTGATGAAAATTGTTGGCCTCAAATGGCGTCTATGGTTCCCACTCGTGATGAAG 657
Query 660 AGTTTGATTGGGAAGGGGATATGCATCTGAAGCTTCCACAGAAAGATCTTGTTATATATG 719
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 658 AGTTTGATTGGGAAGGGGATATGCATCTGAAGCTTCAACAGAAGGATCTTGTTATATATG 717
Query 720 AAATGCATGTGCGAGGTTTTACAAGGCATGAGTCTAGTAAAATTGAATTCCCTGGCACAT 779
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 718 AAATGCATGTGCGAGGTTTCACAAGGCATGAATCTAGCAAAATTGAATTCCCTGGCACAT 777
Query 780 ACCAGGGTGTTGCAGAGAAGCTTGACCATTTGAAGGAGCTTGGGATAAATTGTATAGAAT 839
|||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 778 ACCAAGGTGTTGCAGAGAAGCTTGACCATTTGAAGGAGCTTGGTATAAATTGCATAGAAT 837
Query 840 TAATGCCATGTCACGAGTTTAATGAGCTGGAGTATTACAGCTACAATACGATTTTGGGAG 899
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 838 TAATGCCATGCCACGAGTTTAATGAGCTGGAGTATTACAGCTACAATACGATTCTGGGAG 897
Query 900 ACCACAGGGTAAATTTTTGGGGTTACTCTACCATTGGGTTCTTCTCGCCCATGATCAGAT 959
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 898 ACCACAGGGTAAATTTTTGGGGTTACTCGACCATTGGGTTCTTCTCGCCCATGATCAGAT 957
Query 960 ACGCATCAGCAAGCTCTAACAATTTTGCTGGACGAGCCATAAATGAATTCAAAATTCTTG 1019
|||| || |||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 958 ACGCGTCGGCAAATTCTAACAATTTTGCTGGAAGAGCCATAAATGAGTTCAAAATTCTTG 1017
Query 1020 TTAAGGAGGCACATAAACGAGGAATTGAGGTAATCATGGATGTCGTCTTGAACCACACAG 1079
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1018 TTAAAGAAGCACATAAACGAGGAATTGAGGTAATCATGGATGTCGTGTTGAACCACACAG 1077
Query 1080 CCGAAGGGAATGAAAAAGGGCCCATTTTCTCATTTAGAGGAGTTGATAACAGTGTCTATT 1139
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CTGAAGGGAATGAAAAAGGGCCCATTTTCTCATTTAGAGGAGTTGATAACAGTGTCTATT 1137
Query 1140 ACATGCTTGCTCCAAAGGGCGAGTTCTATAATTATTCAGGCTGTGGTAATACATTCAACT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ACATGCTTGCTCCAAAGGGCGAGTTCTATAATTATTCAGGCTGTGGTAATACATTCAACT 1197
Query 1200 GCAATCATCCTGTGGTGCGTCAATTCATATTGGATTGCCTGAGATATTGGGTTACAGAAA 1259
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1198 GCAATCATCCCGTGGTGCGTCAATTCATAGTGGATTGCCTGAGATATTGGGTTACAGAAA 1257
Query 1260 TGCATGTTGACGGCTTCCGCTTTGATCTTGGTTCAATCATGTCAAGGAGCAGCAGCCTTT 1319
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TGCATGTCGACGGCTTCCGCTTTGATCTTGGTTCAATCATGTCAAGGAGCAGCAGCCTTT 1317
Query 1320 GGGATGCAGCCAATGTTTACGGGGCTGATGTAGAAGGTGACTTGCTCACAACTGGTACTC 1379
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 1318 GGGATGCAGCCAATGTTTATGGGGCTGATGTAGAAGGTGACTTGCTGACCACTGGTACTC 1377
Query 1380 CTATTAGCTGCCCTCCAGTAATTGACATGATAAGTAATGATCCAATACTCCGCGGTGTTA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CTATTAGCTGCCCTCCAGTAATTGACATGATAAGTAATGATCCAATACTCCGCGGTGTTA 1437
Query 1440 AGCTAATAGCTGAAGCATGGGATGCGGGTGGGCTGTACCAAGTTGGCATGTTTCCACACT 1499
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1438 AGCTAATAGCTGAAGCATGGGATGCGGGTGGGCTATACCAAGTTGGCATGTTTCCACACT 1497
Query 1500 GGGGTATTTGGTCTGAGTGGAATGGAAAGTTTCGGGATGTTGTGAGACAGTTCATAAAAG 1559
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1498 GGGGTATTTGGTCTGAGTGGAATGGAAAGTTCCGGGATGTTGTGAGACAGTTCATAAAAG 1557
Query 1560 GCACCGATGGCTTTTCTGGTGCTTTTGCTGAATGTCTCTGTGGAAGCCCAAATCTGTACC 1619
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1558 GCACCGATGGCTTTTCTGGTGCTTTTGCTGAATGTCTTTGTGGAAGCCCAAATTTGTACC 1617
Query 1620 AGGGAGGTAGGAAACCTTGGCACAGCATCAATTTTATATGTGCGCATGATGGTTTTACGT 1679
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AGGGAGGTAGGAAACCTTGGAACAGCATCAATTTTATATGTGCGCATGATGGTTTTACGT 1677
