BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40940.1
Length=2364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934910 jgi|Araly1|934910|scaffold_402898.1 3140 0.0
Ahg475737 jgi|Araly1|475737|fgenesh2_kg.2__867__AT1G66340.1 316 4e-85
> Ahg934910 jgi|Araly1|934910|scaffold_402898.1
Length=1910
Score = 3140 bits (1700), Expect = 0.0
Identities = 1838/1907 (96%), Gaps = 0/1907 (0%)
Strand=Plus/Plus
Query 227 AAGTCAGAGCTCCAAAAATGGAGTCATGCGATTGTTTTGAGACGCATGTGAATCAAGATG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAGTCAGAGCTCCAAAAATGGAGTCATGCGATTGTTTTGAGACGCATGTGAATCAAGATG 63
Query 287 ATCTGTTAGTGAAGTACCAATACATCTCAGATGCGTTGATTGCTCTTGCATACTTCTCAA 346
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 64 ATCTGTTAGTGAAGTACCAATACATCTCCGATGCGTTGATTGCTCTTGCCTACTTCTCAA 123
Query 347 TCCCACTCGAGCTTATCTATTTCGTGCAAAAGTCTGCTTTCTTCCCTTACAAATGGGTGC 406
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 124 TCCCACTCGAGCTTATATATTTCGTGCAGAAGTCTGCTTTCTTCCCTTACAAATGGGTGC 183
Query 407 TTATGCAGTTTGGAGCCTTTATCATTCTCTGTGGAGCTACGCATTTCATCAACCTATGGA 466
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 184 TTATGCAGTTTGGAGCCTTTATCATTCTCTGTGGAGCTACACATTTCATCAACCTATGGA 243
Query 467 TGTTCTTCATGCATTCCAAAGCCGTTGCCATTGTCATGACTATTGCTAAAGTCTCTTGCG 526
|||| ||||||||||| ||||| ||||| ||||| ||||||||||| |||||||||||||
Sbjct 244 TGTTTTTCATGCATTCGAAAGCTGTTGCGATTGTGATGACTATTGCCAAAGTCTCTTGCG 303
Query 527 CGGTTGTGTCGTGTGCTACCGCGTTGATGTTGGTTCATATTATTCCTGATCTTCTCAGTG 586
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 304 CGGTTGTGTCGTGTGCAACTGCGTTGATGTTAGTTCATATTATTCCTGATCTTCTCAGTG 363
Query 587 TTAAGAACAGGGAATTGTTTCTCAAGAAGAAAGCTGATGAGTTAGATAGAGAAATGGGTC 646
| |||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 364 TCAAGAACCGGGAATTGTTTCTCAAGAAGAAAGCTGACGAGCTAGATAGAGAAATGGGTC 423
Query 647 TTATTTTAACACAAGAGGAGACTGGTAGGCATGTTAGGATGCTTACTCATGGAATTAGAA 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 424 TTATTTTAACACAAGAGGAGACTGGTAGGCATGTTAGGATGCTTACTCATGGAATCAGAA 483
Query 707 GAACTCTTGATAGGCATACTATTTTAAGAACCACTCTTGTTGAGCTTGGTAAAACTCTTT 766
|||| |||||||| ||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct 484 GAACGCTTGATAGACATACTATTCTAAGAACCACACTTGTTGAGCTCGGTAAAACTCTTT 543
Query 767 GTCTTGAGGAATGTGCGTTGTGGATGCCTTCTCAAAGTGGTTTATATTTGCAGCTTTCTC 826
