BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40600.1 Length=940 Score E Sequences producing significant alignments: (Bits) Value Ahg483117 jgi|Araly1|483117|fgenesh2_kg.4__2177__AT2G40600.1 1033 0.0 Ahg934868 jgi|Araly1|934868|scaffold_402856.1 372 3e-102 > Ahg483117 jgi|Araly1|483117|fgenesh2_kg.4__2177__AT2G40600.1 Length=827 Score = 1033 bits (559), Expect = 0.0 Identities = 718/792 (91%), Gaps = 21/792 (3%) Strand=Plus/Plus Query 16 ACGACTCAAATGAGACGACAATGGTTGACCTCTGGACTCTCGAG--T-CTCCCTGGATTA 72 ||||||||||||||||||| ||||||||||| |||| ||| ||| | |||||| ||||| Sbjct 1 ACGACTCAAATGAGACGACTATGGTTGACCTGTGGAGTCTTGAGTCTCCTCCCTAGATTA 60 Query 73 CTACACTCGAGCTCGACGATCCTTAGACCAACTTCGTCTTCTTCCTCGAGAGCTTCTCTG 132 || |||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 CTTCACTCGAGCT---CGATCCTTAGACCAACTTCG---TCTTCCTCGAGAGCTTCTCTG 114 Query 133 ATCTCCTTC-GC-CGTTAATAATTTCCAC-ACGATC-GCTTCT-TCTTCGT-CTACTCTC 186 | |||| | | | || | ||| | || || | ||| ||||| | |||| Sbjct 115 AGCTCCGCCACCTCCTTCGTCGCTTCTTCTTCG-TCTAC-TCTCTCTTC-TCCTACGAGG 171 Query 187 TCTTCTCGCTTGACAACTGTATCATCGTCCATGGCTTCTGGTGACGAAGGAGCTGTTTTC 246 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 172 ACTTCTCGCTTGACAACTGTATCA---TCCATGGCTTCTAAAGACGAAGGAGCTGTTTTT 228 Query 247 AATTTGTCTGATTCTAGCCTTCTTAAGATCCTTAAAGGAGACATCACCAAGTGGTCTGTT 306 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 229 AATTTGTCAGATTCTAGCCTTCTTAAGATTCTTAAAGGAGACATCACCAAGTGGTCCGTT 288 Query 307 GATTCTTCCTCCGATGCTATTGTCAATCCAGCAAATGAGCGTATGTTAGGTGGTGGTGGT 366 ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 289 GATTCCTCCTCCGATGCTGTTGTCACTCCAGCAAATGAGCGTATGTTAGGTGGTGGTGGT 348 Query 367 GCTGATGGAGCAATACATAGAGCTGCTGGGCCACAACTCAGAGCTGCATGCTATGAGGTT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 349 GCTGATGGAGCAATACATAGAGCTGCTGGGCCACAACTCAGAGCTGCATGCTATGAGGTT 408 Query 427 CCTGAAGTTCGTCCTGGAGTCCGTTGTCCAACTGGAGAAGCAAGAATTACTCCGGGTTTT 486 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 409 CCTGAAGTTCGTCCTGGAGTCCGTTGTCCAACCGGAGAAGCAAGAGTTACTCCGGGTTTT 468 Query 487 AACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTATGACTCAGATGTCAAC 546 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 469 AACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCGATCTATGACTCTGATGTCAAC 528 Query 547 CCTCAAGAATCTCTCACCAATTCGTACAAAAATAGTCTGAGAGTTGCAAAGGAAAACAAT 606 ||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||| Sbjct 529 CCTCAAGAATCCCTCACAAATGCTTACAAAAATAGTCTGAGAGTTGCAAAGGAAAACAAC 588 Query 607 ATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGGATATCCTTTTGATGAA 666 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 589 ATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGGATATCCTTTTGATGAA 648 Query 667 GCTGCTGCGATAGGTATTTCAACCATCAAACAATTCTCTACTGACTTTAAAGAGGTGCAT 726 ||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||| ||| Sbjct 649 GCTGCTGCGATCGGTATATCAACCATCAAACAGTTCTCTAATGACTTTAAAGAGGTACAT 708 Query 727 TTTGTTTTGTTCGCGGACGACATATTCAGCGTATGGGTAAACAAAGCAAAGGAGGTGCTA 786 |||||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||| Sbjct 709 TTTGTTTTGTTCGCTGACGATATATTCAGTGTGTGGGTAAACAAAGCAAAGGAGGTGCTA 768 Query 787 CAAAAAGCCTAA 798 |||||||||||| Sbjct 769 CAAAAAGCCTAA 780 > Ahg934868 jgi|Araly1|934868|scaffold_402856.1 Length=703 Score = 372 bits (201), Expect = 3e-102 Identities = 408/506 (81%), Gaps = 22/506 (4%) Strand=Plus/Plus Query 243 TTTCAATTTGTCTGATTCTAGCCTTCTTAAGATCCTTAAAGGAGACATCACCAAGTGGTC 302 |||||| |||||||||| | || | ||||||||| || |||| |||||||| || ||||| Sbjct 47 TTTCAAGTTGTCTGATTATTGCGTGCTTAAGATCGTTCAAGGCGACATCACAAATTGGTC 106 Query 303 TGTTGAT-TCTTCCTCCGATGCTATTGTCAATCCAGCAAATGAGCGTATGTTAGGTGGTG 361 || ||| | ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 107 CGTCGATGGC-TCCTCCGATGCTATTGTTAATCCAGCAAATGAGCGTATGTTAGGTGGTA 165 Query 362 GTGGTGCTGATGGAGCAATACATAGA-GCTGCTGGGCCACAACTCAGAGCTGCATGCTAT 420 |||||| |||||||| || ||| || || ||||||||||| | ||||| ||||| || Sbjct 166 ATGGTGCAGATGGAGCCATTCAT-GACGCCGCTGGGCCACAGTTGAGAGCAGCATGTTAC 224 Query 421 GAGGTTCCTGAAGTTCGTCCTGGAGTCCGTTGTCCAACTGGAGAAGCAAGAATTACTCCG 480 || || ||||||||| |||| |||||||||||||| || |||||| |||||||||| ||| Sbjct 225 GAAGTCCCTGAAGTTAGTCCCGGAGTCCGTTGTCCCACCGGAGAATCAAGAATTACGCCG 284 Query 481 GGTTTTAACTTGCCTGCATCGCGTGTGATTCACACTGTTGGACCTATCTATGACT-C--A 537 |||||||||||||||||||| | |||||||||||| |||||||| || ||| | | | | Sbjct 285 GGTTTTAACTTGCCTGCATCTCATGTGATTCACACGGTTGGACCCATTTATAA-TGCCGA 343 Query 538 GATGTCAACCCTCAAGAATCTC-TCACCAATT-CGTACAAAAATAGTCTGAGAGTTGCAA 595 || | || ||| ||||| ||| | | || | | ||||| || ||||||||||| || | Sbjct 344 GAAG--AATCCT-AAGAAACTCCT-AGAAAGTGCTTACAAGAACAGTCTGAGAGTGGCTA 399 Query 596 AGGAAAACAATAT-CAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTAC-GGATA 653 |||| || || || | ||||| |||||| |||| ||||||||||| |||| | || || Sbjct 400 AGGAGAATAACATTCGG-TACATAGCATTTACTGCGATATCTTGTGGTATTTTCAGG-TA 457 Query 654 TCCTTTTGATGAAGCTGCTGCGATAGGTATTTCAACCATCAAACAATTCTC-TACTGACT 712 |||||| || ||||||||| | |||| ||| || || | || ||||| | || || | Sbjct 458 TCCTTTGGAGGAAGCTGCTTCTATAGCTATCTCCACTGTTAAGCAATT-TGGTAAAGA-T 515 Query 713 TT-AAAGAGGTGCATTTTGTTTTGTT 737 || |||||||||||||||||| |||| Sbjct 516 TTGAAAGAGGTGCATTTTGTTATGTT 541 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34882469055 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5