BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39940.1 Length=2396 Score E Sequences producing significant alignments: (Bits) Value Ahg483031 jgi|Araly1|483031|fgenesh2_kg.4__2091__AT2G39940.1 3083 0.0 > Ahg483031 jgi|Araly1|483031|fgenesh2_kg.4__2091__AT2G39940.1 Length=2191 Score = 3083 bits (1669), Expect = 0.0 Identities = 1992/2138 (93%), Gaps = 61/2138 (3%) Strand=Plus/Plus Query 140 ctcACTCTGGTGGTTATGTGTGGATCTGCGACCTCGATTTCAATTCGAAGTCGTCGGTTT 199 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTCACTCTCGTGTTTATGTGTGGATCTGCGACCTCGATTTCAATTCGAAGTCGTCGGTTT 120 Query 200 CTTCTCTAAATCGAATCTTTCCAGGATTCGtttgtttttttcttttgtttttttttCGAT 259 |||| |||||||||| | | || || |||||||| || |||||| Sbjct 121 CTTCACTAAATCGAA----T-C-----TC--TT-TTTTTTTC---------TTCTTCGAT 158 Query 260 CCGATGGAGGATCCTGATATCAAGAGGTGTAAATTGAGCTGCGTCGCGACGGTTGATGAT 319 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 159 CCGATGGAGGATCCTGATATCAAGAGGTGTAGATTGAGCTGCGTCGCGACGGTTGATGAC 218 Query 320 GTCATCGAGCAAGTCATGACCTATATAACTGACCCGAAAGATCGCGATTCGGCTTCTTTG 379 |||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||| Sbjct 219 GTCATCGAGCAAGTCATGACGTATATAACCGACCCCAAAGATCGCGATTCGGCGTCTTTG 278 Query 380 GTGTGTCGGAGATGGTTCAAGATTGATTCCGAGACGAGAGAGCATGTGACTATGGCGCTT 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 279 GTGTGTCGGAGATGGTTCAAGATTGATTCCGAGACGAGAGAGCATGTGACTATGGCGCTT 338 Query 440 TGCTACACTGCGACGCCTGATCGTCTTAGCCGTCGATTCCCGAACTTGAGGTCGCTCAAG 499 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 339 TGCTACACTGCGACGCCTGATCGTCTTAGCCGTCGATTTCCGAACTTGAGGTCGCTCAAG 398 Query 500 CTTAAAGGCAAGCCTAGAGCAGCTATGTTTAATCTGATCCCTGAGAACTGGGGAGGTTAT 559 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 399 CTTAAAGGCAAGCCTAGAGCAGCTATGTTTAATCTCATCCCGGAGAACTGGGGAGGATAT 458 Query 560 GTTACTCCTTGGGTTACTGAGATTTCTAACAAC-CTTAGGCAGCTCAAATCGGTGCACTT 618 ||||||||||||||||||||||||||||| | | |||| ||||||||||||||| ||||| Sbjct 459 GTTACTCCTTGGGTTACTGAGATTTCTAA-ATCGCTTAAGCAGCTCAAATCGGTTCACTT 517 Query 619 CCGACGGATGATTGTCAGTGACTTAGATCTAGATCGTTTAGCTAAAGCTAGAGCAGATGA 678 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 518 CCGACGGATGATTGTCAGTGACTTAGATCTGGATCGTTTAGCTAAAGCCAGAGCAGATGA 577 Query 679 TCTTGA-GACTTTGAAGCTAGACAAGTGTTCTGGTTTTACTACTGATGGACTTTTGAGCA 737 |||||| | |||||||||| || ||||| |||||||| |||||||||||||||||||||| Sbjct 578 TCTTGAAG-CTTTGAAGCTCGATAAGTGCTCTGGTTTCACTACTGATGGACTTTTGAGCA 636 Query 738 TCGTTACACACTGCAGGAAAATAAAAACTTTGTTAATGGAAGAGAGTTCTTTTAGTGAAA 797 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 637 TCGTTACACACTGCAGGAAAATAAAAACGTTGTTAATGGAAGAGAGTTCTTTTATTGAAA 696 Query 798 AGGATGGTAAGTGGCTTCATGAGCTTGCTCAGCACAACACATCTCTTGAGGTTTTAAACT 