BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40810.1
Length=1576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321769 jgi|Araly1|321769|fgenesh1_pm.C_scaffold_4001826 1807 0.0
Ahg901662 jgi|Araly1|901662|Al_scaffold_0004_2312 1219 0.0
Ahg486086 jgi|Araly1|486086|fgenesh2_kg.5__2078__AT3G56440.1 1014 0.0
> Ahg321769 jgi|Araly1|321769|fgenesh1_pm.C_scaffold_4001826
Length=1215
Score = 1807 bits (978), Expect = 0.0
Identities = 1084/1136 (95%), Gaps = 3/1136 (0%)
Strand=Plus/Plus
Query 183 TCTGCTTCCAGAATCAGAATCTATGAAAAAAGAGGAAGCAGAGTTAGTTTCTGTGTGTTG 242
|||| || |||||||||||||||| || || |||||||||||||| ||||||||||||||
Sbjct 82 TCTGGTT-CAGAATCAGAATCTATTAACAACGAGGAAGCAGAGTTGGTTTCTGTGTGTTG 140
Query 243 GAATCAGGATTCAAGTTGTTTTGCAGCTGGAACGAGTCATGGTTTTCGTATATATAACTG 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 GAATCAGGATTCAAGTTGTTTTGCAGCTGGAACGAGTCATGGTTTTCGTATATATAACTG 200
Query 303 TGAACCTTTCAAAGAAACTTTCAGGCGTGAGCTAAAGGACGGTGGTTTTAAAATCGTAGA 362
| |||||||||| |||||||||||||||||||||||| |||| ||||||||||| |||||
Sbjct 201 TCAACCTTTCAAGGAAACTTTCAGGCGTGAGCTAAAGAACGGCGGTTTTAAAATTGTAGA 260
Query 363 GATGCTTTTCCGTAGCAATATACTGGCACTTGTTGGTGGTGGACCTAACTCTCAGTATCC 422
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 261 GATGCTTTTCCGAAGCAATATATTGGCACTTGTTGGTGGTGGACCTAACTCTCAGTACCC 320
Query 423 TTCAAGCAAAGTACTAATTTGGGATGATCATCAGAGCCGTTGCATTAGTGAATTTGCATT 482
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 321 TTCAAACAAAGTACTAATTTGGGATGATCATCAGAGCCGTTGCATCAGTGAATTTGCATT 380
Query 483 TAGGTCTGAGATTCGTGCAGTGAAATTAAGAAGGGATCGGATTGTTGTTGTTCTTGAACA 542
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TAGGTCTGAGATTCGTGCTGTGAAATTAAGAAGGGATCGGATTGTTGTTGTTCTTGAACA 440
Query 543 TAAGATTTATGTTTATAACTTTATGGATCTTAGACTTCTTCATCAGATTGAAACTCAAGC 602
||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||||
Sbjct 441 TAAGATTTATGTTTACAATTTTATGGACCTTAGACTTCTTCATCAGATTGAAACCCAAGC 500
Query 603 TAATCCTAGAGGATTGTGTTGCCTTTCTCATCATTCTAATACGTCTGTGTTGGCTTGCCC 662
||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 501 TAATCCTAGAGGATTATGTTGCCTTTCTCATCATTCTAATACGTCTGTGCTCGCTTGCCC 560
Query 663 TGGTC-TCAATCGAGGAGAGATTCGTGTTGAACATTTCGGGCTTAACATGGTACAAATCA 721
|||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 561 CGGTCTTC-ATCGAGGAGAGATTCGAGTTGAACATTTCGGGCTTAACATGGTACAAATCA 619
Query 722 TAAATGCTCATGATTCAAGTATTGCGTGTATGACCTTGACATTGGATGGTTTGTTGCTTG 781
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 620 TAAATGCTCATGATTCTAGTATTGCGTGTATGACTTTGACATTGGATGGTTTGTTGCTCG 679
Query 782 CAACTGCTAGTACAAAGGGAACTCTGATTAGAATCTTCAACACAATGGATGGAACTCGTT 841
