BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G39990.1
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497488 jgi|Araly1|497488|fgenesh2_kg.624__1__AT2G39990.1 1735 0.0
Ahg483038 jgi|Araly1|483038|fgenesh2_kg.4__2098__AT2G39990.1 1700 0.0
> Ahg497488 jgi|Araly1|497488|fgenesh2_kg.624__1__AT2G39990.1
Length=1187
Score = 1735 bits (939), Expect = 0.0
Identities = 1110/1192 (93%), Gaps = 13/1192 (1%)
Strand=Plus/Plus
Query 10 TCCTCTGACGCTCACATCGGAAACCCTAAATCTCCACTCTCTCGCGCCTTTTACCCCTTC 69
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TCCTCTAACGCTAACATCGGAAACCCTAAATCTCCACTCTCTCGCGCCTTTTACCCGTTC 60
Query 70 TCAGAATCTTAACCATGGCGGCGACGAGCGAGCACACCATCTTGCAATTTGTGTCTCCGT 129
||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||||||
Sbjct 61 TCAGAATCTTAACCATGGCGGCGGCGAGCGAGCACACCGTCTTGCAATTCGTGGCTCCGT 120
Query 130 CATCAACGGCGTCCGCTACAACCTCTGTACTCACGGCGAGGATCCACCCTCTCGTTATCT 189
||||||||||| | || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CATCAACGGCGACGGCAACAACCTCTGTACTCACGGCGAGAATCCACCCTCTCGTTATCT 180
Query 190 TTAACGTCTGTGATTGCTTCGTGAGACGTCCTGACTCAGCTGAACGAGTCATCGGAACTC 249
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAACGTATGTGATTGCTTCGTGAGACGTCCTGACTCAGCTGAACGAGTCATCGGAACTC 240
Query 250 TCCTCGGATCTATCTTACCTGACGGAACCGTCGATATCCGCAATTCATACGCCGTCCCTC 309
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCTCGGATCTATCTTACCTGATGGAACCGTCGATATCCGCAATTCATACGCCGTCCCTC 300
Query 310 ACAATGAATCATCCGATCAGGTTGCTGTGGATATTGATTACCACCACAATATGTTAGCTT 369
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACAATGAATTTTCTGATCAGGTTGCTGTGGATATTGATTACCACCACAATATGTTAGCTT 360
Query 370 CACACCTTAAGGTGAATTCAAAGGAAACTATTGTCGGCTGGTATTCAACTGGTGCTGGGG 429
|||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 CACATCTTAAGGTGAATCCCAAGGAAATTATTGTCGGCTGGTATTCAACTGGTGCTGGGG 420
Query 430 TTAATGGCGGTAGTTCGCTGATTCATGATTTCTATGCTAGAGAAGT-ACCCAACCCAATT 488
|||||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||||
Sbjct 421 TTAATGGCGGTAGTGCGCTGATTCATGAGTTCTATGCTAGAGAAGTTACC-AACCCAATT 479
Query 489 CACCTAACTGTGGATACTGGGTTTACTAATGGTGAGGGTACTATCAAAGCTTTTGTCTCT 548
|||||||||||||| ||||| ||||| |||||||||||||| || |||||||||||||||
Sbjct 480 CACCTAACTGTGGACACTGGCTTTACAAATGGTGAGGGTACCATAAAAGCTTTTGTCTCT 539
Query 549 TCAAACCTCTCACTCGGTGATCGACAACTCGTTGCACATTTTCAAGAGATTCCTGTTGAT 608
|||||||| ||||| |||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 540 TCAAACCTTTCACTTGGTGATCGACAACTTGCTGCACAATTTCAAGAGATTCCTGTTGAT 599
Query 609 CTCCGCATGGTTGATGCTGAGAGAGTCGGATTCGATGTACTTAAGGCAACATCTGTTGAC 668
||||| ||||||||||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct 600 CTCCGTATGGTTGATGCTGAGAGAGTCGGATTCAATGTCCTCAAGGCAACATCTGTTGAC 659
Query 669 AAACTCCCAAATGACTTGGAAGGAATGGAGTTAACAATGGAGAGGCTGTTAACTCTAATC 728
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct 660 AAACTCCCAAATGACTTGGAAGGAATGGAGCTAACAATGGAGAGACTGTTAACTTTAATT 719
Query 729 AACGATGTCTACAAATATGTTGACAGTGTCGTGGGAGGTCAAATAGCTCCAGACAACAAC 788
|||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||
