BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40950.1 Length=2467 Score E Sequences producing significant alignments: (Bits) Value Ahg934911 jgi|Araly1|934911|scaffold_402899.1 3419 0.0 Ahg324178 jgi|Araly1|324178|fgenesh1_pm.C_scaffold_5001722 440 2e-122 > Ahg934911 jgi|Araly1|934911|scaffold_402899.1 Length=2215 Score = 3419 bits (1851), Expect = 0.0 Identities = 2099/2212 (95%), Gaps = 43/2212 (2%) Strand=Plus/Plus Query 79 CCCTAAAACTCAGTTTCAAAATGGCTGAACCAATCACCAAGGAGCAGCCTCCTCCACCTG 138 ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 CCCTAAATCTCAGTTTCAAAATGGCTGAACCAATCACGGAGGAGCAGCCTCCTCCACCTG 60 Query 139 CTCCGGACCCTAATTCCACCTACCCTCCTCCGTCCGATTTTGATTCCATCTCGATCCCTC 198 |||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 61 CTCCTGACCCTAATTCTACCTTCCCTCCTCCGTCCGATTTTGATTCCATCTCGATCCCTC 120 Query 199 CGTTAGATGATCA----T----TT----CTCCGATCAGACTCCGATTGGTGAACTAATGT 246 |||| |||||||| | || ||||||||||||||||||||||||||| |||| Sbjct 121 CGTTCGATGATCATTTCTACCATTCCGGCTCCGATCAGACTCCGATTGGTGAACTCATGT 180 Query 247 CCGATCTGGGGTTTCCCGATGGTGAATTCGAGCTCACTTTCGACGGTATGGACGATCTTT 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CCGATCTGGGGTTTCCCGATGGTGAATTCGAGCTCACTTTCGACGGTATGGACGATCTTT 240 Query 307 AC-TTCCCTGCTGAGAATGAGTCGTTTCTCATCCCTATCAATACGTCCAATCAAGAACAG 365 || ||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||| Sbjct 241 ACTTTCCC-GCTGAGAATGAGTCGTTTCTCATCCCTGTGAATACGTCTAATCAAGAACAG 299 Query 366 TTTGGTGATTTCACTCCGGAGTCTGAAAGTTCTGGAATTTCCGGTGATTGTATTG---TT 422 ||||||||||| || |||||||||||| ||||||||||||||||||||||| ||| || Sbjct 300 TTTGGTGATTTTACGCCGGAGTCTGAAGGTTCTGGAATTTCCGGTGATTGTCTTGTTCTT 359 Query 423 CCCAAAGATGCAGATAAGACTATTACAACTTCCGGTTGCATTAACCGGGAATCTCCTAGA 482 ||||||||||| |||||| |||||||||||||||||||||||||| | | Sbjct 360 CCCAAAGATGCCGATAAGGGTATTACAACTTCCGGTTGCATTAACC--G---------G- 407 Query 483 GATTCCGATGATCGTTGCTCCGGTGCTGACCATAATTTAGATCTACCGACTCCATTGTCC 542 ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 408 GATTCCGATGATCGTTGCTCCGGTGCTGACCGTAGTTTAGATCTACCGACTCCATTGTCG 467 Query 543 TCTCAGGGTTCGGGTAATTGCGGTTCTGATGTTTCGGAAGCTACAAATGAATCGTCGCCT 602 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 TCTCAGGGTTCCGGTAATTGCGGTTCTGATGTTTCGGAAGCTACAAATGAATCGTCGCCT 527 Query 603 AAATCGAGAAACGTTG-CGGTCGACCAGAAGGTTAAAGTGGAAGAAGCTGCTACGACGAC 661 ||||| |||||||||| | |||||||||||||||||||||||||||||||| || ||||| Sbjct 528 AAATCAAGAAACGTTGTC-GTCGACCAGAAGGTTAAAGTGGAAGAAGCTGCCACTACGAC 586 Query 662 GACGT-CTATTACCAAGAGGAAGAAAGAGATCGATGAGGATTTGACTGACGAGTCTAGGA 720 | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 587 GTC-TATTATTACCAAGAGGAAGAAAGAGATCGATGAGGATTTGACTGACGAGTCTAGGA 645 Query 721 ACAGTAAGTACAGGAGATCGGGAGAGGATGCTGACGCTAGTGCTGTTACCGGTGAAGAAG 780 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 646 ACAGTAAGTACAGGAGATCAGGAGAGGATGCAGACGCTAGTGCTGTTACCGGTGAAGAAG 