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 680 CAACTGCTAGTACAAAGGGAACTCTGATTAGAATCTTCAACACTATGGACGGAACTCGTT 739
Query 842 TGCAAGAGGTACGAAGAGGAGTCGACAGAGCAGATATATATAGCATTGCACTTTCACCAA 901
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 740 TGCAAGAGGTACGAAGAGGAGTGGACAGAGCAGATATTTATAGCATTGCACTTTCACCAA 799
Query 902 ATGTGCAGTGGCTGGCGGTATCAAGTGACAAGGGGACTGTTCACATTTTCTCTCTTAGAG 961
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 800 ACGTGCAGTGGCTGGCTGTATCAAGCGACAAGGGGACTGTTCACATTTTCTCTCTTAGAG 859
Query 962 TTAGGGTTGTTGGGGAGGATTCTTATTCCACTGAAAATGGAGCTCTGTTGACACAACAAA 1021
||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 860 TTAGGGTAGTTGGGGAGGATTCTTATTCCACTGAAAATGCAGCTCTCCTGACACAACAAA 919
Query 1022 ATTATTCTAATTCTCTGCAAGGCCTTGTTTCTCCAACCATTGGTACCAATCCCGGTTCGT 1081
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 920 CTTATTCTACTTCTCTGCAAGGCCTTGTTTCTCCAACCACTGGTACCAATCCCGGTTCGT 979
Query 1082 CATTGTCGTTTATGAGAGGTGTTCTACCAAAGTATTTCAGCTCGGAATGGTCATATGCAC 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 CATTGTCGTTTATGAGAGGTGTTCTACCAAAGTATTTCAGCTCGGAATGGTCATATGCAC 1039
Query 1142 AGTTTCATGTATCAGAAGTCACACAATTCTTCGCAGCATTTGGCAGTAACAACACGGTTG 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 AGTTTCATGTATCAGAAGTCACACAATTCTTCGCAGCATTTGGCAGTAACAACACGGTTG 1099
Query 1202 CTATTATCGGCATGGATGGAAGTTTCTACCGATGCAGCTTTGATCCCGTGAACGGAGGAG 1261
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1100 CTATTATCGGCATGGATGGAAGTTTTTACAGATGCAGCTTTGATCCCGTGAACGGAGGAG 1159
Query 1262 AGATGGGGCAACTGGAATATATCCACTTTATGAAGATGGACAACCGCCCGTGATAA 1317
|||||||||||||||||||| |||||||| |||||| ||||||||||| | |||||
Sbjct 1160 AGATGGGGCAACTGGAATATTTCCACTTTCTGAAGACGGACAACCGCCGGAGATAA 1215
Score = 71.3 bits (38), Expect = 2e-11
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 133 ATGAGTTCAACTGTTTCAAATCCCCAAGGAATCCTGCAACCAGG 176
||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGAGCTCAACTGTTTCAAATCCCCAAGGAATCCTGCAACAAGG 44
> Ahg901662 jgi|Araly1|901662|Al_scaffold_0004_2312
Length=1170
Score = 1219 bits (660), Expect = 0.0
Identities = 735/772 (95%), Gaps = 2/772 (0%)
Strand=Plus/Plus
Query 547 ATTTATGTTTATAACTTTATGGATCTTAGACTTCTTCATCAGATTGAAACTCAAGCTAAT 606
||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 400 ATTTATGTTTACAATTTTATGGACCTTAGACTTCTTCATCAGATTGAAACCCAAGCTAAT 459
Query 607 CCTAGAGGATTGTGTTGCCTTTCTCATCATTCTAATACGTCTGTGTTGGCTTGCCCTGGT 666
||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 460 CCTAGAGGATTATGTTGCCTTTCTCATCATTCTAATACGTCTGTGCTCGCTTGCCCCGGT 519
Query 667 C-TCAATCGAGGAGAGATTCGTGTTGAACATTTCGGGCTTAACATGGTACAAATCATAAA 725
| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 520 CTTC-ATCGAGGAGAGATTCGAGTTGAACATTTCGGGCTTAACATGGTACAAATCATAAA 578
Query 726 TGCTCATGATTCAAGTATTGCGTGTATGACCTTGACATTGGATGGTTTGTTGCTTGCAAC 785
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 579 TGCTCATGATTCTAGTATTGCGTGTATGACTTTGACATTGGATGGTTTGTTGCTCGCAAC 638
Query 786 TGCTAGTACAAAGGGAACTCTGATTAGAATCTTCAACACAATGGATGGAACTCGTTTGCA 845
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 639 TGCTAGTACAAAGGGAACTCTGATTAGAATCTTCAACACTATGGACGGAACTCGTTTGCA 698
Query 846 AGAGGTACGAAGAGGAGTCGACAGAGCAGATATATATAGCATTGCACTTTCACCAAATGT 905
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 699 AGAGGTACGAAGAGGAGTGGACAGAGCAGATATTTATAGCATTGCACTTTCACCAAACGT 758
Query 906 GCAGTGGCTGGCGGTATCAAGTGACAAGGGGACTGTTCACATTTTCTCTCTTAGAGTTAG 965
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 759 GCAGTGGCTGGCTGTATCAAGCGACAAGGGGACTGTTCACATTTTCTCTCTTAGAGTTAG 818
Query 966 GGTTGTTGGGGAGGATTCTTATTCCACTGAAAATGGAGCTCTGTTGACACAACAAAATTA 1025
| | ||||||||||||||||||||||||||||||| |||||| |||||||||||| |||
Sbjct 819 GCTAGTTGGGGAGGATTCTTATTCCACTGAAAATGCAGCTCTCCTGACACAACAAACTTA 878
Query 1026 TTCTAATTCTCTGCAAGGCCTTGTTTCTCCAACCATTGGTACCAATCCCGGTTCGTCATT 1085
||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 879 TTCTACTTCTCTGCAAGGCATTGTTTCTCCAACCACTGGTACCAATCCCGGTTCGTCATT 938
Query 1086 GTCGTTTATGAGAGGTGTTCTACCAAAGTATTTCAGCTCGGAATGGTCATATGCACAGTT 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 GTCGTTTATGAGAGGTGTTCTACCAAAGTATTTCAGCTCGGAATGGTCATATGCACAGTT 998
Query 1146 TCATGTATCAGAAGTCACACAATTCTTCGCAGCATTTGGCAGTAACAACACGGTTGCTAT 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 TCATGTATCAGAAGTCACACAATTCTTCGCAGCATTTGGCAGTAACAACACGGTTGCTAT 1058
Query 1206 TATCGGCATGGATGGAAGTTTCTACCGATGCAGCTTTGATCCCGTGAACGGAGGAGAGAT 1265
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1059 TATCGGCATGGATGGAAGTTTTTACAGATGCAGCTTTGATCCCGTGAACGGAGGAGAGAT 1118
Query 1266 GGGGCAACTGGAATATATCCACTTTATGAAGATGGACAACCGCCCGTGATAA 1317
|||||||||||||||| |||||||| |||||| ||||||||||| | |||||
Sbjct 1119 GGGGCAACTGGAATATTTCCACTTTCTGAAGACGGACAACCGCCGGAGATAA 1170
Score = 407 bits (220), Expect = 1e-112
Identities = 281/311 (90%), Gaps = 2/311 (1%)
Strand=Plus/Plus
Query 191 CAGAATCAGAATCTATGAAAAAAGAGGAAGCAGAGTTAGTTTCTGTGTGTTGGAATCAGG 250
|||||||||||||||| || || || ||||||||||| || |||||||| ||||||| |
Sbjct 89 CAGAATCAGAATCTATTAACAACGACGAAGCAGAGTTGGTCACTGTGTGTAGGAATCAAG 148
Query 251 ATTCAAGTTGTTTTGCAGCTGGAACGAGTCATGGTTTTCGTATATATAACTGTGAACCTT 310
|||| ||||| || |||||||||||||||||||| | |||||||||||||||| ||||||
