BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40460.1
Length=2077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902003 jgi|Araly1|902003|Al_scaffold_0004_2653 2789 0.0
> Ahg902003 jgi|Araly1|902003|Al_scaffold_0004_2653
Length=1749
Score = 2789 bits (1510), Expect = 0.0
Identities = 1676/1756 (95%), Gaps = 11/1756 (1%)
Strand=Plus/Plus
Query 217 ATGGAGGCTGCAAAAGTTTACACACAAGATGGCACCGTCGACCTCCAAGGCCGTCCCGTC 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGCTGCAAAAGTTTACACACAAGATGGCACCGTCGACCTCCAAGGCCGTCCCGTC 60
Query 277 CTCGCCTCCAAGACCGGTCGTTGGAGAGCTTGCTCTTTCCTCCTCGGGTATGAAGCGTTT 336
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCGCCTCCAAGACAGGTCGTTGGAGAGCTTGCTCTTTCCTCCTCGGGTATGAAGCGTTT 120
Query 337 GAGAGGATGGCGTTTTATGGAATAGCGTCGAACTTAGTGAATTATTTGACTAAAAGACTT 396
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 121 GAGAGGATGGCGTTTTATGGAATAGCGTCGAACTTAGTGAATTATTTGACCACAAGACTT 180
Query 397 CACGAAGATACGATCTCTTCGGTTAGAAATGTGAATAATTGGTCCGGTGCGGTTTGGATC 456
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CACGAAGACACTATCTCTTCGGTTAGAAATGTGAATAATTGGTCCGGTGCGGTTTGGATC 240
Query 457 ACTCCCATAGCCGGAGCTTACATCGCTGACTCATACATCGGTCGCTTCTGGACTTTTACT 516
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 241 ACTCCCATCGCCGGAGCTTACATCGCCGACTCATACATCGGCCGCTTCTGGACATTTACT 300
Query 517 GCCTCCTCTCTCATCTACGTCCTGGGGATGATTCTCTTGACAATGGCGGTAACAGTAAAA 576
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GCCTCCTCTCTCATCTACGTCCTGGGGATGATTCTCTTAACAATGGCGGTAACAGTAAAA 360
Query 577 TCCCTAAGACCGACATGCGAAAACGGGGTATGCAACAAGGCCTCCTCGTTACAAGTAACA 636
|||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||
Sbjct 361 TCCCTAAGACCGACATGCGAAAACGGGGTATGCAACAAAGCCTCCTCCTTACAAATAACA 420
Query 637 TTTTTCTACATATCCCTCTATACCATAGCTATTGGAGCCGGTGGAACAAAACCTAACATT 696
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTTTCTACATATCCCTCTATACAATAGCTATTGGAGCCGGTGGAACAAAACCTAACATT 480
Query 697 TCCACATTTGGAGCGGACCAATTCGACAGTTATAGCATTGAAGaaaa-aaaGCAAAAGGT 755
||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 481 TCCACATTTGGAGCGGACCAATTCGACAGCTATAGCATTGAAGAAAAGAAA-CAAAAGGT 539
Query 756 TTCATTCTTCAATTGGTGGATGTTTAGCTCTTTCTTAGGCGCGTTGTTTGCGACATTGGG 815
||||||||||||||||||||||||||||||||| || ||||| || ||||| ||||| ||
Sbjct 540 TTCATTCTTCAATTGGTGGATGTTTAGCTCTTTTTTGGGCGCTTTATTTGCAACATTAGG 599
Query 816 GCTCGTCTACATCCAAGAGAATCTCGGATGGGGTTTAGGTTATGGCATCCCTACCGTAGG 875
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 GCTCGTCTACATCCAAGAGAATCTCGGATGGGGTTTAGGTTATGGCATTCCTACCGTAGG 659
Query 876 ACTCTTGGTTTCTCTCGTTGTGTTCTATATTGGAACACCATTTTACAGGCATAAGGTTAT 935
||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 ACTATTGGTTTCTCTCATTGTGTTCTATATCGGAACACCATTTTACAGGCATAAGGTTAT 719
Query 936 CAAAACAGACAATTTGGCGAAAGATTTGGTTCAAGTTCCTATCGCGGCATTCAAAAACCG 995
|||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 720 CAAATCAGATAATTTGGCGAAAGATTTGGTTCAAGTTCCTATCGAGGCATTCAAAAACCG 779
Query 996 AAAGCTTCAGTGTCCTGATGACCACTTGGAGCTTTATGAGCTTGACTCTCATTATTACAA 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AAAGCTTCAGTGTCCTGATGACCACTTGGAGCTTTATGAGCTTGACTCTCATTATTACAA 839
Query 1056 AAGCAATGGTAAGCATCAAGTTCATCACACGCCCGTCTTCAGGTTCTTGGATAAAGCGGC 1115