857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 697 AGGATGGTAAGTGGCTTCATGAGCTTGCTCAGCACAACACATCTCTTGAGGTTTTAAACT 756 Query 858 TCTACATGACGGAGTTTGCCAAAATCAGTC-CCAAAGACTTGGAAACCATAGCTAGAAAT 916 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 757 TCTACATGACGGAGTTTGCCAAAATCAG-CGCCAAAGACTTGGAAACCATAGCTAGAAAT 815 Query 917 TGCCGCTCTCTGGTATCTGTGAAGGTCGGTGACTTTGAGATTTTGGAACTAGTTGGGTTC 976 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 816 TGCCGCTCTCTGGTTTCTGTGAAGGTCGGTGACTTTGAGATTTTGGAACTAGTTGGGTTC 875 Query 977 TTTAAGGCTGCAGCTAATCTTGAAGAATTTTGTGGTGGCTCCTTGAATGAGGATATTGGA 1036 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 876 TTTAAGGCCGCAGCTAATCTTGAAGAATTTTGTGGTGGCTCCCTGAATGAGGATATTGGA 935 Query 1037 ATGCCTGAGAAGTACATGAATCTGGTTTTTCCCCGAAAACTATGTCGGCTTGGTCTCTCT 1096 ||||||||||||||||||||||||||||| |||||||| ||||| || || || |||||| Sbjct 936 ATGCCTGAGAAGTACATGAATCTGGTTTTCCCCCGAAAGCTATGCCGTCTAGGCCTCTCT 995 Query 1097 TACATGGGACCTAATGAAATGCCAATACTATTTCCATTCGCGGCCCAAATCCGAAAGCTG 1156 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 996 TATATGGGACCTAATGAAATGCCAATACTATTTCCATTCGCGGCCCAGATCCGAAAGCTG 1055 Query 1157 GATTTGCTTTATGCATTGCTAGAAACTGAAGACCATTGTACGCTTATCCAAAAGTGTCCT 1216 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1056 GATTTGCTTTATGCATTGCTAGAAACTGAAGACCATTGTACGCTAATCCAAAAGTGTCCT 1115 Query 1217 AATTTGGAAGTTCTCGAGACAAGGAATGTAATCGGAGATAGGGGTCTAGAGGTCCTTGCA 1276 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 1116 AATTTGGAAGTTCTCGAGACAAGGAATGTAATTGGAGATAGGGGTCTAGAGGTTCTTGCA 1175 Query 1277 CAGTACTGTAAGCAGTTGAAGCGGCTGAGGATTGAACGCGGTGCAGATGAACAAGGAATG 1336 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1176 CAGTACTGTAAGCAGTTGAAGCGGCTGAGGATTGAACGGGGTGCAGATGAACAAGGAATG 1235 Query 1337 GAGGACGAAGAAGGCTTAGTCTCACAAAGAGGATTAATCGCTTTGGCTCAGGGCTGCCAG 1396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1236 GAGGACGAAGAAGGCTTAGTCTCACAAAGAGGATTAATCGCTTTGGCTCAGGGCTGCCAG 1295 Query 1397 GAGCTAGAATACATGGCGGTGTATGTCTCAGATATAACTAACGAATCTCTTGAAAGCATA 1456 ||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| Sbjct 1296 CAGCTAGAATACATGGCGGTGTATGTCTCAGACATTACGAACGAATCTCTTGAAAGCATA 1355 Query 1457 GGCACATATCTGAAAAACCTCTGTGACTTCCGCCTTGTCTTACTCGACCGGGAAGAAAGG 1516 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1356 GGCATATATCTGAAAAACCTCTGTGACTTCCGCCTTGTCTTACTCGACCGGGAAGAAAGG 1415 Query 1517 ATTACAGATCTGCCACTGGACAACGGAGTCCGATCTCTTTTGATTGGATGCAAGAAACTC 1576 ||||||||| | ||| ||||||||||||| ||||| || ||||||||||||||||||||| Sbjct 1416 ATTACAGATTTACCATTGGACAACGGAGTGCGATCCCTCTTGATTGGATGCAAGAAACTC 1475 Query 1577 AGACGATTTGCATTCTATCTGAGACAAGGCGGCTTAACCGACTTGGGCTTAAGCTACATC 1636 ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1476 