705 Query 781 ATGAGAAAAAGAGAGCTAGACTCATGAGAAACCGTGAAAGTGCTCAGCTTTCTAGGCAGA 840 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 ATGAGAAAAAGAAAGCTAGACTCATGAGAAACCGTGAAAGTGCTCAGCTTTCTAGGCAGA 765 Query 841 GGAAGAAGCATTACGTCGAGGAGCTTGAAGAAAAGGTTAGGAATATGCATTCTACGATTA 900 ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| Sbjct 766 GGAAGAAGCATTACGTCGAGGAGCTGGAAGAGAAGGTTAGGAATATGCATTCTACCATTA 825 Query 901 CGGATTTGAACGGTAAGATATCGTATTTCATGGCTGAGAATGCTACTCTAAGGCAGCAAT 960 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 826 CGGATTTGAACGGTAAGATATCGTATTTCATGGCCGAGAATGCTACTCTAAGGCAGCAAT 885 Query 961 TGGGTGGCAATGGAATGTGCCCGCCGCATCTTCCACCACCTCCGATGGGAATGTATCCAC 1020 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 886 TGGGCGGCAATGGAATGTGCCCGCCGCATCTTCCACCACCTCCGATGGGAATGTATCCAC 945 Query 1021 CTATGGCTCCAATGCCTTATCCATGGATGCCTTGTCCTCCTTATATGGTGAAGCAACAAG 1080 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 946 CTATGGCTCCAATGCCTTATCCATGGATGCCTTGTCCGCCTTATATGGTGAAGCAACAAG 1005 Query 1081 GATCTCAAGTGCCTTTGATTCCTATTCCTAGGTTGAAACCACAGAACACCCTTGGAACAT 1140 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 1006 GATCTCAAGTGCCTTTGATTCCCATTCCTAGGTTGAAGCCACAGAACACCCTTGGAACAT 1065 Query 1141 CCAAGGCTAAGAAGTCCGAGAGTAAGAAGAGTGAAGCTAAGACCAAGAAGGTGGCTAGTA 1200 |||||||||||||||| |||||||||||| ||||||||||||| |||||||| || |||| Sbjct 1066 CCAAGGCTAAGAAGTCGGAGAGTAAGAAGGGTGAAGCTAAGACTAAGAAGGTCGCCAGTA 1125 Query 1201 TTAGTTTTCTGGGTCTTCTGTTTTGTCTATTTTTGTTTGGTGCATTAGCTCCAATTGTGA 1260 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1126 TTAGTTTTCTGGGTCTTCTGTTTTGTCTATTTTTGTTTGGTGCATTGGCTCCAATTGTGA 1185 Query 1261 ACGTTAATTATGGAGGAATTAGTGGTGCTTTTTATGGGAACTATAGATCTAATTATATTA 1320 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1186 ACGTTAATTATGGAGGAATTAGTGGTGCCTTTTATGGGAACTATAGGTCTAATTATATTA 1245 Query 1321 CTGACCAGATTTACAGTCAGCATAGGGATAGAGTTTTGGATACATCTCGTAGTGGTGCTG 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1246 CTGACCAGATTTACAGTCAGCATAGGGATAGAGTTTTGGATACATCTCGTAGTGGTGCTG 1305 Query 1381 GTACTGGGGTTTCTAATAGTAATGGGATGCATCGTGGGAGAGATTCTGATCGAGGAGCTA 1440 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1306 GTACTGGGGTTTCTAATAGTAATGGGATGCATTGTGGGAGAGATTCTGATCGAGGAGCTA 1365 Query 1441 GGAAAAATATATCTGCAACAGAGAGTTCTGTCA-CTCCTGGAAATGGTAGTGAGCCTCTA 1499 ||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| Sbjct 1366 GGAAAAATATATCTGCAACAGAGAGCTCTGT-ACCTCCTGGAAATGGTAGTGAGCCTCTA 1424 Query 1500 GTTGCATCACTCTTTGTTCCGAGGAATGACAAGCTTGTGAAGATAGATGGGAATTTGATT 1559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1425 GTTGCATCACTCTTTGTTCCGAGGAATGACAAGCTTGTGAAGATAGATGGGAATTTGATT 1484 Query 1560 ATCAATTCTATATTGGCGAGTGAGAAAGCCGTGGCTTCGAGAAAGGCTTCTGAATCAAAG 1619 ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 1485 ATCAATTCTATATTGGCGAGTGAGAAAGCTGTGGCTTCGCGAAAGGCTTCTGAATCAAAG 