BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G39950.1 Length=2412 Score E Sequences producing significant alignments: (Bits) Value Ahg483032 jgi|Araly1|483032|fgenesh2_kg.4__2092__AT2G39950.1 3323 0.0 > Ahg483032 jgi|Araly1|483032|fgenesh2_kg.4__2092__AT2G39950.1 Length=2302 Score = 3323 bits (1799), Expect = 0.0 Identities = 2072/2199 (94%), Gaps = 38/2199 (2%) Strand=Plus/Plus Query 230 caatttctggatcgagtttttggtttCTCTGACAAGTTACCGATACGATATTTGATATGG 289 |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 126 CAATTTCTGGATCGAG-TTTTGGTTTCTCTGACAAGTTACCGATCCGATATTTGATATGG 184 Query 290 CCGATTCTAGGAAGCGAGATACCGGAGACGATCATCAGCACCGTGATGATCAACCAAATG 349 ||||||||||||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct 185 CCGATTCTAGGAAACGAGATACCGGAGACG---AT---CACCGTGATGATCAGCCAAATG 238 Query 350 ACGGTGATGATTTGTCTATTTCGTCGTCGACGACTGATGACTCTCAATTTAATGGAACCG 409 ||| | || | | | || |||||||| |||||| |||| |||||||||| ||| Sbjct 239 ACGACGGCGA---G--GA--T-GT-GTCGACGATTGATGATTCTCGATTTAATGGATCCG 289 Query 410 AAGGAGAGAATGAATTGACGAGGATTGAGAGTAGAGTTTCAGATCCGTTGACTGATGCAA 469 || |||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 290 AAAGAGATAATCAATCGACGAGGATCGAGAGTAGAGTTTCAGATCCGTTGACTGATGCAA 349 Query 470 CCGGAGGAGACTTTTTGGTTGGAGAGGATAGGGTTTTACGGTGGTTACAAGCTTTGGACA 529 |||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| | Sbjct 350 CCGGAGGAGACTTTTTGGTTGGTGAGGATAGGGTTTTGCGGTGGTTGCAAGCTTTGGATA 409 Query 530 TGCAAGTTATGGGAGCTTGTCGAGGTGATGAGAGATTGAAGCCGTTGTTGAAGCTTAACG 589 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 410 TGCAAGTTATGGGAGCTTGTCGAGGTGACGAGAGATTGAAGCCGTTGTTGAAGCTTAACG 469 Query 590 TTTCTAATGGAATGGCTGAAGATCGATTGCTTGCGCATCTTAGCCAGCACTTCGAGCCTG 649 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | Sbjct 470 TTTCTAATGGAATGGCTGAAGATCGATTGCTTGCCCATCTTAGTCAGCACTTCGAGCCGG 529 Query 650 CGGAAATTGGTATGCTGGCTAGATGTTTTTGCATACCTCTGGTTTCGGTTCGCGTCGGGA 709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 530 CGGAAATTGGTATGCTGGCTAGATGTTTTTGCATACCTCTGGTTTCGGTTCGCGTCGGGA 589 Query 710 AGATTATA-AAGGAAGGGATTCTAATGCGCCCCACTCCCATAAGGGGTAACCTGAGCCTT 768 |||||| | |||||||| | ||||||||||||||||||||||||||||||| |||||||| Sbjct 590 AGATTA-AGAAGGAAGGAACTCTAATGCGCCCCACTCCCATAAGGGGTAACTTGAGCCTT 648 Query 769 ATGGTCTTGCCAACATCTGACTTGAGACTCTCATTTATTGGAGACAATGGTCATTCAGAA 828 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 649 ATGGTCTTGCCAACATCTGACTTGAGACTCTCATTTATCGGAGACAATGGTCATTCAGAA 708 Query 829 CAACTCTTTACCTATACCAGCAAATCTCAGTGCTCTGCGGTGTCAATTGAGGAGATAACT 888 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 709 CAACTCTTTACGTATACCAGCAAATCTCAGTGCTCTGCGGTGTCAATTGAGGAGATAACT 768 Query 889 GTGGACAGCTCTGGTAGATCTTTTGTTATAAGGATCGCAAATGGCAATGCTTTTTACTAT 