BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40130.2
Length=3037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483058 jgi|Araly1|483058|fgenesh2_kg.4__2118__AT2G40130.2 4372 0.0
> Ahg483058 jgi|Araly1|483058|fgenesh2_kg.4__2118__AT2G40130.2
Length=2946
Score = 4372 bits (2367), Expect = 0.0
Identities = 2698/2857 (94%), Gaps = 26/2857 (1%)
Strand=Plus/Plus
Query 92 TTATATATGGTCGTCGGCGATGCCAACGGCGGTGAATGTAGCGAAACAATGCTTAACGGC 151
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 52 TTATATATGGTCGCCGGCGATGCCAACGGCCGTGAATGTAGCGAAACAATGCTTAACGGC 111
Query 152 AGAAGCATCCTACGCATTAGAAGAAGCTGTGAACGTTGCACGTCGAAGAGGACACTCACA 211
||||||| | ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 112 AGAAGCAGCTTACGCGTTAGAAGAGGCTGTGAACGTTGCACGTCGAAGAGGACACTCACA 171
Query 212 AACGACGTCGCTTCACGCTATCTCAGCTTTACTCTCTCTACCAACCTCAGTCTTACGTGA 271
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 172 AACGACGTCGCTTCACGCAATCTCAGCTTTACTCTCTCTACCAACCTCAGTTTTACGTGA 231
Query 272 CGCATGTGCTCGTGTTCGTAACTCTGCTTACTCTCCTCGTCTTCAATTCAAAGCTTTAGA 331
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 232 CGCATGTGCTCGTGTTCGTAACTCTGCTTACTCTCCTCGTCTTCAGTTCAAAGCTTTAGA 291
Query 332 TCTTTGCTTAAGCGTTTCTTTAGACCGGATCCAGTCGGGTCATCAACTTGGATCTGATGA 391
|||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 292 TCTTTGCTTAAGTGTTTCTTTAGACCGGATCCAATCGGGTCAACAACTTGGATCCGATGA 351
Query 392 TTCACCACCTGTTTCTAACTCTCTAATGGCTGCAATTAAACGATCTCAAGCGCATCAACG 451
||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 352 TTCACCACCTGTTTCAAACTCTCTTATGGCTGCAATCAAACGATCTCAAGCTCATCAACG 411
Query 452 TCGTTTACCTGAGAACTTCAGGATCTATCAAGAAATGTCACAGAGTCAGAA-TCAGAACT 510
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 412 TCGTTTACCTGAGAACTTCAGGATCTATCAAGAAATGTCACAGAGTCAGAACTC-GAATT 470
Query 511 CACTTTCTTGTGTGAAAGTGGAGCTTCGTCAGTTGATTCTTTCGATCTTGGATGATCCGG 570
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CACTTTCTTGTGTTAAAGTGGAGCTTCGTCAGTTGATTCTTTCGATCTTGGATGATCCGG 530
Query 571 TTGTGAGCCGGGTTTTTGGTGAAGCGGGTTTTCGGAGCTCCGAGTTAAAGCTTTCCATTA 630
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TTGTGAGTCGGGTTTTTGGTGAAGCGGGTTTTCGGAGCTCCGAGTTAAAGCTTTCCATTA 590
Query 631 TTCGACCTGTTCCTCATCTTCTTCGTTATTCATCACAACAGCCTCTGTTTCTCTGTAACC 690
|||| ||||||||||||||||| || |||||||||||||| ||||||||||| ||||||
Sbjct 591 TTCGTCCTGTTCCTCATCTTCTCCGATATTCATCACAACAACCTCTGTTTCTTTGTAACG 650
Query 691 TAACCGGGAATCCTGAACCGAATCCGGTTCGATGGGGTTTCACCGTACCAAGCCTG-AAT 749
||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 651 TAACCGGGAATCCTGAACCGAATCCGGTTCGATGGGGTTTCACCGTACCAAACC-GAAAT 709
