BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40960.1
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483163 jgi|Araly1|483163|fgenesh2_kg.4__2223__AT2G40960.1 1557 0.0
Ahg486108 jgi|Araly1|486108|fgenesh2_kg.5__2100__AT3G56680.1 448 6e-125
Ahg487300 jgi|Araly1|487300|fgenesh2_kg.6__434__AT5G05100.1 152 6e-36
> Ahg483163 jgi|Araly1|483163|fgenesh2_kg.4__2223__AT2G40960.1
Length=1206
Score = 1557 bits (843), Expect = 0.0
Identities = 1035/1127 (92%), Gaps = 16/1127 (1%)
Strand=Plus/Plus
Query 113 CTCATGGACACAGCATTGACCTCAGAATCAGGCTGTGCCGTTATAGCCGATAAGGGATTC 172
|||||||||||||| |||||||||||| |||| ||| ||||||| |||||||||||||||
Sbjct 81 CTCATGGACACAGCCTTGACCTCAGAAACAGGTTGTCCCGTTATGGCCGATAAGGGATTC 140
Query 173 AATGTGGATCCTTTTTTGGTCGAGGCTCTTCAAAACCCTCGACATCGTCTAACGATTTTG 232
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 141 ACGGTGGATCCTTTTTTGGTCGAGGCTCTTCAAAACCCTCGACATCGTCCAACGATTTTG 200
Query 233 CGGATGGAACTTGATGTTCAGAGGTTCTTGCAGAGCCCTGATCAGCAGCAATTCGAGTTC 292
||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 201 CGGATGGAACTTGATATTCAGAGGTTCTTCCAGAGCCCTGATCAGCAGCTATTCGAGTTC 260
Query 293 CAGCATTTCCCTACATCATACCTCCGTTTTGCGGCTCATCGTGTTGCTAATCACTATGGA 352
||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 261 CAGCATTTCCCTACATCATACCTCCGTCTTGCGGCCCATCGTGTTGCTAATCATTATGGA 320
Query 353 CTAATTACATCAGTTCGAGATGGTGGTGCAGATGGTAATGAGAGCAGAATTGTCGTGACT 412
|||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||
Sbjct 321 CTAATTACATCAGTTCGAGATGGTGGTGCAGATGGTAACGGGAGCAGAATTTTCGTGACT 380
Query 413 AAATCTAGTGATAGCAGATTTCCTGCTGCTCGACTATCTGAAATCCCTG-TGAAACAGTC 471
||||||| ||| ||||| ||||| |||| ||| |||||||||||||||| | ||||| ||
Sbjct 381 AAATCTACTGAGAGCAGTTTTCCCGCTGTTCGGCTATCTGAAATCCCTGCT-AAACAATC 439
Query 472 AGAAACTGGCAAGTTTGAGCATATGAAAGTTGTTATAAAGCCAAGACCTACTAAAGGATC 531
||| | ||||||||| ||||| |||||||||| |||||| || |||||| ||||||||||
Sbjct 440 AGAGATTGGCAAGTTCGAGCACATGAAAGTTGCTATAAATCCCAGACCTTCTAAAGGATC 499
Query 532 TGGAATGGAAGGTGATGAACT------GAAAGGTGGTCTTCTGAAAAGTGTTGAAGAGAG 585
||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 500 TGGTATGGAAGCTGATGAACTGGAAAAGAAAGGTGGTCTTCTGAAAAGTGTTGAAGAGAG 559
Query 586 GAAAGAAGATTACGACAGGGCTCGAGCACGCATATTTAACGGTCTTGTGAACATTGATTG 645
||||||||||||||||||||||||||| ||||||||||||||||||| | || |||||||
Sbjct 560 GAAAGAAGATTACGACAGGGCTCGAGCTCGCATATTTAACGGTCTTGCGGACCTTGATTG 619
Query 646 TAACGATTCTTCATCTGAAACTAATCCTTGGAGGGTGAATTGTAGTTCTAGCAGAGATGA 705
||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 620 TAATGATTCTTCATCTGAAACTAATCCTTGGAGGGTGAAATGTAGTCCTAGCAGAGATGA 679
Query 706 AAATCAAGTGTTGAAGAATGGTAATATCGAAGCAGACAAGAACAATATCTCTAGGAAGAG 765
||||||||||||| |||||||||||||||| |||||||||||| ||||| | ||| ||||
Sbjct 680 AAATCAAGTGTTGTAGAATGGTAATATCGAGGCAGACAAGAACCATATCACCAGGGAGAG 739
Query 766 CAATCCTGCATCTCGTATTGCAATTCTCAGAGACAGAGAGAAAGATCGATATGACCCTGA 825