Sbjct 149 ATTCCAGTTGCTTCGCAGCTGGAACGAGTCATGGCTATCGTATATATAACTGTCAACCTT 208
Query 311 TCAAAGAAACTTTCAGGCGTGAGCTAAAGGACGGTGGTTTTAAAATCGTAGAGATGCTTT 370
|||| |||||||||||||||||||||||| |||||||||| ||||| |||||||||||||
Sbjct 209 TCAAGGAAACTTTCAGGCGTGAGCTAAAGAACGGTGGTTTCAAAATTGTAGAGATGCTTT 268
Query 371 TCCGTAGCAATATACTGGCACTTGTTGGTGGTGGACCTAACTCTCAGTATCCTTCAAGCA 430
||| | ||||||| |||||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct 269 GCCGAATCAATATATTGGCACTTGTAGGTGGTGGACCTAACTCTCAGTACCCTTCAAACA 328
Query 431 AAGTACTAATTTGGGATGATCATCAGAGCCGTTGCATTAGTGAATTTGCATTTA-GGTCT 489
||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |||||
Sbjct 329 AAGTACTAATTTGGGATGATCATCAGACCCGTTGCATTAGTGAATT-GCAATTAAGGTCT 387
Query 490 GAGATTCGTGC 500
|||||||||||
Sbjct 388 GAGATTCGTGC 398
Score = 71.3 bits (38), Expect = 2e-11
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 133 ATGAGTTCAACTGTTTCAAATCCCCAAGGAATCCTGCAACCAGG 176
||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGAGCTCAACTGTTTCAAATCCCCAAGGAATCCTGCAACAAGG 44
> Ahg486086 jgi|Araly1|486086|fgenesh2_kg.5__2078__AT3G56440.1
Length=1600
Score = 1014 bits (549), Expect = 0.0
Identities = 915/1089 (84%), Gaps = 36/1089 (3%)
Strand=Plus/Plus
Query 217 GAAGCAGAGTTAGTTTCTGTGTGTTGGAATCAGGATTCA-AGTTGTTTTGCAGCTGGAAC 275
||||||||||| |||||||| | |||||||||||||| | || |||||||| ||||| ||
Sbjct 369 GAAGCAGAGTTGGTTTCTGTTTCTTGGAATCAGGATT-ACAGCTGTTTTGCTGCTGGTAC 427
Query 276 GAGTCATGGTTTTCGTATATATAACTGTGAACCTTTCAAAGAAACTTTCAGGCGTGAGCT 335
||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| || |||||
Sbjct 428 GAGCCATGGTTTTCGTATATACAACTGTGAACCGTTCAAGGAAACTTTCAGACGAGAGCT 487
Query 336 AAAGGACGGTGGTTTTAAAATCGTAGAGATGCTTTTCCGTAGCAATATAC-TGGCACTTG 394
|||| || || |||||||| ||||||||||||||||| || ||||| | |||| ||||
Sbjct 488 GAAGGGTGGAGGGTTTAAAATTGTAGAGATGCTTTTCCGGAGTAATAT-CTTGGCGCTTG 546
Query 395 TTGGTGGTGGACCTAACTCTCAGTATCCTTCAAGCAAAGTACTAATTTGGGATGATCATC 454
||||||||||||||||||||||||| ||||||| |||||| | ||||||||||||||||
Sbjct 547 TTGGTGGTGGACCTAACTCTCAGTACCCTTCAAATAAAGTATTGATTTGGGATGATCATC 606
Query 455 AGAGCCGTTGCATTAGTGAATTTGCATTTAGGTCTGAGATTCGTGCAGTGAAATTAAGAA 514
||||||| ||||| ||||| ||| | ||| |||| || |||||||||||||| |||||||
Sbjct 607 AGAGCCGCTGCATCAGTGAGTTTACTTTTCGGTCGGAAATTCGTGCAGTGAAGTTAAGAA 666
Query 515 GGGATCGGATTGTTGTTGTTCTTGAACATAAGATTTATGTTTATAACTTTATGGATCTTA 574
| ||||| ||||| ||||||||||| || ||||| ||||| || || ||||||||||| |
Sbjct 667 GAGATCGAATTGTCGTTGTTCTTGAGCACAAGATATATGTCTACAATTTTATGGATCTAA 726
Query 575 GACTTCTTCATCAGATTGAAACTCAAGCTAATCCTAGAGGATTGTGTTGCCTTTCTCATC 634
||||||||||||||||||||| || || ||||| || ||| | |||||||| |||||||