1544 Query 1620 GAGAGGAAAGCTGACTTGATGATCTCTAAAGATTATACCCCTGCACTGCCTCTACCTGAC 1679 |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 1545 GAGAGGAAAGCTGACTTGGTGATCTCTAAAGATTATTCCCCTGCACTGCCTCTACCTGAT 1604 Query 1680 GTGGGAAGGACAGAGGA-ATTGGCTAAGCATCTCTATAGATCTAAGGCTGAAAAACAGAA 1738 ||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 1605 GTGGGAATGACCGAGGATAT-GGCTAAGCATCTCTATAGATCTAAGGCTGAAAAACAGAA 1663 Query 1739 AGCTCTATCCTCTGGCTCTGCTGATACTCTGAAAGACCAAGTCAAAACAAAAGCAGCCAA 1798 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1664 AGCTCTATCCTCTGGCTCTGCTGATACTCTGAAAGACCAATTCAAAACAAAAGCAGCCAA 1723 Query 1799 CGGTGAAATGCAGCAATGGTTCCGTGAAGGTGTTGCAGGTCCCATGTTTAGTTCAGGGAT 1858 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1724 CGGTGAAATGCAGCAATGGTTCCGTGAAGGTGTTGCAGGGCCCATGTTTAGTTCAGGGAT 1783 Query 1859 GTGCACTGAAGTGTTTCAGTTTGATGTATCCTCAACCTCTGGAGCCATCATTCCTGCAGC 1918 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1784 GTGCACTGAAGTGTTTCAGTTTGATGTATCCTCAACCTCTGGAGCCATCATTCCTGCATC 1843 Query 1919 TAC--CAAC----GTCTCTGCTGAACACGGTAAGAACACCACAGACACACACAAGCAACA 1972 | | |||| |||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 1844 TCCAGCAACCAATGTCTCTGCTGAACACGGTAAGAACACCACAGAGACACACAAGCAAAA 1903 Query 1973 GAACAGAAGAATCCTTCGTGGTCTTCCCATTCCACTCCCAGGATCAGATTTTAACCTCAC 2032 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1904 GAACAGAAGAATCCTTCGTGGTCTTCCCATTCCACTCCCGGGATCAGATTTTAACCTCAC 1963 Query 2033 GAAAGAGCACCAAAGAAACAGCAGTAGCAAAGAAATCAAGCCTGCTTCATCAATGGTTGT 2092 ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1964 CAAAGAGCACCAGAGAAACAGCAGTAGCAAAGAAATAAAGCCTGCTTCATCAATGGTTGT 2023 Query 2093 ATCTGTGCTTGTTGATCCCAGAGAAGGAGGTGATGGAGATATAGATGGGATGATTGGGGG 2152 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2024 ATCTGTGCTTGTTGATCCCAGAGAAGGCGGTGATGGAGATATAGATGGGATGATTGGGGG 2083 Query 2153 ACCAAAATCACTGTCTCGAGTTTTTGTAGTCGTGCTTCTGGACAGTGCAAAGTATGTAAC 2212 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 2084 ACCAAAATCACTGTCTCGAGTTTTTGTGGTCGTGCTTCTTGACAGTGCAAAGTATGTAAC 2143 Query 2213 ATACTCCTGTGTCCTACCTCGATCAGGAGCTCCTCATCTTGTGACCACTTGA 2264 |||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2144 ATACTCTTGTGTCCTACCTCGATCAGGAGCTCCTCATCTTGTGACAACTTGA 2195 > Ahg324178 jgi|Araly1|324178|fgenesh1_pm.C_scaffold_5001722 Length=1899 Score = 440 bits (238), Expect = 2e-122 Identities = 686/889 (77%), Gaps = 83/889 (9%) Strand=Plus/Plus Query 1410 CATCGTGGGAGAGATTCTGATCGAGGAGCTAG-GAA-AAATATATCTGCA-ACAGAG-AG 1465 ||| ||||| ||| |||||||| ||||| | | ||| ||| |||||| | |||||| | Sbjct 1060 CATTGTGGGGGAGGTTCTGATCAAGGAG-T-GAGAAGAAACGTATCTG-AGACAGAGAAC 1116 Query 1466 TTCTGTCACTCCTGGAAATGGTAGTGAGCCTCTAGTTGCATCACTCTTTGTTCCGAGGAA 1525 || | | ||||| ||||| ||||||| |||||||||||||| || ||||| |||||||| Sbjct 1117 TTGGGGC-CTCCTCGAAATAGTAGTGAACCTCTAGTTGCATCGCTATTTGTCCCGAGGAA 1175 Query 