Query 1680 TGGCAGATTTAGTAACTTACAACAATAAGAATAACTTGGCAAATGGAGAAGAGAATAATG 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 TGGCAGATTTAGTAACTTACAACAATAAGAATAACTTGGCAAATGGAGAAGAGAATAATG 1737
Query 1740 ATGGAGAGAATCACAATTACAGCTGGAACTGTGGAGAGGAGGGAGACTTTGCGAGTATCT 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 ATGGAGAGAATCACAATTACAGCTGGAACTGTGGAGAGGAGGGAGACTTTGCGAGTATCT 1797
Query 1800 CGGTGAAGAGACTAAGGAAACGACAGATGCGGAATTTCTTTGTTTCCCTCATGGTTTCCC 1859
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1798 CGGTGAAGAGACTAAGGAAACGACAGATGCGAAATTTCTTTGTTTCCCTCATGGTTTCCC 1857
Query 1860 AAGGTGTCCCAATGATTTACATGGGAGATGAATATGGCCATACTAAAGGGGGAAACAACA 1919
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1858 AAGGTGTCCCAATGATCTACATGGGAGATGAATATGGCCATACGAAAGGGGGAAACAACA 1917
Query 1920 ACACGTATTGCCATGACAACTATATGAACTATTTTCGGTGGGATAAAAAGGAAGAAGCAC 1979
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 ACACTTATTGCCATGACAACTATATGAACTATTTTCGGTGGGATAAAAAGGAAGAAGCAC 1977
Query 1980 ATTCTGACTTCTTCAGATTCTGCCGTATTCTTATCAAGTTTCGTGATGAATGTGAATCAC 2039
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1978 ATTCTGACTTCTTCAGATTCTGCCGTCTTCTTATCAAGTTTCGTGATGAATGTGAATCAC 2037
Query 2040 TTGGCTTGAATGATTTCCCAACAGCAAAGCGTCTGCAGTGGCATGGTCTTGCTCCTGAGA 2099
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 TTGGCCTGAATGATTTCCCAACAGCAAAGCGTCTGCAGTGGCATGGTCTTGCTCCTGAGA 2097
Query 2100 TCCCAAATTGGTCTGAAACAAGTCGATTTGTTGCATTTTCACTGGTCGATTCTGTGAAGA 2159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 TCCCAAATTGGTCTGAAACAAGTCGATTTGTTGCATTTTCACTGGTCGATTCTGTGAAGA 2157
Query 2160 AAGAAATCTATGTGGCCTTCAACACCAGTCATTTAGCCACACTTGTTTCGCTACCGAATA 2219
||||||||||||||| |||||||| ||||||||||||||||||||||| || || || |
Sbjct 2158 GAGAAATCTATGTGGCTTTCAACACTAGTCATTTAGCCACACTTGTTTCTCTGCCTAACA 2217
Query 2220 GGCCAGGATACCGATGGGAGCCATTTGTAGACACGAGCAAACCGAGCCCTTACGACTGCA 2279
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2218 GGCCTGGATACCGATGGGAGCCATTTGTAGACACGAGCAAACCGAGCCCATACGACTGCA 2277
Query 2280 TAACACCGGATCTCCCAGAGAGAGAAACGGCGATGAAGCAGTATAGGCACTTCTTAGATG 2339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 TAACACCGGATCTCCCAGAGAGAGAAACGGCGATGAAGCAGTATAGGCACTTCTTAGATG 2337
Query 2340 CAAATGTGTACCCAATGCTCAGTTACTCATCCATCATTCTCCTTCTTTCACCAATTAAAG 2399
||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| |||
Sbjct 2338 CAAATATGTACCCAATGCTCAGTTACTCTTCCATCATCCTCCTTCTTTCACCAATTGAAG 2397
Query 2400 ACCCCTGAGTTTGCGTGATTCC--TCCAAAAGCGTATTAGACAAAATCACAACATATGAA 2457
|| |||||||||||||||| || |||||||| | ||||| ||| |||||| |||||
Sbjct 2398 ACACCTGAGTTTGCGTGATCCCCCTCCAAAAGTGCGTTAGAGAAA-TCACAAAATATGGG 2456
Query 2458 GGAATCTTCTCAAATGTGAA-TGAGATGCATAT-ACAGACAACTATTTCGTTACCT-ATA 2514
|||||||||||||||||||| |||||||||||| || ||||||||||||||||||| | |
Sbjct 2457 GGAATCTTCTCAAATGTGAAATGAGATGCATATTAC-GACAACTATTTCGTTACCTGA-A 2514
Query 2515 TAATG-TATTATAGTAAAGGTTCCTTTTATGGTTAGAAGAATCTGAATGGGGTACCTTTG 2573
||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 2515 TAATGATATTATTGTAAAGGTTC-TTTTATGTTTAGAAGAATCTGAATGGGGTACCTTTG 2573
Query 2574 GTCGGCTTCAGATATGCCCACTCATTGTTAATAGATTCCTTTATCGTCTGTTAATCCAAT 2633
||||| |||| | || | | ||||||||||||||| |||||||||| |||
Sbjct 2574 GTCGGTTTCA--T-TG-----T-A-----AATAGATTCCTTTATTGTCTGTTAATTTAAT 2619
Query 2634 CAAAAGCTT-GTTACAT-CGTTTTCAGAA-TTCGTGTAAGAACA 2674
|||| |||| ||||||| ||||||| ||| ||||||||||||||
Sbjct 2620 CAAA-GCTTTGTTACATGCGTTTTC-GAAATTCGTGTAAGAACA 2661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102538939540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5