Query 750 TTTAACGGAGATTTGGATTACCGGAGGATTAGCGCGGTTTTCACGAAAGATAAAGGGAGG 809
||||||||||||| ||||||||||||||| ||||||||||||| || || |||||||||
Sbjct 710 TTTAACGGAGATTCGGATTACCGGAGGATAAGCGCGGTTTTCATGAGGGAAAAAGGGAGG 769
Query 810 AATCCTCTGCTTGTTGGTGTATCAGCTTACGGTGTACTAACCAGTTATTTAAATTCGCTA 869
||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||
Sbjct 770 AATCCTCTGCTTGTTGGTGTATCGGCTTACGGTGTTCTAACCGGTTATTTAAATTCGCTT 829
Query 870 GAGAAAAACCAAACCGACGGGATGATTCTCCCGACGAAGCTTCACGGTTTAACGGCGGTT 929
|||||||||| |||||||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 830 GAGAAAAACCGAACCGACGGGATGATTCTACCGACGAAGCTTCACGGTCTAACCGCGGTT 889
Query 930 AACATCGGTTCAGAAATCTCCGACCAAATCAGCGTCAAATTCGATAAAACCTACACCGAC 989
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 890 AACATCGGTTCAGAAATCTCCGATCAAATCATCGTCAAATTCGATAAAACCTACACCGAC 949
Query 990 ACTAGGTTTCATGATCTAGGGAAGCTTGCAGAGCAAGGTTCAGGACCTGGACTACTCTT- 1048
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 950 ACTAGGTTTCATGATCTAGGGAAGCTTGCGGAGCAAGGTTCAGGACCTGGACTAATCTTG 1009
Query 1049 ACACTACGGTGATCTTAGGGTTTTCACCAACGGCGAAGGAAACGTACCGGCGGCGAATTA 1108
| ||||||||||||| || |||||||| | || ||||||||||||||||||||||||||
Sbjct 1010 A-ACTACGGTGATCTGAGAGTTTTCACTGATGGGGAAGGAAACGTACCGGCGGCGAATTA 1068
Query 1109 CATCGTGAATCGGA-TTTCGGAGCTGTTGCGGCGACACGGGAGAAGAGTGTGGTTGATCG 1167
|||||| |||| || ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1069 CATCGTAAATC-GAGTTTCGGAGCTGTTACGGCGACACGGGAGAAGAGTGTGGTTGATCG 1127
Query 1168 GAGCGACGACGAGCAACGAGGTTTATGAGAAGATGATGA-GAAGGTTTCCGAATGTGGAG 1226
|||| |||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||||
Sbjct 1128 GAGCAACGACGAGCAACGACGTTTATGAGAAGATGTTGAGGAA-GTTTCCGAATGTGGAG 1186
Query 1227 AAAGATTGGGATTTGCAGTTACTCACCATCACTTCTCTTAAGCCTTGTTTGCCTCACAAC 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1187 AAAGATTGGGATTTGCAGTTACTCACCATCACTTCTCTTAAGCCTTGTTTGCCTCACCAC 1246
Query 1287 AAGTCCAGTTTGATAGGATCATTTGTTCCGTTTGGTGGATTCTTCTCAACAACTCCTTCT 1346
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1247 AAGTCCAGTTTGATAGGATCATTTGTTCCATTTGGTGGATTCTTCTCAACAACTCCTTCT 1306
Query 1347 GAACTGAAACTACCCTTCTCCGGTTTCAA-AACGGAAATCACCGGACCCGTTTCTTCAAT 1405
|| |||||||||||||||||||||||||| || ||||||||| ||||| ||||| |||||
Sbjct 1307 GACCTGAAACTACCCTTCTCCGGTTTCAACAA-GGAAATCACTGGACCGGTTTCGTCAAT 1365
Query 1406 ATCCGATCAGACACAATCTACCTTGCCACCTTGGTTACAAATGACCACAAGAACTGATTT 1465
||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1366 CTCCGATCAGACCCAATCTACCTTGCCACCTTGGTTACAGATGACCACAAGAGCTGATTT 1425
Query 1466 AAACCAAAAATCAAGTGCCAAGGTCGTGC-AGACCAAAGAAGGGTTGGAATCAGTTTGTG 1524
