BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40380.1
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483092 jgi|Araly1|483092|fgenesh2_kg.4__2152__AT2G40380.1 1026 0.0
> Ahg483092 jgi|Araly1|483092|fgenesh2_kg.4__2152__AT2G40380.1
Length=770
Score = 1026 bits (555), Expect = 0.0
Identities = 613/642 (95%), Gaps = 0/642 (0%)
Strand=Plus/Plus
Query 43 CACAGACTCACCGACACCACCAATAATGTCTTCTTCTCCGGCGATTCTTCCCGTCACCAA 102
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 26 CACACACTCACCGACACCACCAATAATGTCATCTTCTCCGGCGATTCTTCCCGTGACCAA 85
Query 103 CCAGCAAGCAGCCACTCAATCTCAACCTCCAATCAATTCTCACGCCTTCCGTACTTTCCT 162
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 86 CCAGCAAGCAGCTACTCAATCTCAACCTCCAATCAATTCTCACGCCTTCCGTACATTCCT 145
Query 163 CTCACGCCTCTCGTCCTCTCTCCGCGAAAGCCTCTCTCAACGCCGTCCATGGCTAGAACT 222
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 CTCACGTCTCTCATCCTCTCTCCGCGAAAGCCTCTCTCAACGCCGTCCATGGCTAGAACT 205
Query 223 CGTAGATCGGAGCTCCTTCGCTAGACCTGACTCTCTCACCGATTCCTTCTCCCGGATCCG 282
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 206 CGTAGATCGGAGCTCCTTCGCTAGACCTGACTCTCTGACCGATTCCTTCTCCCGGATCCG 265
Query 283 TAAGAATCTCGCTTACTTCAAAGTCAATTACTCCGCAATTGtctcgttagtccttgcttt 342
||||||||| ||||||||||| ||||||||||||||| | ||||| |||||||| |||||
Sbjct 266 TAAGAATCTGGCTTACTTCAAGGTCAATTACTCCGCAGTCGTCTCCTTAGTCCTCGCTTT 325
Query 343 ctccctcctctcgcatccattctcgcttctcgtcctcctctctctcttaggctcctggat 402
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 326 CTCCCTCCTCTCGCATCCATTCTCTCTTCTCGTCCTCCTCTCTCTCTTAGGCTCGTGGAT 385
Query 403 gtttctctACCTCTTCCGATCTTCAGATCAGCCTTTGGTTCTCTTTGGTCGTAGTTTCTC 462
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 386 GTTTCTCTACCTCTTCCGATCTTCAGATCAGCCTTTGGTTCTCTTTGGTCGAACATTCTC 445
Query 463 AGATCGTGAGACTTTGCTTGGTCTTGTTTTGACTACGATTGTGGTTGTGTTTATGACGAG 522
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 446 AGATCGTGAGACTTTGCTTGCTCTGGTTTTGACTACGATTGTGGTTGTGTTTATGACGAG 505
Query 523 TGTTGGATCTTTGTTAACATCGGCGTTAACGATTGGAATCGCGATTGTTTGCTTACATGG 582
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 506 TGTTGGATCTTTGTTAACATCGGCTTTGACGATTGGAATCGCGATTGTTTGCTTACACGG 565
Query 583 TGCGTTTAGGGTTCCTGATGATTTGTTCTTGGATGAACAAGAGCCTGCTAATGCTGGTTT 642
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 566 TGCGTTTAGGGTTCCTGATGATTTGTTCTTGGATGATCAAGAGCCTGCTAATGCTGGTTT 625
Query 643 ACTCTCGTTCATTGGTAATTCTGCTGCTACTTCTGCTGCTGC 684
|||||| ||||||||||||||||||||| |||||| || |||
Sbjct 626 ACTCTCTTTCATTGGTAATTCTGCTGCTGCTTCTGTTGTTGC 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35187452391
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5