948 | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 769 GCGGACAGCTCTGGTAGATCTTTTGTTATAAGGATCGCAGATGGCAATGCTTTTTACTAT 828 Query 949 TGGTGCTCAGAGAAGTCAAAACTTCTGGGAACTGAATTGCGTAGGAAGATGAAAGACTTG 1008 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 829 TGGTGCTCAGAGAAGTCAAAACTTCTGGGAACTGAATTGCGTAGGAAGATGAAAGACTTG 888 Query 1009 ATCAAGAAGAAGCCATCAATCTCAGAATTAACTGGAATTGAAGAATCACGTCTTGGCTCT 1068 ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| Sbjct 889 ATCAAGAAGAAGCCATCAATCTCGGAACTAACTGGAATTGAAGAATCACGACTTGGCTCT 948 Query 1069 GTTGCTTCTCATCTCCGTTTGTATCTCATGGGTTCAGTGGTGCCTAACATCAAAGGTTGT 1128 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| Sbjct 949 GTTGCTTCTCATCTCCGTTTGTATCTTATGGGATCAGTGGTACCTAACATCAAAGGTTGT 1008 Query 1129 CAGGTCCCATCTCCTGATTCATCATCATCTTCTGGCTTTTCTGAAACAGCTGA-T--TCC 1185 | |||| |||||||||||||||||||||||||||||| ||||||||||||||| | ||| Sbjct 1009 CCGGTCTCATCTCCTGATTCATCATCATCTTCTGGCTCTTCTGAAACAGCTGATTCCTCC 1068 Query 1186 TCCTCGAGTGCATCATCAAAATCTCTTAGAGCACGCCACTGTGGGACTCAACAGACAAAG 1245 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1069 TCCTCGAGTGCATCCTCAAAATCTCTTAGAGCACGCCACGGTGGGACTCAACAGACAAAG 1128 Query 1246 ACCCAAGGAAGCCTCAGCCCTAGAGCAAGCTCCTTCAAAGAAAACACACTGAGAAA-TGC 1304 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1129 ACTCAAGGAAGCCTCAGCCCTAGAGCAAGCTCCTTCAAAGAAAACACACTGAGAAACT-C 1187 Query 1305 TTCTCTACGTATCTCCTCTAGAGATAAATCAAAGGGACACAGTGAAGGCCATTTCTCAAT 1364 |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 1188 TTCTCTACGTATCTCCTCTAGAGATAAATCAAAGCGACGCAGTGAAGGCCATTTCTCAAT 1247 Query 1365 CTTTGATAA--T-TCATCCATTACCTCTATCCCCACCAATGTAGAGGGTTTTATCCAGTC 1421 ||||||||| | | ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1248 CTTTGATAATTTATTATCCATTACCTCTATCCCCACCAATGTAGAGGGTTTTCTCCAGTC 1307 Query 1422 AGAAGGAGAAGTTGAAGAAGCTACTGAGAATTATAATGGAATCAGACAAATTATTGCTTT 1481 ||||||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||||| Sbjct 1308 AGAAGGAGAAGGTGAAGAAGCCACTGAGAATAATAATGGAATCAGTCAAATTATTGCTTT 1367 Query 1482 TGAAGAAGCAGAGTCAACACCAAGTACAATGACCGGACCTCCCCCATTTCCTTTGAAGAT 1541 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1368 CGAAGAAGGGGAGTCAACACCAAGTACAATGACCGGACCTCCCCCATTTCCTTTGAAGAT 1427 Query 1542 GGGTCCACCAGTCTTTTCTCCTTATTATTGCTGGTGCCCTCCAACCACTTCATCGCTTCA 1601 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1428 GGGTCCACCAGTCTTTTCTCCTTATTATTGCTGGTGCCCTCCAACCACCTCATCGCTTCA 1487 Query 1602 CGCACCATCTGCCTCTTATCAGTTCCCTCCACTATCCATTGAGCTACCTTCCCTTCCGCC 1661 | |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1488 CTCACCATCTGCTTCTTATCAGTTCCCTCCACTATCCATCGAGCTACCTTCCCTTCCGCC 1547 Query 1662 ACTTTCCTCCTTATTACCAGCATCGGGATCAGATGGATTCTTGATCCCGTCATCACCGCT 