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GCCTTGAGGAATGCGCCTTGTGGATGCCTTCTCAAAGTGGTTTATATTTGCAGCTTTCTC 603
Query 827 ATACTTTGAGTCATAAAATACAAGTTGGAAGCAGTGTGCCGATAAATCTCCCGATTATTA 886
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 ATACTTTGAGCCACAAAATACAAGTTGGAAGCAGTGTGCCGATAAATCTCCCGATTATTA 663
Query 887 ATGAACTCTTCAATAGCGCTCAAGCTATGCACATACCTCATTCTTGTCCTTTGGCTAAGA 946
| ||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||||
Sbjct 664 ACGAACTCTTCAATAGCGCTCAAGCAATGCACATACCTCATACATGTCCTCTGGCTAAGA 723
Query 947 TTGGGCCTCCGGTTGGGAGATATTCACCTCCTGAGGTTGTTTCTGTCCGTGTTCCTCTTT 1006
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 724 TTGGGCCTCCGGTTGGGAGATATTCGCCTCCCGAGGTTGTTTCTGTCCGTGTACCTCTTT 783
Query 1007 TACATCTCTCTAATTTCCAAGGCAGTGACTGGTCGGATCTCTCTGGCAAAGGTTACGCTA 1066
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 784 TACATCTCTCTAATTTCCAAGGCAATGACTGGTCGGATCTCTCTGGAAAAGGTTACGCTA 843
Query 1067 TCATGGTCCTGATTCTCCCAACCGATGGTGCAAGAAAATGGAGAGACCATGAGTTAGAGC 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TCATGGTCCTGATTCTCCCAACCGATGGTGCAAGAAAATGGAGAGACCATGAGTTAGAGC 903
Query 1127 TTGTAGAAAACGTGGCGGATCAGGTGGCTGTGGCTCTCTCACATGCTGCAATTTTGGAAG 1186
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 904 TTGTGGAAAACGTGGCGGATCAGGTGGCTGTGGCTCTCTCACACGCTGCAATTTTGGAGG 963
Query 1187 AATCCATGCACGCTCGTGACCAGCTTATGGAGCAGAATTTTGCTTTAGACAAGGCTCGTC 1246
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 AATCCATGCATGCTCGTGACCAGCTTATGGAGCAGAATTTTGCTTTAGACAAGGCTCGTC 1023
Query 1247 AAGAGGCTGAGATGGCAGTACATGCTCGAAATGATTTCCTAGCTGTTATGAACCACGAGA 1306
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1024 AAGAGGCAGAGATGGCAGTACATGCTCGAAATGATTTCCTAGCTGTCATGAACCACGAGA 1083
Query 1307 TGAGGACACCGATGCATGCCATCATCTCTCTTTCTTCTCTTCTCCTTGAGACTGAGCTGT 1366
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 1084 TGAGGACACCGATGCATGCCATCATCTCTCTGTCTTCTCTCCTCCTTGAGACGGAGCTGT 1143
Query 1367 CTCCAGAGCAAAGAGTTATGATCGAGACAATACTGAAAAGCAGCAATCTTGTGGCTACAC 1426
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 CTCCAGAACAGAGAGTTATGATCGAGACAATACTGAAAAGCAGCAATCTTGTGGCTACAC 1203
Query 1427 TAATCAGCGACGTTCTGGATCTTTCGAGATTGGAAGATGGGAGCTTACTCTTGGAAAATG 1486
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1204 TCATCAGCGACGTTCTGGATCTTTCAAGATTGGAAGATGGGAGCTTACTCTTGGAAAATG 1263