|| |||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||
Sbjct 740 CATTCCTGCATCTCGTATTGCAATTATCAGAGACAGAGAGAAAGATCGGTATGATCCTGA 799
Query 826 CTATGACCGCAGCAATTACAGGTACATTAGTAACCTCCCAGTCGATCAAAATTTATGCGT 885
||||||||||||| || | ||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 800 CTATGACCGCAGCTATGATAGGTACATTAGTAACCTCCCAGTTGATCAAAATTTCTGCTT 859
Query 886 GGCACACTTCAACATTCAGACAATGGGGACACCAATCTATGATATGGGATTTAGAGGGTA 945
|||||||||||| | ||||| ||||||||||||||| |||||| |||||||||| |||||
Sbjct 860 GGCACACTTCAATAGTCAGAAAATGGGGACACCAATTTATGATCTGGGATTTAGCGGGTA 919
Query 946 TAG------TCCAACTGCTCCTCCATCTCTTAACTTGGGTCAACATTCTGTCATGAGCCC 999
||| ||||| || | || | |||||||||||||||||||||||||||||||||||
Sbjct 920 TAGCCAAAATCCAAGTGGTGCTGCTTCTCTTAACTTGGGTCAACATTCTGTCATGAGCCC 979
Query 1000 CTGCGTCACCACAGGTTTAAACCAGCCTTCAA-GAGATGCTGCTATGTACATGCAATGGC 1058
|| ||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 980 CTACGTCACCACGGGTTTAAACCAGCCTTCAATG-GATGCTGCTATGTACATGCAATGGC 1038
Query 1059 CAAATGCAGCAGCTGTGATGTATACTCATTCATATGACCACTTCAGAAACTCCCCTTTTC 1118
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1039 CAAATGCAGCAGCTGTGATGTATACTCATTCATATGACCACTTCAGAAACACCCCTTTTC 1098
Query 1119 AGGCGCAGTTCTATCCGCAGCCCCTTAGTTTCGATTACATGCAGAACCGGTAATTACTTT 1178
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1099 AGGCGCAGTTCTATCCGCAGCCCCTTAGCTTCGATTACATGCAGAACCGGTAATCCCTTT 1158
Query 1179 TCTCATCATGGCTAAGGATTTGTGTAATCCAGATTTTGAGACAGTTT 1225
||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1159 TCTCATCATGGCTAATGATTTGTGTAATCCAAATTTTGAGACAGTTT 1205
> Ahg486108 jgi|Araly1|486108|fgenesh2_kg.5__2100__AT3G56680.1
Length=1519
Score = 448 bits (242), Expect = 6e-125
Identities = 625/803 (78%), Gaps = 54/803 (7%)
Strand=Plus/Plus
Query 167 GGATTCAATGTGGATCCTTTTTTGGTCGAGGCTCTT-CAAAACCCTCGACATCGTCTAAC 225
||||| ||||| ||||||||| |||| |||||| || || ||| |||| |||||||| ||
Sbjct 299 GGATTGAATGTAGATCCTTTTCTGGTTGAGGCT-TTGCAGAACTCTCGCCATCGTCTCAC 357
Query 226 GATTTTGCGGATGGAACTTGATGTTCAGAGGTTCTTGCAGAGCCCTGATCAGCAGCAATT 285
||||||||||||||||||||||||||| ||||| ||||||| |||||| |||||||| ||
Sbjct 358 GATTTTGCGGATGGAACTTGATGTTCAAAGGTTGTTGCAGAACCCTGAACAGCAGCAGTT 417
Query 286 CGAGTTCCAGCATTTCCCTACATCATACCTCCGTTTTGCGGCTCATCGTGTTGCTAATCA 345
|||||||||||||| ||||| || || || ||| |||| || |||||||||||||| ||
Sbjct 418 TGAGTTCCAGCATTTTCCTACTTCGTATCTTCGTCTTGCAGCCCATCGTGTTGCTAACCA 477
Query 346 CTATGGACTAATTACATCAGTTCGAG-ATGGTGGTGCAGATGGTAATGAGAGCAGAATTG 404
||||||||| |||| | |||| || | ||||||||||||| ||||| | ||||||
Sbjct 478 TTATGGACTAGCTACAGCGGTTC-AGGAAAGTGGTGCAGATGGAAATGAAAACAGAATCC 536
Query 405 TCGTGACTAAATCTAGTGATAGCAGATTTCCTGCTGCT-CGACTATCTGAAATCCCTGTG 463
| ||||| ||| ||| || |||| ||| |||||| || || | ||||||||||| |||
Sbjct 537 TTGTGACAAAAACTACAGAGAGCAAATTCCCTGCT-CTTCGGTTGTCTGAAATCCCGGTG 595