Sbjct 720 AACGATGTCTACAAATATGTTGACAGCGTCGTGGAAGGTCAAACAGCTCCAGACAACAAC 779
Query 789 ATTGGACGATTCATTGCAGATGCAGTAGCCTCCCTTCCCAAGTTACCTCCACAAGTCTTC 848
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 780 ATTGGACGATTCATTGCAGATGCAGTAGCCTCCCTTCCCAAATTACCTCCTCAAGTCTTC 839
Query 849 GATAACCTCGTGAATGATAGTCTCCAGGACCAATTGCTTCTGTTGTACCTATCAAGCATA 908
||| |||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 840 GATGACCTTGTGAACGATAGCCTCCAGGACCAATTGCTTCTGTTGTACCTTTCAAGCATA 899
Query 909 ACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTATAATAA 968
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 900 ACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTCTAATAA 959
Query 969 GCTTGGAAACACAAGGTTTTGCTAAAAATGGGGAATGCTGCTTTTTTGGTTTCGAATTTT 1028
|||| ||||||||||| ||||||||||||| |||||||||||||||||||||| | ||||
Sbjct 960 GCTTTGAAACACAAGGCTTTGCTAAAAATGTGGAATGCTGCTTTTTTGGTTTC-AGTTTT 1018
Query 1029 -CTTTTAACAAGTTT-ATGTAAGAATCAGCTTCTTGTTGTAGTGTTCCTAAATTGCAAGT 1086
|| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 1019 TCTGTTAACAAGTTTTATGTAAGAATCAGCCTCTTGATGTAGTGTTCCTAAATTGCAA-T 1077
Query 1087 TTA-AGAA-AGACAAAATG-CTCTGTTTCGTGAATTAAGGTCTTTAAAAGGGAT-TTTT- 1141
||| | || |||||||| | ||| ||||||||| |||||||||||||| | | | ||||
Sbjct 1078 TTATA-AAGAGACAAAA-GACTCAGTTTCGTGAGTTAAGGTCTTTAAATGAGTTCTTTTT 1135
Query 1142 AGTTGGTGTGCCTAATTTTAAACAATATACATATAAATGAGCTTTGTTCttt 1193
||||||| | |||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1136 AGTTGGTAAGTCTAATTTTAAACAAGATACATAAAAATGAGCTTTGTTCTTT 1187
> Ahg483038 jgi|Araly1|483038|fgenesh2_kg.4__2098__AT2G39990.1
Length=1182
Score = 1700 bits (920), Expect = 0.0
Identities = 1106/1194 (93%), Gaps = 20/1194 (2%)
Strand=Plus/Plus
Query 10 TCCTCTGACGCTCACATCGGAAACCCTAAATCTCCACTCTCTCGCGCCTTTTACCCCTTC 69
|||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||
Sbjct 1 TCCTCTAACGCTCACATCGGAAACCCTAAATCTCCA--CTCT-----CTTTTACCCGTTC 53
Query 70 TCAGAATCTTAACCATGGCGGCGACGAGCGAGCACACCATCTTGCAATTTGTGTCTCCGT 129
||||||||||||||||||||||| |||||||||||||| |||||||||| ||| |||| |
Sbjct 54 TCAGAATCTTAACCATGGCGGCGGCGAGCGAGCACACCGTCTTGCAATTCGTGGCTCCTT 113
Query 130 CATCAACGGCGTCCGCTACAACCTCTGTACTCACGGCGAGGATCCACCCTCTCGTTATCT 189
||||||||||| | || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 114 CATCAACGGCGACGGCAACAACCTCTGTACTCACGGCGAGAATCCACCCTCTCGTTATCT 173
Query 190 TTAACGTCTGTGATTGCTTCGTGAGACGTCCTGACTCAGCTGAACGAGTCATCGGAACTC 249
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 174 TTAACGTCTGTGATTGCTTCGTGAGGCGTCCTGACTCAGCTGAACGAGTCATCGGAACTC 233
Query 250 TCCTCGGATCTATCTTACCTGACGGAACCGTCGATATCCGCAATTCATACGCCGTCCCTC 309
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 234 TCCTCGGATCTATCTTACCTGATGGAACCGTCGATATCCGCAATTCATACGCCGTCCCTC 293
Query 310 ACAATGAATCATCCGATCAGGTTGCTGTGGATATTGATTACCACCACAATATGTTAGCTT 369
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 ACAATGAATTTTCTGATCAGGTTGCTGTGGATATTGATTACCACCACAATATGTTAGCTT 353
Query 370 CACACCTTAAGGTGAATTCAAAGGAAACTATTGTCGGCTGGTATTCAACTGGTGCTGGGG 429