Query 1487 AACCATTCAGTCTACAAGCGATCTTTGAAGAGGTCATCTCTTTGATAAAGCCAATCGCAT 1546
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1264 AACCATTCAGTCTACAAGCGATCTTTGAAGAGGTCATCTCTCTCATAAAGCCAATCGCAT 1323
Query 1547 CAGTGAAGAAACTATCAACGAATCTGATTCTGTCTGCAGACTTACCAACTTATGCTATTG 1606
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1324 CGGTGAAGAAACTATCAACGAATCTGATTCTATCTGCAGACTTACCAACTTATGCTATTG 1383
Query 1607 GTGATGAGAAACGTCTGATGCAAACAATTCTTAACATCATGGGCAACGCTGTGAAATTTA 1666
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 1384 GTGATGAGAAACGTCTGATGCAAACTATTCTCAACATCATGGGCAACGCTGTGAAATTCA 1443
Query 1667 CTAAGGAAGGCTACATCTCCATAATAGCCTCTATCATGAAACCCGAGTCCTTACAAGAAT 1726
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 CCAAGGAAGGCTACATCTCCATAATAGCCTCTATCATGAAACCCGAGTCCTTACAAGAAT 1503
Query 1727 TACCATCTCCAGAATTTTTTCCAGTTCTCAGTGACAGTCACTTCTACCTATGTGTGCAGG 1786
|||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1504 TACCATCTCCAGAATTCTTTCCAGTTTTCAGTGACAGTCACTTCTACCTATGCGTGCAGG 1563
Query 1787 TGAAGGACACAGGGTGTGGAATTCACACACAAGACATTCCTTTGCTCTTTACCAAATTTG 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 TGAAGGACACAGGGTGTGGAATTCACACACAAGACATTCCTTTGCTCTTTACCAAATTTG 1623
Query 1847 TACAGCCTCGGACCGGAACTCAGAGGAACCATTCCGGTGGAGGACTCGGGCTAGCTCTCT 1906
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 TACAGCCACGGACTGGAACTCAGAGGAACCATTCCGGTGGAGGACTCGGGCTAGCTCTCT 1683
Query 1907 GTAAACGGTTTGTCGGGCTAATGGGAGGATACATGTGGATAGAAAGTGAAGGCCTAGAGA 1966
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1684 GTAAACGGTTTGTCGGGCTAATGGGAGGATACATGTGGATAGAAAGCGAAGGCCTAGAGA 1743
Query 1967 AAGGCTGCACAGCTTCGTTCATCATCAGGCTTGGTATCTGCAACGGTCCAAGCAGTAGCA 2026
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1744 AAGGCTGCACAGCTTCGTTTATCATCAGGCTCGGTATCTGCAACGGTCCAAGCAGTAGCA 1803
Query 2027 GTGGTTCAATGGCGCTACATCTTGCAGCTAAATCACAAACCAGACCGTGGAACTGGTGAT 2086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 GTGGTTCAATGGCGCTACATCTTGCAGCTAAATCACAAACCAGACCGTGGAACTGGTGAT 1863
Query 2087 ACATTACGTTGGAAAGACTTGTATTGAGGTGAGACTTTTTAACTACA 2133
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1864 ACATTACGTTGGAAAGACTTGTATTGAGGAGAGACTTTTTAACTACA 1910
> Ahg475737 jgi|Araly1|475737|fgenesh2_kg.2__867__AT1G66340.1
Length=2386
Score = 316 bits (171), Expect = 4e-85
Identities = 928/1281 (72%), Gaps = 101/1281 (8%)