AGACGGTTTGCTTTCTATCTCAGACAAGGCGGCTTAACCGACTTGGGCTTAAGCTACATC 1535 Query 1637 GGACAGTACAGTCCAAACGTGAGATGGATGCTGCTGGGTTACGTAGGTGAATCAGATGAA 1696 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1536 GGACAATACAGTCCAAATGTGAGATGGATGCTGCTGGGTTACGTAGGTGAATCGGATGAA 1595 Query 1697 GGTTTAATGGAATTCTCAAGAGGCTGTCCAAATCTACAGAAGCTAGAGATGAGAGGTTGT 1756 ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||| Sbjct 1596 GGTTTAATGGAATTCTCGAGAGGTTGTCCGAATCTACAGAAGCTAGAGATGAGAGGCTGT 1655 Query 1757 TGCTTCAGTGAGCGAGCAATCGCTGCAGCGGTTACAAAATTGCCTTCACTGAGATACTTG 1816 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1656 TGCTTCAGCGAGCGAGCAATCGCTGCAGCAGTTACAAAATTGCCTTCACTGAGATATTTG 1715 Query 1817 TGGGTACAAGGTTACAGAGCATCGATGACGGGACAAGATCTAATGCAGATGGCTAGACCG 1876 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1716 TGGGTACAAGGTTACAGAGCATCAATGACGGGACAAGATCTAATGCAGATGGCTAGACCG 1775 Query 1877 TACTGGAACATCGAGCTGATTCCATCAAGAAGAGTCCCGGAAGTGAATCAACAAGGAGAG 1936 |||||||||||||||||||| ||||| |||| ||| |||||||||||||| | ||||||| Sbjct 1776 TACTGGAACATCGAGCTGATACCATCGAGAAAAGTACCGGAAGTGAATCAGCTAGGAGAG 1835 Query 1937 ATAAGAGAGATGGAGCATCCGGCTCATATATTGGCTTACTACTCTCTGGCTGGCCAGAGA 1996 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1836 ATAAGAGAGATGGAGCATCCGGCTCATATATTGGCTTACTACTCTCTGGCTGGTCAGAGA 1895 Query 1997 ACAGATTGTCCAACAACTGTTAGAGTCCTGAAGGAGCCAATATGATATG-ACCCAAAAAA 2055 ||||||||||||||||||||||||||||||| |||||||||||||| || ||| |||||| Sbjct 1896 ACAGATTGTCCAACAACTGTTAGAGTCCTGAGGGAGCCAATATGAT-TGGACC-AAAAAA 1953 Query 2056 CAGGTTTGTATATAAAGATTTTTAGTCTCGAGTTTTGGGGTTTCCACAAACTGTGTACTA 2115 ||||||||||||||||||||| |||| ||||||||||||||||| || || || Sbjct 1954 CAGGTTTGTATATAAAGATTTGTAGTGTCGAGTTTTGGGGTTTCTT-----TG-GTTCT- 2006 Query 2116 TACTACTTTGGTTCtttttttGTTTCATGTTGTGTCGTC-GATGTTTTTGGGAGATTACA 2174 | || ||| || | |||||||||| ||||| |||||||||||||||||||| Sbjct 2007 T--TA-TTT--TT--------GATTCATGTTGTATCGTCAGATGTTTTTGGGAGATTACA 2053 Query 2175 TAGAGTCAGTCTTGTTTGTTGTATGGTCATTACTTCTTTATTTTTCCTCAGGGGTCTGTT 2234 ||||||| | | |||||| |||||||| |||||||||||||||| ||||||||||| Sbjct 2054 TAGAGTC--T-T-GTTTGT---ATGGTCATCACTTCTTTATTTTTCCACAGGGGTCTGTC 2106 Query 2235 TACT-TTAATTTCTTTAATAAAACCCCGAAGATTTTGA 2271 |||| || |||||||||||||||||| |||||||||| Sbjct 2107 TACTCTTC-TTTCTTTAATAAAACCCCAAAGATTTTGA 2143 Score = 80.5 bits (43), Expect = 5e-14 Identities = 51/54 (94%), Gaps = 3/54 (6%) Strand=Plus/Plus Query 2339 TTT-ATTTGTGGTTGTGATTGTTTTGATAACATTAGTAAAA-AGGCAAATAATA 2390 ||| ||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 2139 TTTGATTTGTGGTTGTGATTGTTTTGATAACATTAGTAAAATAG-CAAATAATA 2191 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90273880650 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5