Sbjct 727 GACTTCTTCATCAGATTGAAAATCTGGCAAATCCAAGGGGACTATGTTGCCTCTCTCATC 786
Query 635 AT-TCTAATACGTCTGTGTTGGCTTGCCCTGGTCT-CAATCGAGGAGAGATTCGTGTTGA 692
|| | ||||| ||||| |||| || || ||| | | |||||||||| | || |||||
Sbjct 787 ATATG-AATACATCTGTCCTGGCCTGTCCAGGTATTCG-TCGAGGAGAGGTCCGAGTTGA 844
Query 693 ACATTTCGGGCTTAACATGGTACAAATCATAAATGCTCATGATTC-AAGTATTGCGTGTA 751
|||||| || ||||||||||| |||||||| |||||||||||||| || | | ||||| |
Sbjct 845 ACATTTTGGTCTTAACATGGTTCAAATCATCAATGCTCATGATTCTAA-TCTCGCGTGCA 903
Query 752 TGACCTTGACATTGGATGGTTTGTTGCTTGCAACTGCTAGTACAAAGGGAACTCTGATTA 811
||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||
Sbjct 904 TGACCTTGACATTGGATGGCTTGCTCCTTGCAACTGCCAGTACAAAGGGAACTCTGATTA 963
Query 812 GAATCTTCAACACAATGGATGGAACTCGTTTGCAAGAGGTACGAAGAGGAGTCGACAGAG 871
|||| |||||||| ||||| ||||||||| |||||||||| |||||||| || |||||||
Sbjct 964 GAATTTTCAACACGATGGACGGAACTCGTCTGCAAGAGGTCCGAAGAGGCGTGGACAGAG 1023
Query 872 CAGATATATATAGCATTGCACTTTCACCAAATGTGCAGTGGCTGGCGGTATCAAGTGACA 931
||||||| ||||||||||| || |||||||| ||||||||||| || |||||||| ||||
Sbjct 1024 CAGATATCTATAGCATTGCTCTATCACCAAACGTGCAGTGGCTTGCAGTATCAAGCGACA 1083
Query 932 AGGGGACTGTTCACATTTTCTCTCTTAGAGTTAGGGTTGTTGGGGAGGATTCTTATTCCA 991
||||||||||||||||||||||||| ||||| |||||| |||||||||| | || ||||
Sbjct 1084 AGGGGACTGTTCACATTTTCTCTCTCAGAGTGAGGGTTATTGGGGAGGACGCATACTCCA 1143
Query 992 CTGAAAATG-GAGCTCTGTTGACACAACAAAATTATTCTAATTCTCTGCAAGGC-CTTGT 1049
||||| ||| || || | || || || || | | ||||| | | |||||
Sbjct 1144 CTGAACATGAGA-CT-TCTT--CA-AA-----TT---C-----C-CTGCA-GCCTCTTGT 1183
Query 1050 TTCTCCAACCATTGGTACCAATCCCGGTTCGTCATTGTCGTTTATGAGAGGTGTTCTACC 1109
||||||| ||| |||| |||| ||||||||||||||||| ||| ||||||| ||||||||
Sbjct 1184 TTCTCCAGCCAGTGGTGCCAACCCCGGTTCGTCATTGTCTTTTCTGAGAGGAGTTCTACC 1243
Query 1110 AAAGTATTTCAGCTCGGAATGGTCATATGCACAGTTTCATGTATCAGAAGTCACACAATT 1169
||| |||||||||||||||||||||| | | ||||| |||||| |||||||||| ||||
Sbjct 1244 AAAATATTTCAGCTCGGAATGGTCATTTTCCCAGTTCCATGTACCAGAAGTCACCCAATA 1303
Query 1170 CTTCGCAGCATTTGGCAG-TAACAACACGGTTGCTATTATCGGCATGGATGGAAGTTTCT 1228
||| |||||||||||| | | | ||||| |||| ||||| ||| |||| ||||||||||
Sbjct 1304 CTTTGCAGCATTTGGC-GCTCAGAACACAATTGCGATTATTGGCTTGGACGGAAGTTTCT 1362
Query 1229 ACCGATGCAGCTTT-GATCCCGTGAACGGAGGAGAGATGGGGCAACTGGAATATATCCAC 1287
|| | |||| ||| ||||| |||||||||||||||||| || || ||| || ||||
Sbjct 1363 ACAGGTGCAA-TTTCGATCCAGTGAACGGAGGAGAGATGACTCAGCTTGAACATTTCCAT 1421
Query 1288 TTTATGAAG 1296
||| |||||
Sbjct 1422 TTTCTGAAG 1430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59039879750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5