|||||||||||| | ||| || | ||||||||||||||||||||||||||||||
Sbjct 1426 AAACCAAAAATC---T-----GGT-GT-CAAGACCAAAGAAGGGTTGGAATCAGTTTGTG 1475
Query 1525 GAAATAAGTTCACGAGCAGTGCTTCTGCATCGACCTGTTCAGCTAAATCGGTCACCACTG 1584
|| |||||| ||||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct 1476 GAGATAAGTCCACGAGCAGTGCTTCTGCATCGACCGGTTCAGCTAAATCTGTCACTACTG 1535
Query 1585 ATCTGAATCTTAGGGTAAGTTCAGTCACCACAGGATCCGGTCTCAAGAAGCATTTGGATA 1644
|||||||||| ||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1536 ATCTGAATCTAAGGATATGTTCAGTCACTGCAGGATCCGGTCTCAAGAAGCATTTGGATA 1595
Query 1645 GCAAAGATTTTTCTCAGCCACAATCTGTGTCCTCCTATTCCTTTGATAACCCAAGGGACC 1704
||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 1596 GCAAAGATTTTTCTCAGCCACAATCTGTGTCCTCCTATTGCTTGGATAATCCAAGGGACC 1655
Query 1705 TCAACGCAGAGAGTTTCAAGATTATTTACAGAAGATTAACCGATATGGTTTCAGGACAAG 1764
||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1656 TCAGCGCAGAGAGCTTCAAGATTATTTACAGAAGATTAACCGATAGGGTTTCAGGGCAAG 1715
Query 1765 ATGAGGCTGCTAGAGTTATCAGCTGTGCACTGTCACAACCGCCTAAGAGTGTCACTCGAA 1824
||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 1716 ATGAGGCTGCTAGAGTTATCAGCTGCGCATTGTCACAACCGCCTAAGATTGTCACTCGAA 1775
Query 1825 GAGATGTTTGGCTTAATTTGGTTGGTCCTGATACTGTAGGAAAGAGAAGAATGTCGCTTG 1884
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1776 GAGATGTTTGGCTCAATTTGGTTGGGCCTGATACTGTAGGAAAGAGGAGAATGTCGCTTG 1835
Query 1885 TCCTTGCTGAGATTGTGTATCAAAGCGAACACAGATTTATGGCCGTTGATCTTGGTGCCG 1944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1836 TCCTTGCTGAGATTGTGTATCAAAGCGAACACAGATTTATGGCCGTTGATCTTGGTGCCG 1895
Query 1945 CGGAGCAGGGAATGGGCGGTTGTGATGATCCGATGAGGTTGAGAGGAAAGACGATGGTTG 2004
||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||| |
Sbjct 1896 CGGAGCATGGAATGAATGGTTGTGATGATGCGATGCGGTTGAGAGGAAAGACGATGGTGG 1955
Query 2005 ATCATATCTTTGAAGTGATGTGTAGGAATCCTTTCTGCGTGGTTTTCCTTGAGAACATTG 2064
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1956 ATCATATCTTTGAAGTGATGTGTAGGAATCCTTTCTGTGTGGTTTTCCTTGAGAACATTG 2015
Query 2065 AAAAAGCTGACGAGAAGCTGCAGATGAGCTTGTCAAAGGCAATCGAAACTGGGAAGTTTA 2124
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 2016 AAAAAGCTGACGAGAAGCTGCAGATAAGCTTGTCAAAGGCAATCGAGACCGGGAAGTTTA 2075
Query 2125 TGGATTCACACGGGAGAGAAGTTGGTATCGGAAACACTATTTTTGTTATGACGTCATCTT 2184
||||||| |||||||||||||| |||||||| |||||||| ||||||||||| |||||||
Sbjct 2076 TGGATTCTCACGGGAGAGAAGTCGGTATCGGCAACACTATGTTTGTTATGACATCATCTT 2135
Query 2185 CA-C--AAGGTTCCGCAACAACAACATCTTATTCTGAAGAGAAACTATTGAGAGTCAAAG 2241
|| | ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2136 CACCAGAAGATTCCGTAACAACAACATCTTATTCTGAAGAGAAACTATTGAGAGCCAAAG 2195
Query 2242 GAAGGCAAGTGGAGATAAGGATTGAAACTGTATCTAGTTTACCAATGGTGCGATCGGTTT 2301
||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||
Sbjct 2196 GAAGGCAAGTGGAGATATGGGTTGAAACTGTATCTAGTTTACCAATGGTGCGATCAGTTT 2255
Query 2302 ACGGCCCAACCTCGGTGAACAAGAGGAAGCTGATGGGATTAGGGAATCTTCAGGAGACAA 2361
| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 2256 ATGGCCCAACCTCGGTGAAGAAGAGGAAGCTGATGGGATTAGGGAAACTTCAGGAGACGA 2315
Query 2362 AAGATACTGTGGAGAGCGTAAAACGGTTAAACAGAACAACTAATGGAGTTCTTGATCTGA 2421
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2316 AAGATACTGTGGAGACCGTAAAACGGTTGAACAGAACAACTAATGGAGTTCTTGATCTGA 2375
Query 2422 ACCTTCCGGCTCAAGAAACCGAAATCGAGGAAAAATATCATTGTGAAGAGAACTCAAACG 2481
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 2376 ACCTTCCGGCTCAAGAAACTGAAATCGAGGAAAAAGATCATTGTGAAGAGAACTCAAACG 2435
Query 2482 TTTGGTTAATGAACTTGAAGAATCATAAACGTCTCATTGAGGTTCCTTTCAAGCCTTTTG 2541
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2436 TTTGGTTAATGAAATTGAAGAATCACGAACGTCTCATTGAGGTTCCTTTCAAGCCTTTCG 2495
Query 2542 ATTTTGAAGGACTAGCTGaaaaaatcaaaaaGAGCGTTAAAGAAAATTTCGACAAGTGCG 2601
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 2496 ATTTTGAAGGACTAGCTGAAAAAATCAAAAAGAGCGCAAAAGAAATTTTCGACAAGTGCG 2555
Query 2602 TGAGATCGGATTGCTTGCTGGAGGTTGACCCTAAGATCATAGAACGATTGCTAGCGGCTG 2661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2556 TGAGATCGGATTGCTTGCTGGAGGTTGACCCTAAGATCATAGAACGATTGCTAGCGGCTG 2615
Query 2662 TTTATTTCTCAGATAGTAGAAAAGATATCAAAGAGTTGCTGGAGAATATAATGAGTCCAG 2721
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 2616 TTTATTTCTCAGATAGTAGAAAAGATATCAAAGAGTTGATGGAGAAAATAATGAGTCGAG 2675
Query 2722 TGTTCTTGAGAATTAAAGAAAGGTATGAAATCACTACTAGTTGTGTAGTAAAATTAGTTG 2781
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2676 TGTTCTTGAAAATTAAGGAAAGGTATGAAATCACTACTAGTTGTGTAGTAAAATTAGTTG 2735
Query 2782 GTCGAGATCTTGACATTTTTCTTGAGGATCAAATGGACTTGTTCTTTGTAAAATCTCAGT 2841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2736 GTCGAGATCTTGACATTTTTCTTGAGGATCAAATGGACTTGTTCTTTGTAAAATCTCAGT 2795
Query 2842 AGGTTAAAGAGAACTTTATATGGAAAGTGTATCATATAAGGTAGAGTTAGTAATAGGTAT 2901
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2796 AGGTTAAAGAGAGCTTTATATGGAAAGTGTATCATATAAGGTAGAGTTAGTAATAGGTAT 2855
Query 2902 TATTGTTCTTTTGTGTTGCTATACTATGATAATGTGT 2938
||||||||||||||||||||||||||| |||||||||
Sbjct 2856 TATTGTTCTTTTGTGTTGCTATACTATTATAATGTGT 2892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114689727695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5