BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40970.1 Length=1146 Score E Sequences producing significant alignments: (Bits) Value Ahg934913 jgi|Araly1|934913|scaffold_402901.1 1118 0.0 > Ahg934913 jgi|Araly1|934913|scaffold_402901.1 Length=790 Score = 1118 bits (605), Expect = 0.0 Identities = 734/795 (92%), Gaps = 14/795 (2%) Strand=Plus/Plus Query 158 TCACTATCACCGCAGCTAGAATGAGAGAAGATAATCCAAATTGGTTCCTTAGATGGGAAG 217 |||| |||||||| |||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 1 TCACAATCACCGCCGCTAAAATGAGAGAAGATAATCCGAATTGGTTCCTTAGATGGGAAG 60 Query 218 AAGAGCTTCCATCTCCAGAAGAACTCATCCCTATCTCTCAAACCTTAATCACTCCTCATC 277 | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGGAGCTTCCATCGCCGGAAGAACTCATCCCTATCTCTCAAACCTTAATCACTCCTCATC 120 Query 278 TAGCTCTCGCTTTCCAAATCGGAAGTCCTAATCATCATCTCGGATCAAAGAGAACCACCG 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TAGCTCTCGCTTTCCAAATCGGAAGTCCTAATCATCATCTCGGATCAAAGAGAACCACCG 180 Query 338 CGATTTATCACCAGAAGCTTCAATCC-TCCACCACTCCAACAACTCCAACTCCAACTCCT 396 ||||||| ||||| ||| ||||| || ||| ||||||| || ||| |||||||||||| Sbjct 181 CGATTTACCACCAAAAGGTTCAA-CCATCCGCCACTCCGAC---TCCGACTCCAACTCCT 236 Query 397 CCACCGATGATGATGAATTCTGATTTCGGCGGTGGCGATTCCACGGATCTTGGTTCAGGA 456 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 237 CCACCGATGATGATGAATTCTGATTTCGGCGGTGGTGATTCCACGGATCTTGGTTCAGGA 296 Query 457 TCAATAGGAGGAGAGCCAGCAAGAACGTTGAAACGGCCGCGTCTAGTGTGGACGCCTCAG 516 || || ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 297 TCGATCGGAGGAGAGCCAGCAAGAACGTTGAAACGACCGCGTTTAGTGTGGACGCCTCAG 356 Query 517 CTACACAAACGTTTCGTGGATGCGGTTGGACACTTAGGGATCAAAAACGCAGTTCCAAAG 576 |||||||||||||| ||||| || || ||||| ||||||||||||||||||||||||||| Sbjct 357 CTACACAAACGTTTTGTGGACGCAGTCGGACATTTAGGGATCAAAAACGCAGTTCCAAAG 416 Query 577 ACTATAATGCAGCTTATGAGCGTTGAAGGATTGACTAGAGAGAACGTTGCGAGTCATCTT 636 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 ACGATAATGCAGCTAATGAGCGTTGAAGGATTGACTAGAGAGAACGTTGCGAGTCATCTT 476 Query 637 CAGAAATATCGTCTTTACCTTAGGAGAATGCAAGGCGGGAACGGTAACGGAATCACTGGA 696 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 477 CAGAAATACCGTCTTTACCTTAGGAGAATGCAAGGCGGGAACGGTAACGGAATCTCCGGT 536 Query 697 GGACACGTCATCGTCTCTGATTCGGCTACTGATCGGCTATTTGCTAGCTCACCGGTTCCA 756 ||||||||||||||||| ||||| ||||| ||||||||||| |||| ||| |||||||| Sbjct 537 GGACACGTCATCGTCTCCGATTCCGCTACCGATCGGCTATTCGCTAACTCGCCGGTTCCC 596 Query 757 GCTC-ATTTCTTGAGCCCGGATTACTTGATGCCGCCATTAGAGCATTCGTATATGGGGAA 815 | | ||||||||||||| || |||||||||||||||||| ||||||||||| ||||||| Sbjct 597 G-TGGATTTCTTGAGCCCTGAGTACTTGATGCCGCCATTACAGCATTCGTATTTGGGGAA 655 Query 816 ACATGTGATTACGCAGCAAAACCAAGTGGTTCGTAATCTGAGGTATGAAGATTCGGAATA 875 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 ACATGTGATTACGCAGCAAAACCAAGTGGTTCGTAATCTGAGGTATGAAGATTCGGAATA 715 Query 876 TGGTCATGGT-A-G-TA-T-G-AAGATGCTTAAGCTCTTCCCTGCCGGAAATTAATGAAA 929 ||||||||| | | | | | ||||| ||||||||||||||||||||||||| ||||| Sbjct 716 TGGTCATGGAGATGGTGCTAGCAAGATTCTTAAGCTCTTCCCTGCCGGAAATTGATGAAT 775 Query 930 TATTT-GAATTCTTA 943 ||||| ||||| ||| Sbjct 776 TATTTTGAATTGTTA 790 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42735789957 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5