Strand=Plus/Plus
Query 243 AATGG-AGTCATGCGATTGTTTTGAGA-CGC-ATGTG-AATCAAGATG-ATCTGTTAGTG 297
||||| |||| ||| ||||| |||| | ||| ||| | | | |||| || ||||| ||
Sbjct 165 AATGGAAGTC-TGCAATTGTATTGA-ACCGCAATG-GCCAGC-GGATGAAT-TGTTAATG 219
Query 298 AAGTACCAATACATCTCAGA-TGCGTTGATTGCTCTTGCATACTTCTCAATCCCACTCGA 356
||||| |||||||| || || | | || ||||| |||| || || || || || || ||
Sbjct 220 AAGTATCAATACATATCGGATTTC-TTCATTGCGATTGCGTATTTTTCTATTCCTCTTGA 278
Query 357 GCTT-ATCTA-TTTCGTGCAA-AAGTCTGCTTTCTTCCCTTACAAATGGGTGCTTATGCA 413
| || || || ||| ||| || || ||||| | || ||||| | |||||||||| | ||
Sbjct 279 G-TTGATATACTTT-GTG-AAGAAATCTGCGGTGTTTCCTTATAGATGGGTGCTTGTTCA 335
Query 414 GTTTGGAGCCTTTATCATTCTCTGTGGAGCTACGCAT-TTCATCAACCTATGGA-TGTTC 471
|||||| || ||||| |||| ||||| || || ||| || || ||| |||||| | |||
Sbjct 336 GTTTGGTGCTTTTATTGTTCTTTGTGGGGCGACTCATCTT-ATTAACTTATGGACT-TTC 393
Query 472 TTC-ATGCATTCCA-AAGCCGTTGC-CATTGTCATGACTATTGCTAAAGTCTCTTGC-GC 527
| | |||||| | || ||||||| | |||| ||||||| ||| ||||| | | | ||
Sbjct 394 -ACTACGCATTCGAGAA-CCGTTGCGC-TTGTTATGACTACTGCGAAAGTGT-TAACTGC 449
Query 528 GGTTGTGTCGTGTGCTACCGCGTTGATG-TTGGTTCATATTATTCCTGATCTT-CTCAGT 585
||||| ||||||||||| ||||||||| || |||||||||||||||||| || | |||
Sbjct 450 TGTTGTCTCGTGTGCTACTGCGTTGATGCTT-GTTCATATTATTCCTGAT-TTGTTGAGT 507
Query 586 GTTAAGAACAGGGAATTGTTTC-TCAAGAAGAAAGCTGATGAG-TTAGATAGAGAAATGG 643
||||||| | ||||| || ||| | || || || |||| ||| || ||||| |||||||
Sbjct 508 GTTAAGACCCGGGAACTG-TTCTTGAAAAATAAGGCTGCGGAGCTT-GATAGGGAAATGG 565
Query 644 GTCTT-ATTTTAACACAAGAGGAGACTGGTA-GGCATGTTAGGATGCTT-ACTCATGGA- 699
| || ||| ||| || || || || || | |||||||||| ||| || || ||| ||
Sbjct 566 G-ATTGATTCGAACTCAGGAAGAAACCGG-ACGGCATGTTAGAATG-TTGACACAT-GAG 621
Query 700 ATTAGAAGAACTCTT-GATAGGCATACTATTTT-AAGAACCACTCTTGTTGAGCTTGGTA 757
|||||||| ||| || ||||| ||||||||||| ||| || || ||||||||||||||||
Sbjct 622 ATTAGAAGCACT-TTAGATAGACATACTATTTTAAAG-ACTACACTTGTTGAGCTTGGTA 679
Query 758 AAACTCTTTGTC-TT-GAGGAATGTGCGTTGTGGATGCCTTCTCA-AAGTGGTTTATATT 814
|| || | | || || || ||||| |||||||||||| || | | ||| ||| |
Sbjct 680 GGAC-ATTAG-CTTTGGAAGAGTGTGCATTGTGGATGCCTACT-AGGACTGGGTTAGAGC 736
Query 815 TGCAGCTTTCTCATAC-TTTGAGTCA-TAAAATACAAGTTGGAAG--CA-GTGTGCCGA- 868
| ||||| ||| |||| || |||| || || | | ||| || | | || || |
Sbjct 737 TACAGCTCTCTTATACACTT-CGTCACCAACAT-CCCG-TGG-AGTATACG-GTTCCCAT 791