1526 TGACAAGCTTGTGAAGATAGATGGGAATTTGATTA-TCAATTCTATATTGGCGAGTGAGA 1584 ||| |||||||| ||||| ||||| |||||||||| || ||||| | |||||||| |||| Sbjct 1176 TGAAAAGCTTGTCAAGATCGATGGAAATTTGATTATTC-ATTCTGTTTTGGCGAGCGAGA 1234 Query 1585 AAGCC-GTGGCTTCGAGAAAGGCTTCTGAATCAAAGGAGAGG--AAAGCTGACTTGATGA 1641 ||||| | || ||| |||| | ||| |||| || ||| ||||| | | | | Sbjct 1235 AAGCCAG-GGATTC-TGAAA--C-AAAGAA-CAAA-GA-AGGCAAAAGCGGTGTAG-CAA 1285 Query 1642 -T-CT-CTAAA--GATTA-TACCCCTGCACTGCCTCTACCTGACGT-GGGAAGGA-CAGA 1693 | || ||||| ||||| | | |||||| ||||| |||||||| | ||||| || Sbjct 1286 CTACTACTAAAGGGATTATTTCTCCTGCAATGCCTTTACCTGAC-TCCACAAGGACCA-T 1343 Query 1694 GGAAT-TGGCTAAGCATCTCTATAGATC-TAAGGCTGAAAAACAGAAAGCTCTATCCTCT 1751 || || || ||||||| |||||||| | || || | ||| | | || ||| ||| Sbjct 1344 GG-ATATGTCTAAGCACCTCTATAG--CGAAACGCCG-AAAGC--CCTG-TC-ATCTTCT 1395 Query 1752 GGCTCTGCTGATACTCTGAAAGACCAAGTCAAAACAA-AAGCAGCCAACGGTGAAATGCA 1810 || |||| |||| || ||||||| ||| ||||| || || ||||||| ||| ||||||| Sbjct 1396 GGTTCTGATGATGCTTTGAAAGAACAACTCAAATTAACAA-CAGCCAATGGTCAAATGCA 1454 Query 1811 GCAATGGTTCCGTGAAGGTGTTGCAGGTCCCATGTTTAGTTCAGGGATGTGCACTGAAGT 1870 ||||||||| ||||||||||||||||| || ||||| ||||| ||||||||||| ||||| Sbjct 1455 GCAATGGTTTCGTGAAGGTGTTGCAGGGCCAATGTTCAGTTCGGGGATGTGCACCGAAGT 1514 Query 1871 GTTTCAGTTTGATGTATCCTCAACCTCTGGAGCCATCATTCCTGCAGCTACCAACGTCTC 1930 ||||||||||||||| ||||||||||| ||| ||||||||||||| | || || | | Sbjct 1515 GTTTCAGTTTGATGTCTCCTCAACCTCAGGATCCATCATTCCTGC--TTCCCCAC--C-C 1569 Query 1931 TGCTGAACACGGTAAGAACACCACAGACACACACAA---GCAACAGAACAGAAGAATCCT 1987 ||||||| |||| | | ||| || || ||||| | || |||||||||||||||| Sbjct 1570 -ACTGAACAATCTAAG-A-A-CACTGATACTCACAAGGGGAAAAAGAACAGAAGAATCCT 1625 Query 1988 TCGTGGTCTTCCCATTCCACTCCCAGGATCAGATTTTAACCTCACGAAAGAGC---A--- 2041 | |||| | | || | ||| ||| |||||||| || || ||||| | | Sbjct 1626 CCATGGTGGT--C-TT----T--CAGCATCTGATTTTAATCTTACCAAAGATCATAAGTG 1676 Query 2042 C-CAAAG-AAACAGCAGTAGCAAAGAAATCAAGCCTGCTTCATCAATGGTTGTATCTGTG 2099 | | || ||| || | | | | || | ||||||||| ||||||||||||||||||||| Sbjct 1677 CTC-TAGCAAAGAGAACT-TCCAGGACACCAAGCCTGCCTCATCAATGGTTGTATCTGTG 1734 Query 2100 CTTGTTGATCCCAGAGAAGGAGGTGATGGAGATATAGATGGGATGATTGGG-GGACCAAA 2158 |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||| |||| Sbjct 1735 CTTGTTGATCCCAGAGAAGGCGGTGATGGAGATATAGATGGGATGAT-GGGAGGAACAAA 1793 Query 2159 ATCACTGTCTCGAGTTTTTGTAGTCGTGCTTCTGGAC-A-GTGCAAAGTATGTAACATAC 2216 ||||||||||| |||||| ||||| ||||| ||||| | ||| || ||||||||||||| Sbjct 1794 ATCACTGTCTCCAGTTTTCATAGTCTTGCTTGTGGACGATGTG-AA-GTATGTAACATAC 1851 Query 2217 TCCTGTGTCCTACCTCGATCAGGAGCTCC-TCATCTTGTGACCACTTGA 2264 ||||| | || || || ||| || ||| |||||| |||| ||||||| Sbjct 1852 TCCTGCATTCTTCCACGGCCAGAAG-TCCCTCATCTCGTGAGCACTTGA 1899 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92978288045 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5