Query 464 ---AAACAGTCAGAAACTGGCAAGTTTGAGCAT-ATGAAAGTTGTT-ATAAAGCCAAGAC 518
||||| ||||||| ||| ||||||||| | ||||||||| | || ||| | |||
Sbjct 596 GCTAAACAATCAGAAAATGGTAAGTTTGAG-AGCATGAAAGTT-TCCATCAAGACTCGAC 653
Query 519 CTACTAAAGGATCTGGA-ATGGAAGGTGATGAACTG-A-AAG----GTGGTCTTCTGAAA 571
|| |||||||||||||| |||| | || ||||||| | ||| |||||| ||| | |
Sbjct 654 CTTCTAAAGGATCTGGATATGGC-GCTGGTGAACTGGACAAGAAACGTGGTCCTCTTAGA 712
Query 572 AGTGTTGAAGAGAGGAAAGAAGATTACGACAGGGCTCGAGCACGCATATTTAACGGTCTT 631
||||||||||||||||||||||| || || |||||||||| ||||||||||| ||||||
Sbjct 713 AGTGTTGAAGAGAGGAAAGAAGAGTATGAAAGGGCTCGAGAACGCATATTTAGTGGTCTT 772
Query 632 GT-GAACATTGATTGTAACGATTCTTCATCTGAAACTAATCCTTGGA-GGGTG-AATTGT 688
| | || ||||| | || ||||||||||||||| | | | | ||| | ||| |
Sbjct 773 ACAGGTC-TTAATTGTGATGACTCTTCATCTGAAACTCAGG-T-GTATGGGAGGAAT-GC 828
Query 689 A-GT-T-CT-AGCAGAGATGAAAATCAAGTGT-TGAAGAATGGTAATATCGAAG-CAGAC 742
| || | || ||||||||||| || ||||| | | ||||||| | | | || | || |
Sbjct 829 AAGTCTTCTTAGCAGAGATGACAAGCAAGTTTCT-AAGAATGCTTACGTTGAGGGCA-AG 886
Query 743 AAGAACAATAT-C-TCTAGG-AAGAGCAATCCTGCATCTCGTATTGCAAT-TCTCAGAGA 798
|||||| || | || ||| || ||| ||| |||||||| ||||||| | | |||||
Sbjct 887 AAGAACT-TAAGCCTC-AGGGAA-AGCGGTCCAACATCTCGTGTTGCAATATTT-AGAGA 942
Query 799 CAGAGAGAAAGATCGATATGACCCTGACTATGACCGCAGCAATTACAGGTACATTAGTAA 858
||| ||||||||||| | ||||||||| ||||||||||| || | ||||| ||||| |
Sbjct 943 CAGGGAGAAAGATCGGTTTGACCCTGATTATGACCGCAGAAACGAAAGGTATATTAGGAG 1002
Query 859 CCTCCCAGTCGA-TCAAAATTT-A-TGCGTGGCACACTTCAACATTCAGACAA-TGGGGA 914
||| || || || ||| || || | | | ||| ||||||||||||| ||| | ||
Sbjct 1003 CCTTCCGGT-GAATCAGAACTTCAATT--TACCACCCTTCAACATTCAG-CAAATACCGA 1058
Query 915 CACCA-ATCTATGATATGGGATT 936
||||| | |||||| ||||||||
Sbjct 1059 CACCATA-CTATGAAATGGGATT 1080
> Ahg487300 jgi|Araly1|487300|fgenesh2_kg.6__434__AT5G05100.1
Length=1479
Score = 152 bits (82), Expect = 6e-36
Identities = 166/207 (80%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 176 GTGGATCCTTTTTTGGTCGAGGCTCTTCAAAACCCTCGACATCGTCTAACGATTTTGCGG 235
||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||
Sbjct 256 GTGGATCCTTTTTTGGTCGAGGCTCTTCAGAACCCTCGTCATCGTCTCACCATTTTGCGT 315
Query 236 ATGGAACTTGATGTTCAGAGGTTCTTGCAGAGCCCTGATCAGCAGCAAT-TCGAGTTCCA 294
||||| || ||| | |||| |||||| || || || || ||||| |||| | ||||||||
Sbjct 316 ATGGAGCTCGATATACAGAAGTTCTTTCAAAGTCCAGAGCAGCAACAATAT-GAGTTCCA 374
Query 295 GCATTTCCCTACATCATACCTCCGTTTTGCGGCTCATCGTGTTGCTAATCACTATGGACT 354
|| ||| |||||||| || || ||| || ||||| ||||||||| | || || || ||
Sbjct 375 GCCTTTGCCTACATCTTATCTTCGTCTTATTGCTCACCGTGTTGCTCAGCATTACGGGCT 434
Query 355 AATTACATCAG-TTCGAGATGGTGGTG 380
||||| | | || ||| |||||||
Sbjct 435 GTTTACAACGGCTTT-AGACGGTGGTG 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46967433744
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5