|||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 840 AAGCAATGGTAAACATCAAGTTCATCACACTCACGTCTTCAGGTTCTTGGATAAAGCGGC 899
Query 1116 CATTAAGACAAGTTCAAGAGTG---CCATGTACGGTGACAAAAGTGGAAGTGGCAAAGCG 1172
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 900 CATTAAGACAAGTTCAAGAGTGTTACCATGTACGGTAACAAAAGTGGAAGTGGCAAAGCG 959
Query 1173 TGTGCTAGGACTTATCTTTATATGGCTTGTCACTTTGATCCCAAGCACCTTGTGGGCACA 1232
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 TGTGCTAGGACTTATCTTTATATGGCTTGTCACTTTAATCCCAAGCACCTTGTGGGCACA 1019
Query 1233 AGTCAACACTCTCTTCGTCAAACAAGGGACCACGCTGGACCGAAAAATTGGATCCAACTT 1292
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1020 AGTCAACACTCTTTTCGTCAAACAAGGGACCACGCTTGACCGAAAAATCGGATCCAACTT 1079
Query 1293 CCAGATCCCCGCGGCTTCATTGGGAAGCTTTGTTACGCTCTCCATGCTTCTCTCTGTGCC 1352
||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 CCAGATCCCTGCGGCTTCACTGGGAAGCTTTGTTACGCTCTCGATGCTTCTCTCTGTGCC 1139
Query 1353 CATGTACGACCAATCCTTTGTTCCCTTCATGCGCAAGAAAACCGGAAACCCTAGAGGGAT 1412
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1140 CATGTACGACCAATACTTTGTTCCCTTCATGCGCAAGAAAACCGGAAATCCTAGAGGGAT 1199
Query 1413 TACTTTACTCCAAAGACTAGGGGTAGGGTTTGCGATACAAATTGTTGCAATCGCGATTGC 1472
||| |||||||||| |||||| ||||||||||||||||||||||||| |||||| ||||
Sbjct 1200 CACTCTACTCCAAAGGCTAGGGATAGGGTTTGCGATACAAATTGTTGCCATCGCGGTTGC 1259
Query 1473 TTCGGCTGTGGAGGTCAAGAGGATGCGCGTGATAAAGGAATTTCACATAACTAGTCCGAC 1532
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1260 TTCGGCCGTGGAGGTCAAGAGGATGCGCGTGATAAGGGAATTTCACATAACTAGTCCGAA 1319
Query 1533 ACAAGTTGTGCCTATGAGCATTTTCTGGTTGCTCCCTCAGTACTCTCTTCTAGGCATTGG 1592
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AGAAGTTGTGCCTATGAGCATTTTCTGGTTGCTCCCTCAGTACTCTCTTCTAGGCATTGG 1379
Query 1593 GGATGTGTTTAACGCAATTGGTTTGCTTGAGTTTTTCTATGATCAGTCACCTGAGGAGAT 1652
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GGATGTGTTTAACGCGATTGGTTTGCTTGAGTTTTTCTATGATCAGTCACCTGAGGAGAT 1439
Query 1653 GCAGAGCCTTGGAACAACGTTTTTCACGAGTGGAATCGGTCTTGGGAATTTCTTGAACAG 1712
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1440 GCAGAGCCTTGGAACAACGTTTTTCACGAGTGGCATCGGTCTTGGGAATTTCTTGAACAG 1499
Query 1713 CTTTTTGGTGACAATGATTGATAAGATCACGAGTAAAGGTGGAGGGAAGAGTTGGATTGG 1772
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1500 CTTCTTGGTGACAATGATTGACAAGATCACGAGTAAAGGTGGAGGCAAGAGTTGGATTGG 1559
Query 1773 GAATAATTTGAATGATTCGAGGCTTGATTACTATTATGGATTTCTAGTGGTGATTTCGAT 1832
| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1560 GGATAATTTGAATGATTCGAGGCTTGATTACTATTATGGGTTTCTAATGGTGATTTCGAT 1619
Query 1833 AGTGAACATGGGACTTTTCGTGTGGGCAGCGAGTAAGTATGTTTACAAGAGTGATGATGA 1892
||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||
Sbjct 1620 AGTGAACATGGGATTTTTCTTGTGGGCAGCGACCAAGTATGTTTACAAGAGTGATGA-GA 1678
Query 1893 CACCAAGGAGTTTAGTGGAGGAGGATGTGTTCAAATGGAGGCCAAAGCCTTAGACACATC 1952
| | ||| |||| ||||||||| ||||||||||||||||| |||||||| || |||||
Sbjct 1679 C-CAAAG-AGTTGAGTGGAGGA---TGTGTTCAAATGGAGGCAAAAGCCTTCGAGACATC 1733
Query 1953 TCCTCTTAGTATCTAA 1968
|||||||||||||||
Sbjct 1734 GCCTCTTAGTATCTAA 1749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78123092495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5