BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40880.1
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483149 jgi|Araly1|483149|fgenesh2_kg.4__2209__AT2G40880.1 760 0.0
> Ahg483149 jgi|Araly1|483149|fgenesh2_kg.4__2209__AT2G40880.1
Length=588
Score = 760 bits (411), Expect = 0.0
Identities = 467/493 (95%), Gaps = 8/493 (2%)
Strand=Plus/Plus
Query 1 ACCGACATGGCCAAAACCTACGAATCTGAAATTTG-AAGAAGC---ATAAGTTTGTCTAT 56
||||||||||||||||||||||||||||||| ||| ||||||| |||||| | |||||
Sbjct 1 ACCGACATGGCCAAAACCTACGAATCTGAAA-TTGTAAGAAGCATAATAAGTCTCTCTAT 59
Query 57 TAAAGATGGAATCAAAGACGTTCTGGATCGTTACTCTTCTTCTCTGTGGAACAATTCAAT 116
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TAAAGATGGAATCAAAAAAGTTCTGGATCGTTACTCTTCTTCTCTGTGGAACAATTCAAT 119
Query 117 TAGCGATTTGCAGATCAGAAGAGAAAAGCACAGAGAAGACGATGATGCTAGGAGGCGTTC 176
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 TAGCGATTTGCAGATCAGAAGAGAAAAGCACAGAGAAGACGATGAAGCTAGGAGGCGTTC 179
Query 177 ATGATCTCCGAGGAAATCAGAACAGTGGAGAGATCGAGAGTCTCGCTCGATTTGCCATTC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATGATCTCCGAGGAAATCAGAACAGTGGAGAGATCGAGAGTCTCGCTCGATTTGCCATTC 239
Query 237 AAGAACATAACAAACAACAGAACAAAATTCTTGAGTTCAAGAAGATTGTCAAAGCAAGGG 296
|||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| |
Sbjct 240 AAGAGCATAACAAACAACAGAACAAGGTTCTTGAGTTCAAGAAGATTGTAAAAGCAAGAG 299
Query 297 AGCAGGTAGTTGCAGGAACGATGTACCACTTAACCCTAGAAGCAAAAGAAGGTGATCAGA 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 AGCAGGTAGTTGCAGGAACGATGTACCACTTAACCCTAGAAGCAAAAGAAGGTGATCATA 359
Query 357 CTAAGAATTTTGAAGCCAAAGTGTGGGTGAAGCCATGGATGAACTTCAAACAGTTGCAGG 416
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 CGAAGAACTTTGAAGCCAAAGTGTGGGTGAAGCCGTGGATGAACTTCAAACAGTTGCAGG 419
Query 417 AGTTCAAGGAATCATCTTCTTGAATTTCACTTGTTCAAGT-TAATGATTACAAATGCTCT 475
|||| |||||||| |||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 420 AGTTTAAGGAATCCTCTTCTTGAATTTCACTTGTTCAAATGTA-TGATTACAAATGCTCT 478
Query 476 GAGAGTAATTAAT 488
|||| |||| |||
Sbjct 479 GAGAATAAT-AAT 490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23102487702
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5