BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39960.1
Length=920
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483034 jgi|Araly1|483034|fgenesh2_kg.4__2094__AT2G39960.1 1243 0.0
Ahg490079 jgi|Araly1|490079|fgenesh2_kg.6__3213__AT4G04200.1 556 7e-158
> Ahg483034 jgi|Araly1|483034|fgenesh2_kg.4__2094__AT2G39960.1
Length=753
Score = 1243 bits (673), Expect = 0.0
Identities = 727/753 (97%), Gaps = 3/753 (0%)
Strand=Plus/Plus
Query 1 TAGCTCCATCCAATATATCGTCTTCTT-C--CTCCTCGAACCAAAAACATCAGTCTCTCC 57
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1 TAGCTCCATCCAATATATCGTCTTCTTCCTTCTCCTCGAACCAAAAACATCAGTCTCTCC 60
Query 58 TAGTCTCAGCGCTCGTGAAAATCTGAAACTCTGCGTTCGAATTTTCGAAGAACATTAGAG 117
||||||| |||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 61 TAGTCTCTGCGCTCCTGAAAATCTCACACTCTGCGTTCGAATTTTCGAAGAACATTAGAG 120
Query 118 ATCTGGTATTATCTGGATCCGATCTGTTCACCATGGAGGAGAAGAAGACAGAATCAACCA 177
|||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||
Sbjct 121 ATCTGGTATTATCTGGATCCGATCTGGTCACCATGGAAGAGAAGAAGATAGAATCAACCA 180
Query 178 ACAAGAATGTTAAGAAGGCCAATCTATTGGACCACCACTCGATCAAGCACATCCTTGACG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 ACAAGAATGTTAAGAAGGCCAATCTATTGGACCACCACTCGATCAAGCACATCCTCGACG 240
Query 238 AATCCGTCTCCGATATCGTTACGAGCCGTGGCTATAAGGAGGATGTGAGATTGAGCAACC 297
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 AATCCGTCTCCGATATCGTTACGAGCCGTGGCTATAAGGAGGATGTGAGGTTGAGCAACC 300
Query 298 TCAAACTGATTTTGGGAACGATTATCATCGTTGTTGCTCTTGTTGCTCAATTCTACAACA 357
||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 301 TCAAATTGATTTTGGGAACGATAATCATCGTTGTTGCTCTTGTTGCTCAGTTCTACAACA 360
Query 358 AGAAATTCCCTGAGAACAGGGATTTTTTGATTGGATGCATCGCATTGTATGTAGTGTTGA 417
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 AGAAATTCCCTGAGAACAGGGATTTTTTAATTGGATGCATCGCATTGTATGTAGTGTTGA 420
Query 418 ATGCGGTGTTGCAGCTGATTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATC 477
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 421 ATGCGGTGTTGCAGCTGATTCTGTACACTAAGGAGAAGAATGCTATTCTGTTCACCTATC 480
Query 478 CTCCTGAGGGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTCT 537
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 481 CTCCTGAGGGATCATTCACCAGCACTGGCTTGGTGGTATCTTCAAAGTTGCCTAGATTCT 540
Query 538 CTGATCAGTACACTCTCACCATCGACAGTGCTGATCCAAAATCAATCTCAGCTGGGAAGT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGATCAGTACACTCTCACCATCGACAGTGCTGATCCAAAATCAATCTCAGCTGGGAAGT 600
Query 598 CAGTTCAGCTCACCAAAAGTGTCACCCAATGGTTCACGAAAGATGGAGTTCTTGTTGAGG 657
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAGTTGAGTTGACCAAAAGTGTCACCCAATGGTTCACGAAAGATGGAGTTCTTGTTGAGG 660
