BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G41010.1 Length=939 Score E Sequences producing significant alignments: (Bits) Value Ahg483168 jgi|Araly1|483168|fgenesh2_kg.4__2228__AT2G41010.1 1109 0.0 > Ahg483168 jgi|Araly1|483168|fgenesh2_kg.4__2228__AT2G41010.1 Length=864 Score = 1109 bits (600), Expect = 0.0 Identities = 789/877 (90%), Gaps = 25/877 (3%) Strand=Plus/Plus Query 74 ATGGTGACTTCGGAGGGATTAGCAAGCGTTGATTCTTGGTTATATCGCCAAGGTTTCAAC 133 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 ATGGTGACTTCCGAGGGATTAGCAAGCGTTGATTCATGGTTATATCGCCAAGGTTTCAAC 60 Query 134 GTTGATTCATGGTTGCTTTCTGATACCTTCTCTCACGACAACGATTTGCTCGCAAGAGCT 193 ||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||| Sbjct 61 GTTGATTCATGGTTGCTCTCTGATGCCTTCTCTCACGACAACGATCTGCTCGCCAGAGCT 120 Query 194 CTCCATACCACCGT--CA-CAGCCCCTCATACTCTCACTCCTTCCTCTGCTTTCTTCGAT 250 || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTACATACCACCGTCACAGCAGCCCCTCATACTCTCACTCCTTCCTCTGCTTTCTTCGAT 180 Query 251 TCCTCCGCTGTTTCTCACCCTT-CTTC-C-ACTAACACACTCTCCTCTACCGTCTCCGGT 307 || |||| ||||||||||||| || | | ||||||||||||||||||| ||||||| || Sbjct 181 TCAGCCGCAGTTTCTCACCCTTCCTCCACTACTAACACACTCTCCTCTAACGTCTCCTGT 240 Query 308 GCTTCTGATCCAGAAATCATCGGCGGAGGAGCTAAACGGAAACGTAACTGCCTTCTTACC 367 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGATCTGATCCAGAAATCATCGGCGGAGGAGCTAAACGGAAACGTAACTGCCTTCTTACT 300 Query 368 GACGGTAAAGCCGCCAAGCGCCGCGCTCGTGCTTCCAAGAAATCTCAGACTACTTTCATA 427 || ||||||||| |||||||||| |||||||||||||||||||||||||| ||||| ||| Sbjct 301 GAAGGTAAAGCCACCAAGCGCCGTGCTCGTGCTTCCAAGAAATCTCAGACGACTTTTATA 360 Query 428 ACGGCGGATCCGTCCAACTTTCGTCAGATGGTTCAGCAAGTGACTGGCGCCAAGTACATC 487 ||||||||||||||||| ||||| |||||||||||||||||||| ||| | | ||||||| Sbjct 361 ACGGCGGATCCGTCCAATTTTCGCCAGATGGTTCAGCAAGTGACCGGCTCTAGGTACATC 420 Query 488 GATGACTCTTCTTCCTTTGGTATTTTCGATCCGATTGTCAAGCCGGAGCCGCTTAGGTTC 547 ||||| | | ||||||| || || |||||||||||||||||||| |||||||||||| || Sbjct 421 GATGA-T-T-CTTCCTTCGGGATGTTCGATCCGATTGTCAAGCCAGAGCCGCTTAGGCTC 477 Query 548 GTTAACAAACTGCCTTGTGGTCCT-TCGGATCGATCCACGGCGGTTCCAATGCTCGACAC 606 |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| || Sbjct 478 GTTAACCAACTGCCTTGTGGTC-TGTCGGATCGATCCACGGCGGTTCCAATGCTCGATAC 536 Query 607 ATCAGCATTTTTGTCTAATCATCACCAGGAGAATCTCGCAGTGGGAAATGCTTTCTCCGG 666 ||| ||||||||||||||||||||||||||||||||||||||||| || || | ||||| Sbjct 537 ATCGGCATTTTTGTCTAATCATCACCAGGAGAATCTCGCAGTGGGGAACGCCTACTCCGC 596 Query 667 TAAC-AGCAGCAGTGTAGGATTACCGTCGGGGAAGCCAAGTGCAACGGCCGACCCCGGTG 725 | | | | | ||| ||||||| | ||||||||||||| |||||| || ||| | |||| Sbjct 597 TG-CTA-CGGGAGT--AGGATTAACTTCGGGGAAGCCAAATGCAACAGCGGACGCAGGTG 652 Query 726 GTTCTGCCGTGGAGTTTGATAATTACCCAACATTTCCAACGCTTGAATCGTGGAAGGTTA 785 |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| || | Sbjct 653 TTTCTGCCGAGGATTTTGAAAATTACCCAACATTTCCAACGCTTGAATCGTGGAAAGTAA 712 Query 786 TGTGATCTGTTTCTTTCAGTCTTAGACGTAATCTTTAACTTTTTAGGTTTGTTTTCTTTG 845 |||||||| | | ||| ||| |||||||||||||||||||||||||| |||||||||||| Sbjct 713 TGTGATCT-TGT-TTT-AGTTTTAGACGTAATCTTTAACTTTTTAGGCTTGTTTTCTTTG 769 Query 846 CATC-CCTTCATGAATAATCTTGTTCATAGTTTTTGTTTATCGATGTAATGGATCAAATC 904 |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 770 CATCTCCT-CATGAATAATCTTGTTCATAGTTTTTCTTTATCGATGTAATGGATCAAATC 828 Query 905 TGA-GTTCT-TTT-GACTTTAAAACTATTTAGAGGAT 938 | | | ||| ||| |||||||||| ||||||| |||| Sbjct 829 T-ATGCTCTATTTTGACTTTAAAATTATTTAGCGGAT 864 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34844346138 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5