BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40330.1 Length=1071 Score E Sequences producing significant alignments: (Bits) Value Ahg483087 jgi|Araly1|483087|fgenesh2_kg.4__2147__AT2G40330.1 1531 0.0 > Ahg483087 jgi|Araly1|483087|fgenesh2_kg.4__2147__AT2G40330.1 Length=1059 Score = 1531 bits (829), Expect = 0.0 Identities = 973/1040 (94%), Gaps = 20/1040 (2%) Strand=Plus/Plus Query 3 TACATGTAAATATCTCTCA-T--T---A-A-TACAACCTCACGAAGAAAACCATTTGTTT 54 ||||||||||||||||||| | | | | |||||||||||||||||| |||||||||| Sbjct 1 TACATGTAAATATCTCTCATTAATACAACATTACAACCTCACGAAGAAACCCATTTGTTT 60 Query 55 TCTTAGAGAGAGCCAAGAATATTAAAAGAGATATAGAGAAAAGATTTGCTTTAATAATGC 114 |||||||||||||||||||||||||| ||||||| || |||||| ||||||||| ||||| Sbjct 61 TCTTAGAGAGAGCCAAGAATATTAAAGGAGATATCGAAAAAAGACTTGCTTTAAAAATGC 120 Query 115 CAACGTCGATACAGTTTCAGAGATCCTCCACCGCCGCAGAAGCAGCCAACGCCACCGTAA 174 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 121 CATCGTCGATACAGTTTCAGAGATCCTCCACCGCCGCAGAAGCAGCCAACCCCACCGTAA 180 Query 175 GAAACTATCCCCACCACCATC-AGAAACAGGTTCAAAAAGTGAGCCTCACGCGCGGGATG 233 ||||||||| ||||||||| | | |||||||||||||||||||||||||||||||||||| Sbjct 181 GAAACTATCACCACCACCA-CAACAAACAGGTTCAAAAAGTGAGCCTCACGCGCGGGATG 239 Query 234 GCTGATGTGCCGGAGCACGTGGAGCTTTCCCACACGCACGTGGTTGGTCCTTCTCAGTGC 293 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 240 GCTGATGTACCGGAGCACGTGGAGCTTTCTCACACGCACGTGGTTGGTCCTTCTCAGTGC 299 Query 294 TTCTCCGTCGTGGTACAAGACGTGGAGGCTCCGGTTTCCACAGTCTGGTCGATCCTAAGC 353 |||||||||||||| ||||||||||||||||||| |||| | |||||||||||||||||| Sbjct 300 TTCTCCGTCGTGGTGCAAGACGTGGAGGCTCCGGCTTCCGCCGTCTGGTCGATCCTAAGC 359 Query 354 CGCTTCGAACACCCTCAAGCGTACAAACACTTCGTGAAAAGCTGCCACGTGGTTATCGGA 413 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 360 CGCTTCGAACACCCTCAAGCGTACAAACACTTCGTGAAAAGCTGCCACGTGGCTATCGGA 419 Query 414 GACGGTCGAGAGGTTGGGTCGGTGAGAGAGGTCAGAGTCGTCTCTGGTCTCCCCGCGGCG 473 |||||||||||| ||||||||||||| |||||| ||||||||||||||||||| |||||| Sbjct 420 GACGGTCGAGAGATTGGGTCGGTGAGGGAGGTCCGAGTCGTCTCTGGTCTCCCTGCGGCG 479 Query 474 TTTAGCTTAGAGCGGCTTGAGATCATGGACGATGATCGCCACGTCATCAGTTTCAGCGTC 533 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 480 TTTAGCTTAGAGCGGCTTGAGATCATGGATGATGAACGCCACGTCATCAGTTTCAGCGTC 539 Query 534 GTTGGTGGGGACCACAGACTCATGAACTACAAGTCGGTGACGACGGTGCATGAGTCGGAG 593 || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 540 GTGGGTGGGGACCACAGACTTATGAACTACAAGTCGGTAACGACGGTGCATGAGTCGGAG 599 Query 594 -GAGGACTCCGACGGCAAGAAGAGGACACGTGTCGTTGAGTCATACGTCGTTGACGTACC 652 | | |||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 600 TCA-TCCGACGACGGTAAGAAGAGGACACGTGTCGTCGAGTCATACGTCGTTGACGTACC 658 Query 653 GGCGGGTAACGATAAGGAAGAGACTTGTAGCTTTGCTGATACTATAGTACGGTGCAACTT 712 ||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||| Sbjct 659 GGCGGGTAACGATAAGGAAGAGACTTGTAGCTTCGCGGATACCATTGTACGGTGCAACTT 718 Query 713 GCAATCGCTGGCTAAACTCGCCGAGAACACTTCTAAATTCTCGTAATTACa-ttttttca 771 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 719 GCAATCGCTGGCTAAACTCGCCGAGAACACGTCTAAATTCTCGTAATTACATTTTTTTCA 778 Query 772 atctttttatttttattttattttctatatttctctctttcaaaatttatcttttatttt 831 ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 779 ATCTTTTTATTTTTATTATATTTTCTAT-TTTCTCTCTTTCAAAATTTATCTTTTATTTT 837 Query 832 tGGGATTCTCGAGGTGGTTTTGGATTTTAAGATTTAAGTATTTAACTATCG-TCG--GG- 887 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || Sbjct 838 TGGGATTCTCGAGGTGGTTTTGGATTTTAAGATTTAAGTATTTAACAATCAATCGTAGGC 897 Query 888 GATTTTTCGAAACTAAAACAAAAAACAAGAATTATATCAAACAAGATGGTTTTGGTTTTT 947 |||||| ||||||||||| |||||| || ||||| | |||||||||||||||||||||| Sbjct 898 GATTTT-CGAAACTAAAAAAAAAAAAAAAAATTAGAA-AAACAAGATGGTTTTGGTTTTT 955 Query 948 CGAAGTTAGGGTTTTTAGGGTCTGTTAAATGTATGTCTCAACGATACTTTGGTTTTACCC 1007 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 956 CGAAGTTAGGGTTTTTAGGGTCTGTTAAATGTATGTCTCAACGATACTTTGGGTTTACCC 1015 Query 1008 TTAAAACCATTTCTTCTTGT 1027 |||||||||||||||||||| Sbjct 1016 TTAAAACCATTTCTTCTTGT 1035 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39876571182 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5