BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40610.1 Length=1105 Score E Sequences producing significant alignments: (Bits) Value Ahg934869 jgi|Araly1|934869|scaffold_402857.1 1160 0.0 > Ahg934869 jgi|Araly1|934869|scaffold_402857.1 Length=821 Score = 1160 bits (628), Expect = 0.0 Identities = 702/738 (95%), Gaps = 4/738 (1%) Strand=Plus/Plus Query 136 ATTATTCCTCCAAGGAACTCATGGAGACGACGGAGGTTGGCAAGGTGGTCACGCCACGTT 195 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 85 ATTCTTCCTCCAAGGAACTCATGGAGACGACGGAGGTTGGCAAGGTGGTCACGCTACGTT 144 Query 196 TTACGGCGGCGAAGATGCTTCCGGCACCATGGGCGGAGCTTGTGGCTATGGAAATTTGTA 255 |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 145 CTACGGCGGTGAAGATGCTTCTGGCACCATGGGCGGAGCTTGTGGCTATGGAAATTTGTA 204 Query 256 TGGCCAAGGTTACGGGACGAACACGGCGGCTTTAAGTACGGCTCTATTCAACAACGGACT 315 |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 205 TGGCCAAGGTTACGGGACGAGCACGGCGGCTTTAAGTACGGCTTTATTCAACAACGGACT 264 Query 316 CACGTGTGGCGCGTGCTATGAGATGAAGTGTAACGATGACCCGAGGTGGTGTCTCGGGTC 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 CACGTGTGGCGCGTGCTATGAGATGAAGTGTAACGATGACCCGAGGTGGTGTCTCGGGTC 324 Query 376 AACCATCACCGTCACAGCTACAAACTTTTGCCCACCTAACCCTGGCCTCTCCAACGATAA 435 ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| Sbjct 325 TACCATCACCGTCACAGCCACTAACTTTTGCCCACCAAACCCTGGCCTCTCCAACGATAA 384 Query 436 TGGAGGTTGGTGCAATCCTCCTCTTCAGCATTTCGACCTCGCCGAGCCAGCTTTTCTTCA 495 ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || Sbjct 385 TGGAGGTTGGTGCAATCCTCCTCTTCAACATTTCGACCTAGCCGAGCCAGCTTTTCTCCA 444 Query 496 GATCGCTCAGTATCGTGCCGGCATTGTTCCTGTCTCTTTCCGAAGAGTACCATGTATGAA 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 GATCGCTCAGTATCGTGCCGGCATTGTTCCTGTCTCTTTCCGAAGAGTACCATGTATGAA 504 Query 556 GAAAGGAGGAATAAGGTTTACGATCAACGGACACTCATACTTCAACCTCGTTCTGATCTC 615 |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| Sbjct 505 GAAAGGAGGAATAAGGTTCACGATCAACGGACATTCATACTTCAACCTCGTCCTGATCTC 564 Query 616 CAACGTAGGAGGAGCAGGAGACGTACACGCCGTCTCAATCAAAGGCTCAAAAACACAGTC 675 |||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| Sbjct 565 GAACGTAGGAGGAGCAGGAGATGTCCACGCTGTCTCGATCAAAGGCTCAAAAACACAGTC 624 Query 676 GTGGCAAGCGATGTCTAGAAACTGGGGACAAAACTGGCAGAGCAATTCATACATGAACGA 735 ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 625 GTGGCAAGCAATGTCTAGAAATTGGGGACAAAACTGGCAGAGCAATTCTTACATGAACGA 684 Query 736 CCAAAGCCTTTCCTTCCAGGTAACGACCAGCGATGGTCGCACACTCGTTAGCAACGACGT 795 ||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct 685 CCAAAGCCTTTCCTTCCAGGTCACCACCAGCGATGGTCGCACACTCGTTAGCAATGACGT 744 Query 796 GGCTCCTTCTAATTGGCAGTTCGGACAAACCTACCAAGGTGGTCAGTTCTGATCCAAACC 855 |||||||||||||||||| |||||||||||||||||||| ||||| |||||||| | ||| Sbjct 745 GGCTCCTTCTAATTGGCAATTCGGACAAACCTACCAAGGCGGTCAATTCTGATC-AGACC 803 Query 856 ATCATC--C-ACATCTCT 870 |||||| | |||||||| Sbjct 804 ATCATCATCCACATCTCT 821 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41172750360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5