Query 869 TAAATCTCCCGATTATTAATGAACTCTTCAATAGC--GCTCA-AGCTATGCACATACCTC 925
| ||| | ||| | ||||| || | || || | | | | ||| | | ||| |||
Sbjct 792 TCAAT-TACCGGTGATTAACCAAGTATTTGGTA-CTAG-T-AGGGCTGTAAAAATATCTC 847
Query 926 ATTCTTGTCCTTTGGCTAAGATTG-GGCCTCCG-GT-TGGGAGATAT-TCACCTCCTGAG 981
| || ||| ||||| || ||| | ||| | | ||||| |||| | | | |||
Sbjct 848 CTAATTCCCCTGTGGCT-AGGTTGAGACCT--GTTTCTGGGAAATATAT-GCTTGGGGAG 903
Query 982 GTTGTTTCTGTCCGTGTTCCTCTTTTACATCTCTCTAATTTCCAAG-GCAGTGACTGGTC 1040
|| || |||| | ||||| ||| | || || |||||||| | || | ||||||| |
Sbjct 904 GTGGTCGCTGTGAGGGTTCCGCTTCTCCACCTTTCTAATTTTC-AGATTAATGACTGGCC 962
Query 1041 GGATCTCTCTGGCAAAG-GTTACGCTATCATGGTCCTGATTCTCCCAACCGATGGTGCAA 1099
|| || || | ||| | || ||| | |||||| |||| || || | ||| |||| |
Sbjct 963 TGAGCTTTC-AACGAAGAGATATGCTCTGATGGTCTTGATGCTTCCTTCAGATAGTGCGA 1021
Query 1100 GAAAATGGAGA-GACCATGAGTTAGAGCTTGTAGAAAACGTGGCGGATCAGGTGGCTGTG 1158
| ||||| | | ||||||||| || || || ||| ||| || |||||||||||||||
Sbjct 1022 GGCAATGG-CATGTCCATGAGTTGGAACTCGTTGAAGTCGTTGCTGATCAGGTGGCTGTG 1080
Query 1159 GCTCTCTCACATGCTGCAATTTTGGAAGAATCCATGC-ACGCTCGTGACCAGCTTATGGA 1217
||||||||||||||||| || | ||||| || |||| | ||| | |||| || |||||
Sbjct 1081 GCTCTCTCACATGCTGCGATCCTAGAAGAGTCTATGCGA-GCTAGGGACCTTCTCATGGA 1139
Query 1218 GCAGAATTTTGCTTTAGA-CAAGGCTCGTCAAGAGGCTGAGATGGCAGTACATGCTCGAA 1276
||||||| | ||| | || | || | | | ||| || |||| ||| | | ||| || |
Sbjct 1140 GCAGAATGTCGCTCTGGATCTAG-CAAGACGAGAAGCAGAGACAGCAATCCGTGCCCGCA 1198
Query 1277 ATGATTTCCTAGCTGTTATGAACCACGAGATGAGGACACCGATGCATGCCATCATCT-CT 1335
|||||||||| || ||||||||||| |||||| | || ||||||||||| ||||| | |
Sbjct 1199 ATGATTTCCTGGCAGTTATGAACCATGAGATGCGTACTCCGATGCATGCAATCAT-TGCA 1257
Query 1336 CTTTCTTCTCTT-CTCCTTGAGACTGAGCTGTCTCCAGAGCAAAGAGTT-ATGATCGAGA 1393
|| ||||| ||| |||| || || || || | || || ||||| | | ||| | || |
Sbjct 1258 CTCTCTTC-CTTACTCCAAGAAACGGAACTAACCCCTGAACAAAG-GCTGATGGTGGAAA 1315
Query 1394 CAATACTGAAAAGCAGCAATCTTGTGGCTACACTAATCAGCGACGTTCTG-GATCTTTCG 1452
||||||| ||||| ||||| ||| |||| || | || | || || || ||||||||
Sbjct 1316 CAATACTTAAAAGTAGCAACCTTTTGGCAACTTTGATGAATGATGT-CTTAGATCTTTCA 1374
Query 1453 AGATTGGAAGATGGGAG-CTT 1472
|| || || ||||| || |||
Sbjct 1375 AGGTTAGAGGATGGAAGTCTT 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89054992810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5