BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40100.1 Length=1122 Score E Sequences producing significant alignments: (Bits) Value Ahg483050 jgi|Araly1|483050|fgenesh2_kg.4__2110__AT2G40100.1 1548 0.0 > Ahg483050 jgi|Araly1|483050|fgenesh2_kg.4__2110__AT2G40100.1 Length=1017 Score = 1548 bits (838), Expect = 0.0 Identities = 965/1024 (94%), Gaps = 18/1024 (2%) Strand=Plus/Plus Query 1 ACTATTATTCTAAAATCC----aa--aaaaa-CTATATGTTAT-AACATTGGAATCATCA 52 |||||||||||||||||| || ||||| ||||||||||| |||||||||||||||| Sbjct 1 ACTATTATTCTAAAATCCAAAAAATCAAAAACCTATATGTTATAAACATTGGAATCATCA 60 Query 53 GTCTCTAAGCAGTATCACACCAACTCAATATGGCTACCACCACTGCAGCAGCAGCCTCAG 112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTCTCTAAGCAGTATCACACCAACTCAATATGGCTACCACCACTGCAGCAGCAGCCTCAG 120 Query 113 GTATTTTTGGGATCCGGATTCAAGATCCTAGACCTGGAACCGGTAGGGTCCAAGCCCGGT 172 |||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 121 GTATCTTTGGGATCCGGATTCAAGATCCTAGACTTGGAACCGGTAGGATCCAAGCCCGGT 180 Query 173 TCGGGTTCAGTTTCGGAAAAAAGAAACCGGCTCCACCGCCAAAGAAATCAAGGCAGGTCC 232 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 181 TCGGGTTCAGTTTCGGGAAAAAGAAACCGGCTCCACCACCAAAGAAATCAAGGCAGGTCC 240 Query 233 AAGACGATGGAGACAGACTAGTTTGGTTCCCCGGCGCAAACCCGCCGGAATGGTTGGACG 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AAGACGATGGAGACAGACTAGTTTGGTTCCCCGGCGCAAACCCGCCGGAATGGTTGGACG 300 Query 293 GATCGATGATCGGAGACCGTGGATTTGATCCGTTTGGTTTAGGTAAACCGGCTGAGTATC 352 ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 301 GATCGATGATCGGTGACCGTGGATTTGATCCGTTCGGTTTAGGTAAACCGGCGGAGTATC 360 Query 353 TTCAGTACGATTTCGATGGACTTGACCAAAACCTTGCCAAGAACGTGGCGGGTGACATCA 412 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 361 TTCAGTACGATTTCGACGGTCTTGACCAAAACCTTGCCAAGAACGTGGCGGGTGACATCA 420 Query 413 TCGGGATCATCCAAGAATCTTCGGAGATCAAACCGACGCCGTTTCAGCCGTACACTGAAG 472 |||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||| Sbjct 421 TCGGGATCATCCAAGACTCGTCTGAGATCAAACCCACGCCGTTTCAGCCGTACACTGAAG 480 Query 473 TCTTTGGGATCCAACGGTTCAGAGAATGTGAGCTGATCCATGGAAGGTGGGCCATGCTTG 532 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 481 TCTTTGGGATCCAACGGTTCAGAGAATGTGAGCTGATTCATGGAAGGTGGGCCATGCTTG 540 Query 533 GCACTCTAGGCGCCATCGCCGTAGAGGCTCTTACAGGAATTGCATGGCAAGACGCCGGAA 592 |||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||| Sbjct 541 GCACTCTAGGTGCCATCGCCGTTGAGGCTCTCACCGGAATTGCATGGCAAGACGCCGGAA 600 Query 593 AGGTGGAATTGGTGGAAGGATCATCGTATTTGGGACAACCATTGCCGTTCTCGTTGACGA 652 |||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||| Sbjct 601 AGGTGGAATTGGTGGAAGGATCGTCGTATTTGGGACAGCCATTGCCATTCTCTTTGACGA 660 Query 653 CGTTGATATGGATAGAAGTGTTAGTGGTCGGATACATTGAGTTCCAACGTAACTCTGAAC 712 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 661 CGTTGATATGGATAGAAGTGCTAGTGGTCGGATACATTGAGTTCCAACGTAACTCTGAGC 720 Query 713 TGGATCCAGAGAAACGGATTTACCCGGGTGGGTATTTTGACCCGTTGGGACTCGCGGCTG 772 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TTGATCCAGAGAAACGGATTTACCCGGGTGGGTATTTTGACCCGTTGGGACTCGCGGCTG 780 Query 773 ATCCAGAGAAGTTGGATACTTTGAAGCTGGCTGAGATAAAGCACTCTCGTCTCGCTATGG 832 |||||||||||||||| || |||||| |||| |||||||||||||||||||||||||||| Sbjct 781 ATCCAGAGAAGTTGGACACCTTGAAGTTGGCGGAGATAAAGCACTCTCGTCTCGCTATGG 840 Query 833 TCGCATTTCTCATCTTTGCTCTTCAGGCGGCCTTTACCGGCAAAGGCCCTGTCAGCTTCC 892 | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 841 TTGCATTTCTTATCTTTGCTCTTCAGGCGGCCTTTACCGGCAAAGGCCCTATCAGCTTCC 900 Query 893 TTGCCACCTTTAACAATTAGTTAATGAACCTTTCTATCTTTA-TTTTATCAAAATAAAAT 951 | |||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| Sbjct 901 TCGCCACCTTTAACAATTAGTTAATGAACCTTTCTATCTTTACTTTTTTCAAAAAAAAAA 960 Query 952 -TATAC-TTCAAAAACTGTATAATGCATGTTACGCTATACTTATAAAGAAGTCTTTTATT 1009 ||||| || ||||||| ||| |||||||||| ||| | ||||| ||||| |||||| Sbjct 961 ATATACGTT-AAAAACTCTATGATGCATGTTA---TAT-C--ATAAATAAGTCGTTTATT 1013 Query 1010 GTTT 1013 |||| Sbjct 1014 GTTT 1017 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41820839949 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5