BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40180.1
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901965 jgi|Araly1|901965|Al_scaffold_0004_2615 1840 0.0
Ahg344261 jgi|Araly1|344261|fgenesh1_pg.C_scaffold_4000603 126 4e-28
> Ahg901965 jgi|Araly1|901965|Al_scaffold_0004_2615
Length=1179
Score = 1840 bits (996), Expect = 0.0
Identities = 1122/1182 (95%), Gaps = 12/1182 (1%)
Strand=Plus/Plus
Query 1 ATGCAACTCTCAAAGAATCCGATCAAACAAACGAGAAATCGAGAGAAGAATTACACCGAC 60
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGCAACTCTCCAAGAATCCGATCAAACAAACGAGAAATCGAGAGAAGAAACACACCGAC 60
Query 61 GATTTCACCATGAAGAGATCTGTAATCATGGCTCCTGAATCTCCGGtttttttCCCACCT 120
|||||| | |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 61 GATTTCGCGATGAAGAGATCTGTAATCATGGCTCCGGAATCTCCTGTTTTTTTCCCACCT 120
Query 121 CCGCTTGTTTTCTCTCCGACGTCGGTCAAAACGCCGTTGTCTTCTCCTCGTTCGTCGCCA 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 121 CCGCTTGTTTTCTCTCCGACGTCGGTAAAAACGCCGTTGTCTTCTCCTCGTTCGGCGCCA 180
Query 181 CCGAAGCTGACGATGGTTGCTTGTCCTCCAAGAAAGCCAAAGGAGACGAA-GACTACGGG 239
|||||||||||||||||||||||||||||||||||||||| |||||| || |||| |||
Sbjct 181 CCGAAGCTGACGATGGTTGCTTGTCCTCCAAGAAAGCCAAGGGAGAC-AACAACTAAGGG 239
Query 240 TTC----T--GATTCTGAAACGGTGTTGAAAAGGAAACGACCACCGATGCTTGACTTAAC 293
||| | ||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 240 TTCTGGTTCGGATTCCGAAACGGTGTTGAAAAGAAAACGACCGCCGATGCTTGACTTAAC 299
Query 294 GGCGGCTCCGACGGTTGCATCGTGGTGCAGTACGACGAGAGAGACGGCGGAGAAAGGAGC 353
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 GGCGGCTCCGATGGTTGCATCGTGGTGTAGTACGACGAGAGAGACGGCGGAGAAAGGAGC 359
Query 354 GGAAGTTGTTGAAGCAGAAGAAGATGGATACTACTCTGTTTATTGCAAGAGAGGAAGACG 413
||| |||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 GGAGGTTGTTGAAGAAGAGGAAGATGGATACTACTCTGTTTATTGTAAGAGAGGAAGACG 419
Query 414 CGGACCAATGGAAGATAGGTATTTCGCGGCCGTTGATCGTAACGACGACGGAG--GTTAC 471
||||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||
Sbjct 420 CGGACCAATGGAAGATAGGTACTTCGCGGCGGTTGATCGTAAAGACGACGGAGCTGTTA- 478
Query 472 AAAAATGCTTTCTTTGGGGTATTTGATGGTCACGGCGGATCCAAGGCGGCGGAATTCGCT 531
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AAAAA-GCTTTCTTTGGGGTATTTGATGGTCACGGCGGATCCAAGGCGGCGGAATTCGCT 537
Query 532 GCGATGAATCTAGGGAACAATATCGAGGCGGCAATGGCATCGGCGAGATCAGGAGAAGAT 591
|||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 538 GCGATGAATCTAGGAAACAATATCGAGGCGGCGATGGCATCGGCAAGATCAGGAGAAGAA 597
Query 592 GGTTGTTCGATGGAGAGTGCGATAAGAGAAGGTTATATCAAAACGGATGAGGATTTCTTG 651
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGTTGCTCGATGGAGAGAGCGATAAGAGAAGGTTATATCAAAACGGATGAGGATTTCTTG 657
Query 652 AAAGAAGGTTCGAGAGGTGGCGCGTGTTGTGTAACCGCTTTGATATCGAAAGGCGAGCTT 711
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 658 AAAGAAGGTTCGAGAGGCGGCGCGTGTTGTGTAACCGCTCTGATATCGAAAGGCGAGCTT 717
Query 712 GCGGTTTCGAATGCAGGCGACTGCCGGGCTGTTATGAGTCGTGGTGGAACCGCGGAAGCT 771
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 718 GCGGTTTCAAATGCAGGAGACTGCCGGGCTGTTATGAGTCGTGGTGGAACGGCGGAAGCT 777
Query 772 CTCACTTCCGATCATAATCCTTCTCAAGCAAATGAGCTCAAAAGGATTGAAGCATTGGGT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTCACTTCCGATCATAATCCTTCTCAAGCAAATGAGCTCAAAAGGATTGAAGCATTGGGT 837
Query 832 GGTTATGTTGACTGCTGCAACGGCGTTTGGAGAATTCAAGGGACATTAGCAGTCTCACGA 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGTTATGTTGACTGCTGCAACGGCGTTTGGAGAATTCAAGGGACATTAGCAGTCTCACGA 897
Query 892 GGAATTGGAGACCGGTACCTCAAGGAGTGGGTGATAGCTGAACCGGAAACCAGAACATTA 951
||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||
Sbjct 898 GGAATTGGAGACCGGTATCTTAAGGAGTGGGTAATAGCCGAACCGGAAACCAGAACATTA 957
Query 952 CGGATTAAACCGGAGTTCGAATTCTTGATCTTAGCATCTGATGGCCTGTGGGACAAGGTA 1011
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CGGATTAAACCCGAGTTCGAATTCTTGATCTTAGCATCTGATGGCCTGTGGGACAAGGTA 1017
Query 1012 ACGAACCAAGAGGCCGTCGATGTCGTTCGACCGTACTGCGTAGGCGTAGAGAATCCAATG 1071
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1018 ACGAACCAAGAGGCGGTCGATGTGGTTCGGCCGTACTGCGTAGGCGTAGAGAATCCAATG 1077
Query 1072 ACACTTTCTGCTTGCAAGAAACTGGCTGAGCTATCGGTTAAGAGAGGCTCTTTGGATGAT 1131
||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||
Sbjct 1078 ACACTTTCTGCTTGCAAGAAACTAGCCGAGCTATCGTTTAAGAGAGGCTCTTTGGATGAT 1137
Query 1132 ATAAGTCTAATTATAATTCAGCTACAAAACTTTCTTCCATGA 1173
||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1138 ATAAGTCTAATCATAATTCAGCTACAACACTTTCTTCCATGA 1179
> Ahg344261 jgi|Araly1|344261|fgenesh1_pg.C_scaffold_4000603
Length=1137
Score = 126 bits (68), Expect = 4e-28
Identities = 72/74 (97%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 1009 GTAACGAACCAAGAGGCCGTCGATGTCGTTCGACCGTACTGCGTAGGCGTAGAGAATCCA 1068
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1131 GTAACGAACCAAGAGGCGGTCGATGTGGTTCGACCGTACTGCGTAGGCGTAGAGAATCCA 1072
Query 1069 ATGACACTTTCTGC 1082
||||||||||||||
Sbjct 1071 ATGACACTTTCTGC 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48835456677
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5