BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40340.1
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934838 jgi|Araly1|934838|scaffold_402826.1 1513 0.0
> Ahg934838 jgi|Araly1|934838|scaffold_402826.1
Length=1094
Score = 1513 bits (819), Expect = 0.0
Identities = 953/1018 (94%), Gaps = 8/1018 (1%)
Strand=Plus/Plus
Query 151 CAGGAAAAGGAAGTCTCGTGGAACACGAGATGTAGCTGAGATTCTAAGGCAATGGAGAGA 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 CAGGAAAAGGAAGTCTCGTGGAACACGAGATGTAGCTGAGATTCTAAGGCAATGGAGAGA 133
Query 211 GTACAATGAGCAGATTGAGGCAGAATCTTGTATCGATGGTGGTGGTCCAAAATCAATCCG 270
||| |||||||||| |||||||| ||||| ||||||||||||| ||| ||| || ||||
Sbjct 134 GTATAATGAGCAGACCGAGGCAGATTCTTGCATCGATGGTGGTGTTCCGAAACCAGTCCG 193
Query 271 AAAGCCTCCTCCAAAAGGTTCGAGGAAGGGTTGTATGAAAGGTAAAGGTGGACCTGAAAA 330
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 194 AAAGCCTCCTCCAAAAGGTTCGAGGAAGGGTTGTATGAAAGGTAAAGGAGGACCTGAAAA 253
Query 331 CGGGATTTGTGACTATAGAGGAGTTAGACAGAGGAGATGGGGTAAATGGGTTGCTGAGAT 390
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 254 TGGGATTTGTGACTATAGAGGAGTTAGACAGAGGACATGGGGTAAATGGGTCGCTGAGAT 313
Query 391 CCGTGAGCCAGACGGAGGTGCTAGGTTGTGGCTCGGTACTTTCTCCAGTTCATATGAAGC 450
||||||||||| | ||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 314 CCGTGAGCCAGGCCGAGGTGCTAGGTTATGGCTCGGTACTTTCTCTAGTTCATATGAAGC 373
Query 451 TGCATTGGCTTATGACGAGGCGGCCAAAGCTATATATGGTCAGTCTGCCAGACTCAATCT 510
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 374 TGCATTGGCTTATGACGAGGCTGCCAAAGCTATATATGGTCAGTCTGCCAGACTCAATCT 433
Query 511 TCCCGAGATCACAAATCGCTCTTCTTCGACTGCTGCCACTGCCACTGTGTCAGGCTCGGT 570
|||||||||||| |||||||||||||||| ||| | | ||||||||||| ||||||||
Sbjct 434 TCCCGAGATCACGAATCGCTCTTCTTCGA---CTG-C-C-GCCACTGTGTCTGGCTCGGT 487
Query 571 TACTGCATTTTCTGATGAATCTGAAGTTTGTGCACGTGAGGATACAAATGCAAGTTCAGG 630
|||||||||||| |||||||||||||| |||||||||||||||||||| | ||| || ||
Sbjct 488 TACTGCATTTTCAGATGAATCTGAAGTCTGTGCACGTGAGGATACAAACGTAAGATCTGG 547
Query 631 TTTTGGTCAGGTGAAACTAGAGGATTGTAGCGATGAATATGTTCTCTTAGATAGTTCTCA 690
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 548 TTTTGGTCAGGTGAAACTAGAGGATTGTAACGATGAATATGTTCTCGTAGATAGTTCTCA 607
Query 691 GTGTATTAAAGAGGAGCTGAAAGGAAAAGAGGAAGTGAGGGAAGAACATAACTTGGCTGT 750
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 608 GTGTATTAAAGAGGAGCTGAAAGTAAAAGAGGAAGTGATGGAAGAACATAACTCGGCTGT 667
Query 751 TGGTTTTGGAATTGGACAGGACTCGAAAAGGGAGACTTTGGATGCTTGGTTGATGGGAAA 810
|||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||
Sbjct 668 TGGTTTTGGAATTGGACAGGACCCGAAAAGGGAGATTTTGGATGCTTGGTTAATGGGAAA 727
Query 811 TGGCAATGAACAAGAACCATTGGAGTTTGGTGTGGATGAAACGTTTGATATTAATGAGCT 870
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 728 TGGCAATGAACAAGAACCATTGGAGTTTGGTGTGGACGAAACGTTTGATATTAATGAGCT 787
Query 871 ATTGGGTATATTAAACGACAACAATGTGTCTGGTCAAGAGACAATGCAGTATCAAGTGGA 930
|||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 788 TTTGGGTATATTAGACGACAACAATGTGTCTGGCCAAGAGACAATGCAGAATCAAGTTGA 847
Query 931 TAGACACCCAAATTTCAGTTACCAAACGCAGTTTCCAA-ATTCTAACTTGCTCGGGAGCC 989
||||| ||||| ||||||||||||||||||||| ||| || |||||||| |||||||||
Sbjct 848 TAGACTGCCAAACTTCAGTTACCAAACGCAGTTT-CAAGATGCTAACTTGTTCGGGAGCC 906
Query 990 TCAACCCTATGGAGATTGCTCAACCAGGAGTTGATTATGGATGTCCTTATGTGCAGCCCA 1049
|| ||||||||||||||||||| || |||||||||||||||| ||||||||||||||| |
Sbjct 907 TCGACCCTATGGAGATTGCTCATCCTGGAGTTGATTATGGATATCCTTATGTGCAGCCGA 966
Query 1050 GTGATATGGAGAACTATGGTATTGATTTAGACCATCGCAGGTTCAATGATCTTGACATAC 1109
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GTGAAATGGAGAACAATGGTATTGATTTAGACCATCGCAGGTTCAATGATCTTGACATAC 1026
Query 1110 AGGACTTGGATTTTGGAGGAGACAAAGATGTTCATGGATCTACATAAGATTTCAAATT 1167
||||||||||||||||||| || |||||||||||||| |||||||||||| ||| |||
Sbjct 1027 AGGACTTGGATTTTGGAGGGGAAAAAGATGTTCATGGCTCTACATAAGATCTCAGATT 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51770921286
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5