1721 ||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| Sbjct 1548 TCTTTCTTCCTTGTTACCAGCATCAGGATCGGATGGGTTCTTGATCCCGTCATCACCGCT 1607 Query 1722 CGATCTCTCTGACATCCCTCCATTACCATTAGTCCACCACATACCCATTCCAGGCtcatc 1781 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1608 CGATCTCTCTGACATCCCTCCATTACCATTAGTCCACCACATACCCATTCCAGGCTCATC 1667 Query 1782 atcatcatcatcCCAGCAACAGATGATGATTCCTATAATGTGCGACCCTATTGTTCATAT 1841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1668 ATCATCATCATCCCAGCAACAGATGATGATTCCTATAATGTGCGACCCTATTGTTCATAT 1727 Query 1842 TCCAGTTATCGATATCTTCTCTTCAGGTCAAAGCTATCTGGTAAGCGCTGGACCCACCGG 1901 ||||||||||||||||| |||||| |||||| |||||||||| ||| ||||||||||||| Sbjct 1728 TCCAGTTATCGATATCTACTCTTCGGGTCAAGGCTATCTGGTTAGCACTGGACCCACCGG 1787 Query 1902 GATAATATCCACGGGCATCCCTCCGCTCCCAGTGGAGAATGATTCGCTGGTCGAGAAAGG 1961 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1788 GATGATATCCACGGGCATCCCTCCGCTCCCAGTGGAGAATGATTCGCTGGTCGAGAAAGG 1847 Query 1962 TGCAAGAGAAACACTACGATTGCTCATAAGCGGAGCCAATGCAACAACATCTACACCTTT 2021 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1848 TGCAAGAGAAACACTACGATTGCTCATAAGCGGAGCCAATGCAACAACCTCTACACCTTT 1907 Query 2022 GAACCATCATGGAAGCAGAGGTCTATACAGTGTGAGCCGGGATGTGAGTGGTGTGAGCTT 2081 |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 1908 GAACCACCATGGAAGCAGAGGTCTATACAGTGGGAGCCGGGACGTGAGTGGTGTGAGCTT 1967 Query 2082 GTTTGCACCTATTGGGTTGCAACAACCGAGTTCAGTTGAGGGAGGAGATGGTGGTGGTGA 2141 ||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 1968 GTTTGGACCTATTGGGCTGCAACAACCGAGTTCAGTTGACGGAGGAGATGGTGGTGGTGA 2027 Query 2142 GAGTGTGAGCTCAAGCGAAGCAGTGCCTGCGCCTCCCAGAGAGACTTCTGGTTAAttttt 2201 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2028 GAGTGTGAGCTCAGGCGAAGCAGTGCCTGCGCCTCCCAGAGAGACTTCTGGTTAGTTTTT 2087 Query 2202 ttGGTTCTTTGTAAGTGTGGT-CCGAGTTAA-GTGTATAGAAAACTCATCTCTCGCCTAG 2259 ||||||||||||||||||||| |||| || ||||||||||||||||||||||| ||| Sbjct 2088 TTGGTTCTTTGTAAGTGTGGTTCCGAAAAAAAGTGTATAGAAAACTCATCTCTCGGTTAG 2147 Query 2260 TTTTTGGTTTTGTTCAGCCCAAGTCTTTTGGTTTCAGGTGTAATTAGTCGGGTTTTTTGT 2319 || ||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| Sbjct 2148 TTCTTGGTTTTGTTCATC--AAGTCTTTTGGTT-CAGGTGTAATTAGTCGGGTTTTTTGT 2204 Query 2320 AGCTTGCTTAT-ATTACCTTT-GTTATTTCCGAGTTTCAAATGAAGCTAAGAAATACGAT 2377 ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 2205 AGCTTGCTTATTATTACCTTTTGTTATTTCCGAGTTTCAAAGGAAGCTAAGAAATACGAT 2264 Query 2378 CATAATAAAAAAGTT-CTT-TT--GCAGTATTCATTTTC 2412 ||||||||||| ||| ||| || |||||||| |||||| Sbjct 2265 CATAATAAAAA-GTTACTTATTTTGCAGTATTAATTTTC 2302 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90883324570 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5