Query 658 GTTTATTCTGGAAAGACGTAGAAGCACTAATCAAGAACTATGCAGAAGAAGAACCAAAGA 717
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTTTATTCTGGAAAGACGTGGAAGCACTAATCAAGAACTATGCAGAAGAAGAACCAAAGA 720
Query 718 AGAAGAAATGATCATCTTCCAGAGAAATATATG 750
|||||||||||||||||| | ||||||||||||
Sbjct 721 AGAAGAAATGATCATCTTTCGGAGAAATATATG 753
> Ahg490079 jgi|Araly1|490079|fgenesh2_kg.6__3213__AT4G04200.1
Length=609
Score = 556 bits (301), Expect = 7e-158
Identities = 497/589 (84%), Gaps = 24/589 (4%)
Strand=Plus/Plus
Query 150 ATGGAGGAGAAGAAGACAGAATCAACCAAC-AAGAATGTTAAGAAGGCCAATC-TATTGG 207
||||| ||||||||||||||||| | || || || ||||| |||| || | | || |
Sbjct 1 ATGGAAGAGAAGAAGACAGAATC-TGCGACTAAAAACGTTAAAAAGGTTAA-CTTGTTAG 58
Query 208 ACCACCACTCGATCAAGCACATCCTTGACGAATCCGTCTCCGATATCGTTACGAGCCGTG 267
||||| || | ||||| ||| ||||||| ||||||||||||||||||||||||||| | |
Sbjct 59 ACCACAACGCTATCAAACACCTCCTTGATGAATCCGTCTCCGATATCGTTACGAGCAGAG 118
Query 268 GCTATAAGGAGGATGTGAGATTGAGCAACCTCAAACTGATTTTGGGAACGATTATCATCG 327
| || ||||||||||||||||| |||||| ||||| | | || ||| ||||||| || |
Sbjct 119 GGTACAAGGAGGATGTGAGATTAAGCAACGTCAAATTTCTGTTAGGAGCGATTATAATTG 178
Query 328 TTGTTGCTCTTGTTGCTCAATTCTACAACAAGAAATTCCCTGAGAACAGGGATTT-TTTG 386
| || ||||||||||||||||||||||| |||||| | | ||||||| ||||
Sbjct 179 TGGTGGCTCTTGTTGCTCAATTCTACAATAAGAAA-----T--G---TGGGATTTGTTTG 228
Query 387 A-T-TGGA-TGCATCGCATTGTATGTAGTGTTGAATGCGGTGTTGCAGCTGATTCTGTAC 443
| | | || | | | ||| |||||| ||||||| |||||| ||||||||||||||| |
Sbjct 229 ATTCTTGACT-C-TGGCA-AGTATGTGGTGTTGACTGCGGTAATGCAGCTGATTCTGTTC 285
Query 444 ACTAAGGAGAAGAATGCGATTTTGTTCACCTATCCTCCTGAGGGATCATTCACCAGCACT 503
| |||||||||||| || || ||||||||||||||| ||||||||||||||||||||||
Sbjct 286 ATTAAGGAGAAGAACGCCATCTTGTTCACCTATCCTTTTGAGGGATCATTCACCAGCACT 345
Query 504 GGTTTGGTGGTATCTTCAAAGTTGCCCAGATTCTCTGATCAGTACACTCTCACCATCGAC 563
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 346 GGTTTGGTGGTATCTTCCAAGTTACCTAGATTCTCTGATCAGTACACTCTCACCATCGAC 405
Query 564 AGTGCTGATCCAAAATCAATCTCAGCTGGGAAGTCAGTTCAGCTCACCAAAAGTGTCACC 623
||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 406 AGTGCTGATCCGAAATCAATCTCAGCTGGGAAGTCAGTTCAGTTCACCAAGAGTGTCACT 465
Query 624 CAATGGTTCACGAAAGATGGAGTTCTTGTTGAGGGTTTATTCTGGAAAGACGTAGAAGCA 683
|||||| |||| |||||||||||||||||||| ||||| ||||||||||| || || ||
Sbjct 466 CAATGGCTCACAAAAGATGGAGTTCTTGTTGAAGGTTTGTTCTGGAAAGATGTTGATGCC 525
Query 684 CTAATCAAG-A--ACTATGCAGAAGAAGAACCAAAGAAGAAGAAATGAT 729
||||||||| | || | | || ||||||||||||||||||||||||||
Sbjct 526 CTAATCAAGGAGTACAACGAAGCAGAAGAACCAAAGAAGAAGAAATGAT 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34120010715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5