|||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 354 CACATCTTAAGGTGAATCCCAAGGAAATTATTGTCGGCTGGTATTCAACTGGTGCTGGGG 413
Query 430 TTAATGGCGGTAGTTCGCTGATTCATGATTTCTATGCTAGAGAAG-TACCCAACCCAATT 488
|||||||||||||| ||||||||||||| |||||||||||||||| || |||||||||||
Sbjct 414 TTAATGGCGGTAGTGCGCTGATTCATGAGTTCTATGCTAGAGAAGTTA-CCAACCCAATT 472
Query 489 CACCTAACTGTGGATACTGGGTTTACTAATGGTGAGGGTACTATCAAAGCTTTTGTCTCT 548
|||||||||||||| ||||| ||||| |||||||||||||| || |||||||||||||||
Sbjct 473 CACCTAACTGTGGACACTGGCTTTACAAATGGTGAGGGTACCATAAAAGCTTTTGTCTCT 532
Query 549 TCAAACCTCTCACTCGGTGATCGACAACTCGTTGCACATTTTCAAGAGATTCCTGTTGAT 608
|||||||| ||||| |||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 533 TCAAACCTTTCACTTGGTGATCGACAACTTGCTGCACAATTTCAAGAGATTCCTGTTGAT 592
Query 609 CTCCGCATGGTTGATGCTGAGAGAGTCGGATTCGATGTACTTAAGGCAACATCTGTTGAC 668
||||| ||||||||||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct 593 CTCCGTATGGTTGATGCTGAGAGAGTCGGATTCAATGTCCTCAAGGCAACATCTGTTGAC 652
Query 669 AAACTCCCAAATGACTTGGAAGGAATGGAGTTAACAATGGAGAGGCTGTTAACTCTAATC 728
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct 653 AAACTCCCAAATGACTTGGAAGGAATGGAGCTAACAATGGAGAGACTGTTAACTTTAATT 712
Query 729 AACGATGTCTACAAATATGTTGACAGTGTCGTGGGAGGTCAAATAGCTCCAGACAACAAC 788
|||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||
Sbjct 713 AACGATGTCTACAAATATGTTGACAGCGTCGTGGAAGGTCAAACAGCTCCAGACAACAAC 772
Query 789 ATTGGACGATTCATTGCAGATGCAGTAGCCTCCCTTCCCAAGTTACCTCCACAAGTCTTC 848
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 773 ATTGGACGATTCATTGCAGATGCAGTAGCCTCCCTTCCCAAATTACCTCCTCAAGTCTTC 832
Query 849 GATAACCTCGTGAATGATAGTCTCCAGGACCAATTGCTTCTGTTGTACCTATCAAGCATA 908
||| |||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 833 GATGACCTTGTGAACGATAGCCTCCAGGACCAATTGCTTCTGTTGTACCTTTCAAGCATA 892
Query 909 ACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTATAATAA 968
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 893 ACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTCTAATAA 952
Query 969 GCTTGGAAACACAAGGTTTTGCTAAAAATGGGGAATGCTGCTTTTTTGGTTTCGAATTTT 1028
|||| ||||||||||| ||||||||||||| |||||||||||||||||||||| | ||||
Sbjct 953 GCTTTGAAACACAAGGCTTTGCTAAAAATGTGGAATGCTGCTTTTTTGGTTTC-AGTTTT 1011
Query 1029 -CTTTTAACAAGTTT-ATGTAAGAATCAGCTTCTTGTTGTAGTGTTCCTAAATTGCAAGT 1086
|| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 1012 TCTGTTAACAAGTTTTATGTAAGAATCAGCCTCTTGATGTAGTGTTCCTAAATTGCAA-T 1070
Query 1087 TTA-AGAA-AGACAAAATG-CTCTGTTTCGTGAATTAAGGTCTTTAAAAGGGAT-TTTT- 1141
||| | || |||||||| | ||| ||||||||| |||||||||||||| | | | ||||
Sbjct 1071 TTATA-AAGAGACAAAA-GACTCAGTTTCGTGAGTTAAGGTCTTTAAATGAGTTCTTTTT 1128
Query 1142 AGTTGGTGTGCCTAATTTTAAACAATATACATATAAATGAGCTTTGTTCttttt 1195
||||||| | |||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1129 AGTTGGTAAGTCTAATTTTAAACAAGATACATAAAAATGAGCTTTGTTCTTTTT 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44985042060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5